A. Perczel

发表

Quantum Chemical Calculations on Small Protein Models

I. Jákli, A. Perczel, B. Viskolcz, 2014 .

AMINO ACID CONFORMATIONAL ANALYSES OF PROTEINS (ACAP PROGRAM)

A. Perczel, I. Csizmadia, P. Hudáky, 1996 .

Peptide models XII Topological features of molecular mechanics and ab-initio 8D-Ramachandran maps. Conformational data for Ac-(l-Ala)4-NHMe and For-(l-Ala)4-NH2

A. Perczel, I. Csizmadia, J. Ladik, 1995 .

Peptide Models 10. Topological features of molecular mechanics and ab initio 6D-Ramachandran maps. Conformational data for Ac-l-Ala-l-Ala-l-Ala-NHMe andFor-l-Ala-l-Ala-l-Ala-NH2

A. Perczel, I. Csizmadia, M. McGovern, 1994 .

Peptide models 4. Topological features of molecular mechanics and ab initio 2D-ramachandran maps: Conformational data for for-Gly-NH2, for-l-Ala-NH2, Ac-l-Ala-NHMe and for-l-Val-NH2

J. Rivail, W. Viviani, A. Perczel, 1993 .

Peptide models 5. Topological features of molecular mechanics and ab initio 4D-Ramachandran maps

A. Perczel, I. Csizmadia, M. McAllister, 1993 .

A study on the backbone/side-chain interaction in N-formyl-(L)serineamide

J. Ángyán, A. Perczel, I. Csizmadia, 1990 .

iNEXT: a European facility network to stimulate translational structural biology

J. Ellenberg, H. Schwalbe, D. Stuart, 2018, FEBS letters.

Dead-end street of protein folding: thermodynamic rationale of amyloid fibril formation.

Villö K. Pálfi, A. Perczel, P. Hudáky, 2007, Journal of the American Chemical Society.

Probing dynamic protein ensembles with atomic proximity measures.

Annamária F. Ángyán, S. Pongor, Z. Gáspári, 2010, Current protein & peptide science.

CoNSEnsX: an ensemble view of protein structures and NMR-derived experimental data

Annamária F. Ángyán, Z. Gáspári, Balázs Szappanos, 2010, BMC Structural Biology.

Reconciling the lock‐and‐key and dynamic views of canonical serine protease inhibitor action

András Perczel, Balázs Szappanos, Zoltán Gáspári, 2010, FEBS letters.

Penetratin analogues acting as antifungal agents.

B. Penke, R. Enriz, A. Perczel, 2011, European journal of medicinal chemistry.

Penetratin and Derivatives Acting as Antibacterial Agents

B. Penke, R. Enriz, A. Perczel, 2013, Chemical biology & drug design.

Membrane translocation of penetratin and its derivatives in different cell lines

B. Penke, A. Perczel, T. Letoha, 2003, Journal of molecular recognition : JMR.

The Structure of the Complex of Calmodulin with KAR-2

Judit Ovádi, Gábor Náray-Szabó, András Perczel, 2005, Journal of Biological Chemistry.

A redesigned genetic code for selective labeling in protein NMR.

Z. Gáspári, A. Perczel, G. Pál, 2008, BioEssays : news and reviews in molecular, cellular and developmental biology.

Rational design of α-helix-stabilized exendin-4 analogues.

Petra Rovó, A. Perczel, M. Szabó, 2014, Biochemistry.

Challenging drug target for Parkinson's disease: Pathological complex of the chameleon TPPP/p25 and alpha-synuclein proteins.

J. Ovádi, V. Uversky, J. Olah, 2017, Biochimica et biophysica acta. Molecular basis of disease.

The Eighth Central European Conference “Chemistry towards Biology”: Snapshot

J. Koča, S. Geidl, V. Horský, 2016, Molecules.

A matrix isolation study on Ac-Gly-NHMe and Ac-l-Ala-NHMe, the simplest chiral and achiral building blocks of peptides and proteins.

A. Perczel, György Tarczay, E. Vass, 2007, Physical chemistry chemical physics : PCCP.

DYNLL2 dynein light chain binds to an extended linear motif of myosin 5a tail that has structural plasticity.

W. Y. Wahlgren, G. Katona, A. Perczel, 2014, Biochemistry.

Mutation-dependent recessive inheritance of NPHS2-associated steroid-resistant nephrotic syndrome

K. Tory, G. Mollet, O. Gribouval, 2014, Nature Genetics.

Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements

A. Perczel, D. Menyhárd, M. Bokor, 2019, Scientific Reports.

Impairment of a model peptide by oxidative stress: Thermodynamic stabilities of asparagine diamide Cα-radical foldamers

I. Jákli, A. Perczel, B. Viskolcz, 2014 .

Role of water in protein folding, oligomerization, amyloidosis and miniprotein

A. Perczel, T. Vajda, 2014, Journal of peptide science : an official publication of the European Peptide Society.

Extended apolar beta-peptide foldamers: the role of axis chirality on beta-peptide sheet stability.

A. Perczel, I. Csizmadia, G. Pohl, 2010, The journal of physical chemistry. B.

Assignment of Vibrational Circular Dichroism Cross‐Referenced Electronic Circular Dichroism Spectra of Flexible Foldamer Building Blocks: Towards Assigning Pure Chiroptical Properties of Foldamers

A. Perczel, A. Nagy, D. Menyhárd, 2019, Chemistry.

Cooperation between a salt bridge and the hydrophobic core triggers fold stabilization in a Trp-cage miniprotein.

A. Perczel, P. Hudáky, G. Váradi, 2008, Biochemistry.

Catalytic mechanism of α-phosphate attack in dUTPase is revealed by X-ray crystallographic snapshots of distinct intermediates, 31P-NMR spectroscopy and reaction path modelling

M. Wilmanns, E. Rosta, B. Vértessy, 2013, Nucleic acids research.

Dynamically encoded reactivity of Ras enzymes: opening new frontiers for drug discovery

A. Perczel, D. Menyhárd, G. Pálfy, 2020, Cancer and Metastasis Reviews.

1H, 15N backbone assignment and comparative analysis of the wild type and G12C, G12D, G12V mutants of K-Ras bound to GDP at physiological pH

A. Perczel, István Vida, G. Pálfy, 2019, Biomolecular NMR Assignments.

Determining the Molecular Basis for the pH-dependent Interaction between the Link Module of Human TSG-6 and Hyaluronan*♦

I. Campbell, A. Perczel, Jonathan D. Taylor, 2007, Journal of Biological Chemistry.

Ab initio conformational space study of model compounds of O-glycosides of serine diamide.

A. Perczel, I. Csizmadia, G. Csonka, 2002, Chemistry.

Cryo-EM structure of acylpeptide hydrolase reveals substrate selection by multimerization and a multi-state serine-protease triad

I. Jákli, A. Perczel, N. Hosogi, 2022, Chemical science.

Assessment of Tractable Cysteines for Covalent Targeting by Screening Covalent Fragments

G. Keserű, B. Vértessy, A. Perczel, 2020, ChemBioChem.

Dynamics of small, folded proteins

Petra Rovó, A. Perczel, D. Menyhárd, 2014 .

Stable intrachain and interchain complexes of neurofilament peptides: a putative link between Al3+ and Alzheimer disease.

G. Fasman, A. Perczel, Z. M. Shen, 1994, Proceedings of the National Academy of Sciences of the United States of America.

α/β-Chimera peptide synthesis with cyclic β-sugar amino acids: the efficient coupling protocol

A. Perczel, A. Nagy, V. Farkas, 2019, Amino Acids.

Biochemical and pharmacological characterization of three opioid-nociceptin hybrid peptide ligands reveals substantially differing modes of their actions

A. Magyar, A. Perczel, G. Garab, 2018, Peptides.

Omicron Binding Mode: Contact Analysis and Dynamics of the Omicron Receptor-Binding Domain in Complex with ACE2

A. Perczel, D. Menyhárd, Z. Fazekas, 2022, J. Chem. Inf. Model..

alpha- and 3(10)-helix interconversion: a quantum-chemical study on polyalanine systems in the gas phase and in aqueous solvent.

A. Rashin, A. Perczel, I. Csizmadia, 2001, Journal of the American Chemical Society.

Breaking and making of the S-S linkage via nucleophilic substitution. An ab initio study

J. Rivail, W. Viviani, A. Perczel, 1998 .

Estimating intrinsic structural preferences of de novo emerging random‐sequence proteins: Is aggregation the main bottleneck?

Annamária F. Ángyán, Z. Gáspári, A. Perczel, 2012, FEBS letters.

Transformation of aldose formazans. Novel synthesis of 2-acetamido-2-deoxypentonolactones and a new pent-2-enose formazan.

A. Perczel, I. Pintér, V. Zsoldos-Mády, 2011, Carbohydrate research.

Determining suitable lego-structures to estimate stability of larger peptide nanostructures using computational methods

A. Perczel, I. Csizmadia, A. Czajlik, 2006, Physical biology.

The inherent flexibility of peptides and protein fragments quantitized by CD in conjunction with CCA+

I. Jákli, A. Perczel, 2009, Journal of peptide science : an official publication of the European Peptide Society.

Differentiation between transmembrane helices and peripheral helices by the deconvolution of circular dichroism spectra of membrane proteins

G. Fasman, A. Perczel, Kyusung Park, 1992, Protein science : a publication of the Protein Society.

Antibody recognition and conformational flexibility of a plaque-specific beta-amyloid epitope modulated by non-native peptide flanking regions.

M. Przybylski, A. Perczel, F. Hudecz, 2008, Journal of medicinal chemistry.

The Route from the Folded to the Amyloid State: Exploring the Potential Energy Surface of a Drug‐Like Miniprotein

Toshimichi Fujiwara, András Perczel, Yuji Goto, 2019, Chemistry.

Opening Amyloid-Windows to the Secondary Structure of Proteins: The Amyloidogenecity Increases Tenfold Inside Beta-Sheets

V. Grolmusz, A. Perczel, Bálint Varga, 2022, 2210.11842.

Bacterial fermentation and isotope labelling optimized for amyloidogenic proteins

A. Perczel, É. Kiss, G. Gyulai, 2021, Microbial biotechnology.

Aromatic Cluster Sensor of Protein Folding: Near-UV Electronic Circular Dichroism Bands Assigned to Fold Compactness.

I. Jákli, A. Perczel, G. Tóth, 2016, Chemistry.

Bacterial expression and/or solid phase peptide synthesis of 20-40 amino acid long polypeptides and miniproteins, the case study of Class B GPCR ligands.

A. Perczel, M. Szabó, G. Tóth, 2016, Current protein & peptide science.

Turn conformations in peptides containing the -Xaa-Ser- sequence.

G. Fasman, H. Mantsch, A. Perczel, 2009, International journal of peptide and protein research.

Turns in small cyclic peptides — can infrared spectroscopy detect and discriminate amongst them?

G. Fasman, H. Mantsch, R. Shaw, 1994 .

Peptide models XXXV. Protonated and deprotonated N-formyl-L-histidinamide: an ab initio study on side-chain potential energy surfaces of all major backbone conformers

A. Perczel, P. Hudáky, Ilona Hudáky, 2002 .

Atropisomerism of the Asn α radicals revealed by Ramachandran surface topology.

I. Jákli, A. Perczel, B. Viskolcz, 2013, The journal of physical chemistry. B.

Synthesis of the extracellular domain of GLP-1R by chemical and biotechnological approaches

A. Perczel, Z. Kele, G. Tóth, 2022, RSC advances.

Prediction of folding preference of 10 kDa silk-like proteins using a Lego approach and ab initio calculations.

A. Perczel, J. Borbély, G. Pohl, 2006, Journal of the American Chemical Society.

Peptide models XXXIV. Side-chain conformational potential energy surfaces associated with all major backbone folds of neutral tautomers of N- and C-protected l-histidine. An ab initio study on ethylimidazole and N-formyl-l-histidinamide

A. Perczel, P. Hudáky, Tamás Beke, 2002 .

C-terminal oligomerization of podocin mediates interallelic interactions

K. Tory, G. Mollet, Eszter Balogh, 2019 .

C-terminal oligomerization of podocin mediates interallelic interactions.

K. Tory, G. Mollet, C. Antignac, 2018, Biochimica et biophysica acta. Molecular basis of disease.

Assignment of vibrational circular dichroism cross-referenced electronic circular dichroism spectra of flexible foldamer building blocks: towards assigning foldamers’ pure chiroptical properties

A. Perczel, A. Nagy, D. Menyhárd, 2019 .

Origin of problems related to Staudinger reduction in carbopeptoid syntheses

A. Perczel, A. Nagy, V. Harmat, 2016, Amino Acids.

Deciphering factors which determine the Ramachandran surface of peptides. The application of isodesmic surfaces, Δ E ID ( ϕ , ψ ), to analyze the contribution of rotating moieties to the shape of potential energy surfaces

A. Perczel, I. Csizmadia, P. Hudáky, 2000 .

Full backbone assignment and dynamics of the intrinsically disordered dehydrin ERD14

P. Tompa, A. Perczel, Dénes Kovács, 2011, Biomolecular NMR assignments.

Prospects in computational molecular medicine: a millennial mega-project on peptide folding

A. Perczel, I. Csizmadia, A. K. Füzéry, 2000 .

New antifungal peptides. Synthesis, bioassays and initial structure prediction by CD spectroscopy.

B. Penke, R. Enriz, A. Perczel, 2010, Bioorganic & medicinal chemistry letters.

Combined NMR three‐bond scalar coupling measurements and QM calculations to calculate OH‐rotamer equilibrium of polyalcohols

Tamás Beke, András Perczel, Katalin E. Kövér, 2009, J. Comput. Chem..

Synthesis of chimera oligopeptide including furanoid β-sugar amino acid derivatives with free OHs: mild but successful removal of the 1,2-O-isopropylidene from the building block

A. Perczel, I. Pintér, Viktória Goldschmidt Gőz, 2021, Amino Acids.

Assessment of tractable cysteines by covalent fragments screening.

S. Grdadolnik, G. Keserű, B. Vértessy, 2020, Chembiochem : a European journal of chemical biology.

Vicinal disulfide turns.

Oliviero Carugo, Sándor Pongor, Masa Cemazar, 2003, Protein engineering.

A matrix isolation study on Ac–l-Pro–NH2: a frequent structural element of β- and γ-turns of peptides and proteins

A. Perczel, György Tarczay, E. Vass, 2008 .

An exploratory study on the oxo-enol tautomerization of selected dioxopiperazines and their sulphur-containing analogues

A. Perczel, M. Hollósi, M. Kajtár, 1993 .

Off-pathway 3D-structure provides protection against spontaneous Asn/Asp isomerization: shielding proteins Achilles heel

I. Jákli, A. Perczel, G. Mező, 2020, Quarterly Reviews of Biophysics.

Development of cyclic NGR peptides with thioether linkage: structure and dynamics determining deamidation and bioactivity.

L. Kőhidai, A. Perczel, E. Lajkó, 2015, Journal of medicinal chemistry.

Synthesis, solution structure analysis and antibody binding of cyclic epitope peptides from glycoprotein D of Herpes simplex virus type I.

R. Kiss, A. Perczel, S. Bősze, 2003, Biophysical chemistry.

Approaches to Pyranuronic β‐Sugar Amino Acid Building Blocks of Peptidosaccharide Foldamers

A. Perczel, V. Harmat, I. Pintér, 2018 .

On the flexibility of β‐peptides

Imre G. Csizmadia, Tamás Beke, András Perczel, 2004, J. Comput. Chem..

Foldamer Stability Coupled to Aggregation Propensity of Elongated Trp‐Cage Miniproteins

A. Perczel, G. Tóth, V. Farkas, 2013 .

Exploiting diverse stereochemistry of β-amino acids: toward a rational design of sheet-forming β-peptide systems

A. Perczel, I. Csizmadia, T. Beke-Somfai, 2012, Amino Acids.

Secondary structure of short β-peptides as the chiral expression of monomeric building units: a rational and predictive model.

A. Perczel, V. Branchadell, R. Ortuño, 2012, The Journal of organic chemistry.

Theoretical Study on Tertiary Structural Elements of β-peptides: Nanotubes Formed from Parallel-Sheet-Derived Assemblies of β-Peptides

A. Perczel, I. Csizmadia, Tamás Beke, 2006 .

Toward a rational design of β‐peptide structures

Tamás Beke, András Perczel, Csaba Somlai, 2006, J. Comput. Chem..

Structural Water Stabilizes Protein Motifs in Liquid Protein Phase: The Folding Mechanism of Short β-Sheets Coupled to Phase Transition

B. Nordén, A. Perczel, T. Beke-Somfai, 2021, International journal of molecular sciences.

The role of entropy in initializing the aggregation of peptides: a first principle study on oligopeptide oligomerization.

I. Jákli, A. Perczel, I. Csizmadia, 2012, Physical chemistry chemical physics : PCCP.

A theoretical comparison of self-assembling alpha- and beta-peptide nanostructures: toward design of beta-barrel frameworks.

A. Perczel, B. Bálint, A. Czajlik, 2008, ACS nano.

Chiral and achiral fundamental conformational building units of beta-peptides: a matrix isolation conformational study on Ac-beta-HGly-NHMe and Ac-beta-HAla-NHMe.

A. Perczel, György Tarczay, C. Somlai, 2009, The journal of physical chemistry. B.

C-3 epimers of sugar amino acids as foldameric building blocks: improved synthesis, useful derivatives, coupling strategies

A. Perczel, A. Nagy, V. Farkas, 2017, Amino Acids.

Predictable Conformational Diversity in Foldamers of Sugar Amino Acids

Ilona Hudáky, András Perczel, Dóra K. Menyhárd, 2017, J. Chem. Inf. Model..

Structure, enzymatic stability and antitumor activity of sea lamprey GnRH-III and its dimer derivatives

O. Csuka, M. Przybylski, A. Perczel, 2007, Peptides.

Foldamers of β-peptides: conformational preference of peptides formed by rigid building blocks. The first MI-IR spectra of a triamide nanosystem

A. Perczel, V. Branchadell, R. Ortuño, 2013, Amino Acids.

Four faces of the interaction between ions and aromatic rings

Petra Rovó, András Perczel, Imre Jákli, 2017, J. Comput. Chem..

Stability issues of covalently and noncovalently bonded peptide subunits

Imre G. Csizmadia, András Perczel, Péter Hudáky, 2004, J. Comput. Chem..

Peptide models XLII. Ab initio study on conformational changes of N-formyl-l-histidinamide caused by protonation or deprotonation of its side chain

A. Perczel, P. Hudáky, 2004 .

Peptide models. XXXIII. Extrapolation of low‐level Hartree–Fock data of peptide conformation to large basis set SCF, MP2, DFT, and CCSD(T) results. The Ramachandran surface of alanine dipeptide computed at various levels of theory

ANDRÁS PERCZEL, ÖDÖN FARKAS, IMRE JÁKLI, 2003, Journal of Computational Chemistry.

Peptide models XXXI. Conformational properties of hydrophobic residues shaping the core of proteins. An ab initio study of N‐formyl‐L‐valinamide and N‐formyl‐L‐phenylalaninamide

András Perczel, Imre Jákli, Péter Hudáky, 2001, J. Comput. Chem..

Toward direct determination of conformations of protein building units from multidimensional NMR experiments I. A theoretical case study of For‐Gly‐NH2 and For‐L‐Ala‐NH2

András Perczel, Attila G. Császár, A. Perczel, 2000 .

Conformational analysis and structural study by ab initio gradient geometry optimizations of the model tripeptide N-formyl L-alanyl L-alanine amide

F. Momany, A. Perczel, I. Csizmadia, 1993 .

Engineering new peptidic inhibitors from a natural chymotrypsin inhibitor

A. Perczel, Z. Mucsi, G. Orosz, 2002, Journal of peptide science : an official publication of the European Peptide Society.

Compactness of Protein Folds Alters Disulfide‐Bond Reducibility by Three Orders of Magnitude: A Comprehensive Kinetic Case Study on the Reduction of Differently Sized Tryptophan Cage Model Proteins

A. Perczel, E. Keszei, G. Tóth, 2019, Chembiochem : a European journal of chemical biology.

Configuration controlled crystal and/or gel formation of protected D-Glucosamines supported by promiscuous interaction surfaces and a conformationally heterogeneous solution state.

A. Perczel, D. Menyhárd, V. Harmat, 2020, Chemistry.

Protein Dynamics as Reported by NMR

Z. Gáspári, A. Perczel, Zoltán Gáspári, 2010 .

Peptide models XXIII. Conformational model for polar side‐chain containing amino acid residues: A comprehensive analysis of RHF, DFT, and MP2 properties of HCO‐L‐SER‐NH2

I. Jákli, A. Perczel, I. Csizmadia, 2000 .

Peptide models 6. New .beta.-turn conformations from ab initio calculations confirmed by x-ray data of proteins

A. Perczel, I. Csizmadia, M. McAllister, 1993 .

Theoretical study on tertiary structural elements of beta-peptides: nanotubes formed from parallel-sheet-derived assemblies of beta-peptides.

A. Perczel, I. Csizmadia, Tamás Beke, 2006, Journal of the American Chemical Society.

Toward a rational design of beta-peptide structures.

A. Perczel, C. Somlai, Tamás Beke, 2006, Journal of computational chemistry.

On the flexibility of beta-peptides.

A. Perczel, I. Csizmadia, Tamás Beke, 2004, Journal of computational chemistry.

How weak an acid can be? Variations of H-bond and/or van der Waals Interaction of Weak Acids

A. Perczel, I. Csizmadia, Szebasztián Szaniszló, 2017, Structural Chemistry.

CD and Fourier transform ir spectroscopic studies of peptides. II. Detection of β‐turns in linear peptides

G. Fasman, A. Magyar, A. Perczel, 1994, Biopolymers.

Characterization of β‐turns in cyclic hexapeptides in solution by fourier transform IR spectroscopy

G. Fasman, H. Mantsch, A. Perczel, 1993, Biopolymers.

Conformation dependence of pKa: Ab initio and DFT investigation of histidine

A. Perczel, P. Hudáky, 2004 .

Prolylproline unit in model peptides and in fragments from databases

A. Perczel, Ilona Hudáky, 2007, Proteins.

Analysis of hydrogen bonds in peptides, based on the hydration affinity of amides

Henry H. Mantsch, András Perczel, Istvan Lengyel, 1993 .

Multiple fuzzy interactions in the moonlighting function of thymosin-β4

P. Tompa, L. Buday, Si-Hyung Lee, 2013, Intrinsically disordered proteins.

Local binding with globally distributed changes in a small protease inhibitor upon enzyme binding

W. M. Westler, L. Gráf, Z. Gáspári, 2006, The FEBS journal.

D27-LIKE1 carotenoid isomerase has a preference towards trans/cis and cis/cis conversions in Arabidopsis

A. Perczel, L. Kovács, Z. Gulyás, 2022, bioRxiv.

Extended intermolecular interactions in a serine protease-canonical inhibitor complex account for strong and highly specific inhibition.

G. Katona, L. Gráf, A. Perczel, 2005, Journal of molecular biology.

Unwanted hydrolysis or α/β-peptide bond formation: how long should the rate-limiting coupling step take?

A. Perczel, A. Nagy, E. Keszei, 2019, RSC advances.

From Qualitative to Quantitative Analyses of Circular Dichroism Spectra Using the Convex Constraint Algorithm

A. Perczel, 1993 .

Analysis of the circular dichroism spectrum of proteins using the convex constraint algorithm: a practical guide.

G. Fasman, A. Perczel, K. Park, 1992, Analytical biochemistry.

A simple fold with variations: the pacifastin inhibitor family

András Perczel, Zoltán Gáspári, Csaba P. Ortutay, 2004, Bioinform..

Comparative structure analysis of proteinase inhibitors from the desert locust, Schistocerca gregaria.

L. Gráf, Z. Gáspári, A. Perczel, 2002, European journal of biochemistry.

Cooperativity of carbohydrate moiety orientation and β‐ turn stability is determined by intramolecular hydrogen bonds in protected glycopeptide models

G. Fasman, A. Perczel, M. Hollósi, 1990, Biopolymers.

Synthesis and conformational analysis of N‐glycopeptides. II. CD, molecular dynamics, and nmr spectroscopic studies on linear N‐glycopeptides

G. Fasman, A. Perczel, M. Hollósi, 1993, Biopolymers.

2-Acetamido-2-deoxyaldonolactones from sugar formazans

A. Perczel, I. Pintér, A. Neszmélyi, 1994 .

Folded‐unfolded cross‐predictions and protein evolution: The case study of coiled‐coils

András Perczel, Balázs Szappanos, László Nyitray, 2010, FEBS letters.

Can NO2+ exist in bent or cyclic forms?

P. Piecuch, J. Papp, B. Penke, 2001 .

Structural impact of GTP binding on downstream KRAS signaling†

G. Keserű, A. Perczel, Z. Orgován, 2020, Chemical science.

The Mechanism of the Reverse Recovery Step, Phosphate Release, and Actin Activation of Dictyostelium Myosin II*

Clive R. Bagshaw, Stefan Fischer, A. Málnási-Csizmadia, 2008, Journal of Biological Chemistry.

A conformational comparison of N- and C-protected methionine and N- and C-protected homocysteine

A. Perczel, I. Csizmadia, A. Láng, 2003 .

Natively unfolded tubulin polymerization promoting protein TPPP/p25 is a common marker of alpha-synucleinopathies

H. Budka, J. Kovács, J. Ovádi, 2004, Neurobiology of Disease.

Interplay of Structural Disorder and Short Binding Elements in the Cellular Chaperone Function of Plant Dehydrin ERD14

D. Vertommen, P. Tompa, L. Buday, 2020, Cells.

The Piwi‐piRNA pathway: road to immortality

T. Vellai, A. Perczel, Z. Ivics, 2017, Aging cell.

Protein Aggregation in a Nutshell: The Splendid Molecular Architecture of the Dreaded Amyloid Fibrils.

András Perczel, A. Perczel, D. Menyhárd, 2019, Current protein & peptide science.

The Budapest Amyloid Predictor and Its Applications

Vince Grolmusz, Balint Varga, Laszlo Keresztes, 2020, Biomolecules.

Pseudouridylation defect due to DKC1 and NOP10 mutations causes nephrotic syndrome with cataracts, hearing impairment, and enterocolitis

H. Williams, D. Curtis, K. Tory, 2020, Proceedings of the National Academy of Sciences.

Convex constraint analysis: a natural deconvolution of circular dichroism curves of proteins.

G. Fasman, G. Tusnády, A. Perczel, 1991, Protein engineering.

Intermodule cooperativity in the structure and dynamics of consecutive complement control modules in human C1r

P. Gál, P. Závodszky, A. Perczel, 2010, The FEBS journal.

Directed Evolution-Driven Increase of Structural Plasticity Is a Prerequisite for Binding the Complement Lectin Pathway Blocking MASP-Inhibitor Peptides

Annamária F. Ángyán, Z. Gáspári, P. Gál, 2022, ACS chemical biology.

Disordered TPPP/p25 binds GTP and displays Mg2+‐dependent GTPase activity

J. Ovádi, J. Olah, E. Hlavanda, 2011, FEBS letters.

Peptide models. 1. Topology of selected peptide conformational potential energy surfaces (glycine and alanine derivatives)

Imre G. Csizmadia, János G. Ángyán, András Perczel, 1991 .

The importin-beta P446L dominant-negative mutant protein loses RanGTP binding ability and blocks the formation of intact nuclear envelope.

I. Boros, F. Nagy, P. Clarke, 2002, Journal of cell science.

NMR studies of a viral protein that mimics the regulators of complement activation.

I. Campbell, G. Shaw, P. Barlow, 1997, Journal of molecular biology.

Covalent fragment mapping of KRasG12C revealed novel chemotypes with in vivo potency.

G. Szakács, G. Keserű, B. Vértessy, 2023, European journal of medicinal chemistry.

How reverse turns may mediate the formation of helical segments in proteins: an x-ray model.

G. Fasman, A. Perczel, B. Foxman, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Study of Al3+ binding and conformational properties of the alanine-substituted C-terminal domain of the NF-M protein and its relevance to Alzheimer's disease.

G. Fasman, A. Perczel, Z. M. Shen, 1994, Biochemistry.

Intrinsic structural disorder of DF31, a Drosophila protein of chromatin decondensation and remodeling activities.

P. Tompa, K. Medzihradszky, A. Perczel, 2008, Journal of proteome research.

Structural insights into the Trp-cage folding intermediate formation.

Kristóf Huszár, István Bartha, András Perczel, 2013, Chemistry.

The evaluation of type I and type II beta-turn mixtures. Circular dichroism, NMR and molecular dynamics studies.

G. Fasman, A. Perczel, M. Hollósi, 2009, International journal of peptide and protein research.

Phosphorylation loops in synthetic peptides of the human neurofilament protein middle-sized subunit

G. Fasman, L. Otvos, A. Perczel, 1988, Journal of protein chemistry.

Ca2+‐induced conformational transitions of phosphorylated peptides

G. Fasman, L. Otvos, A. Perczel, 1993, Biopolymers.

Metal ion-induced conformational changes of phosphorylated fragments of human neurofilament (NF-M) protein.

G. Fasman, L. Otvos, A. Perczel, 1992, Journal of molecular biology.

Phosphorylation as conformational switch from the native to amyloid state: Trp-cage as a protein aggregation model.

J. Kovács, Petra Rovó, A. Perczel, 2015, The journal of physical chemistry. B.

Peptide and protein folding

Imre G. Csizmadia, András Perczel, Ricardo D. Enriz, 2001 .

A search for the ideal type I β-turn

G. Fasman, I. Jákli, A. Perczel, 1996 .

FT-IR spectroscopy guided analysis of the circular dichroism spectra of polypeptides

G. Fasman, A. Perczel, Z. Majer, 1993 .

Information accumulation in helical oligopeptide structures

A. Perczel, B. Viskolcz, I. Csizmadia, 2007 .

Helix compactness and stability: Electron structure calculations of conformer dependent thermodynamic functions

I. Jákli, A. Perczel, B. Viskolcz, 2013 .

Aromatic cluster sensor of protein folding: near-UV ECD bandsassigned to fold compactness

I. Jákli, A. Perczel, V. Farkas, 2016 .

Peptide models XLV: Conformational properties of N‐formyl‐L‐methioninamide and its relevance to methionine in proteins

A. Perczel, I. Csizmadia, A. Láng, 2004, Proteins.

Potential energy curves, surfaces and hypersurfaces. A model to follow and understand the conformational transformations in amino acids

A. Perczel, A. K. Füzéry, P. Hudáky, 2004 .

Toward a computed peptide structure database: The role of a universal atomic numbering system of amino acids in peptides and internal hierarchy of database

J. Rivail, S. Lovas, A. Perczel, 2002 .

Peptide models XXI. Side-chain/backbone conformational interconversions in HCO-l-Ser-NH2. Tracing relaxation paths by ab initio modeling. An exploratory study

I. Jákli, A. Perczel, I. Csizmadia, 1998 .

PEPTIDE MODELS XXII. A CONFORMATIONAL MODEL FOR AROMATIC AMINO ACID RESIDUES IN PROTEINS. A COMPREHENSIVE ANALYSIS OF ALL THE RHF/6-31+G CONFORMERS OF FOR-L-PHE-NH2

I. Jákli, A. Perczel, I. Csizmadia, 1998 .

Peptide models XV. The effect of basis set size increase and electron correlation on selected minima of the ab initio 2D-Ramachandran map of For-Gly-NH2 and For-l-Ala-NH2

Imre G. Csizmadia, András Perczel, Michael A. McAllister, 1997 .

Peptide models. XIV. Ab initio study on the role of side-chain backbone interaction stabilizing the building unit of right- and left-handed helices in peptides and proteins

A. Perczel, I. Csizmadia, J. Marcoccia, 1997 .

Peptide models XVI. The identification of selected HCO—L—SER—NH2 conformers via a systematic grid search using ab initio potential energy surfaces

A. Perczel, I. Csizmadia, Ö. Farkas, 1996 .

Searching for the simplest structural units to describe the three-dimensional structure of proteins

A. Perczel, I. Csizmadia, 1995 .

A complete set of conformational elements defining secondary structures of proteins

A. Perczel, I. Csizmadia, 1993 .

Peptide Conformational Potential Energy Surfaces and their Relevance to Protein Folding

W. Viviani, A. Perczel, I. Csizmadia, 1992 .

Same fold with different mobility: backbone dynamics of small protease inhibitors from the desert locust, Schistocerca gregaria.

A. Nagy, L. Gráf, Z. Gáspári, 2004, Biochemistry.

Structure-oriented rational design of chymotrypsin inhibitor models.

Z. Gáspári, A. Perczel, Z. Mucsi, 2003, Protein engineering.

Structure and stability of β‐pleated sheets *

Imre G. Csizmadia, András Perczel, Zoltán Gáspári, 2005, J. Comput. Chem..

A self‐stabilized model of the chymotrypsin catalytic pocket. The energy profile of the overall catalytic cycle

A. Perczel, P. Hudáky, 2005, Proteins.

Alternatively spliced exon B of myosin Va is essential for binding the tail-associated light chain shared by dynein.

K. Schlett, A. Perczel, A. Németh, 2006, Biochemistry.

Protein structure and dynamics

A. Perczel, G. Náray‐Szabó, 2014 .

pKa optimized catalysis in serine proteinases, an ab initio study on the catalaytic His

A. Perczel, P. Hudáky, 2007 .

Coupling strategies in solid-phase synthesis of glycopeptides.

G. Fasman, L. Otvos, H. Ertl, 1989, Peptide research.

Peptide models XI. Substitution effects on peptide chains. The magnitude of side-chain–backbone interactions in oligopeptides HCO-(NHCHRCO)n-NH2 for R=CH3. An ab initio study

J. Rivail, W. Viviani, A. Perczel, 1995 .

Conformational analysis of pseudocyclic hexapeptides based on quantitative circular dichroism (CD), NOE, and x-ray data. The pure CD spectra of type I and type II .beta.-turns

G. Fasman, A. Perczel, M. Hollósi, 1991 .

Hydrogen‐Bonding Network Anchors the Cyclic Form of Sugar Arylhydrazones

I. Jákli, A. Perczel, A. Csámpai, 2016 .

The Route from the Folded to the Amyloid State: Exploring the Potential Energy Surface of a Drug-Like Miniprotein.

T. Fujiwara, A. Perczel, D. Menyhárd, 2020, Chemistry.

Cost-Effective Flow Peptide Synthesis: Metamorphosis of HPLC

A. Perczel, K. Horváti, V. Farkas, 2021 .

Deconvolution of the circular dichroism spectra of proteins: The circular dichroism spectra of the antiparallel β‐sheet in proteins

G. Fasman, A. Perczel, Kyusung Park, 1992, Proteins.

Stability of the hydration layer of tropocollagen: A QM study

András Perczel, Villö K. Pálfi, A. Perczel, 2009, J. Comput. Chem..

A nomenclature of peptide conformers

R. Kiss, A. Perczel, Ilona Hudáky, 2004 .

Vicinal disulfide bridge conformers by experimental methods and by ab initio and DFT molecular computations

S. Pongor, O. Carugo, Z. Gáspári, 2004, Proteins.

Solubilization of beta-amyloid-(1-42)-peptide: reversing the beta-sheet conformation induced by aluminum with silicates.

G. Fasman, A. Perczel, C. D. Moore, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Toward direct determination of conformations of protein building units from multidimensional NMR experiments. V. NMR chemical shielding analysis of N‐formyl‐serinamide, a model for polar side‐chain containing peptides

András Perczel, Attila G. Császár, Anna K. Füzéry, 2003, J. Comput. Chem..

Cooperativity network of Trp‐cage miniproteins: probing salt‐bridges

Petra Rovó, A. Perczel, G. Tóth, 2011, Journal of peptide science : an official publication of the European Peptide Society.

Solvation model induced structural changes in peptides. A quantum chemical study on Ramachandran surfaces and conformers of alanine diamide using the polarizable continuum model

Ilona Hudáky, András Perczel, Péter Hudáky, 2004, J. Comput. Chem..

Generation and analysis of the conformational potential energy surfaces of N-acetyl-N-methyl-l-alanine-N′-methylamide. An exploratory ab initio study

R. Kiss, P. Mátyus, Z. Gáspári, 2003 .

Peptide models XIX: Side-chain conformational energy surface and amide I vibrational frequencies of N-formyl-l-phenylalaninamide (For-Phe-NH2) in its γL or γinv or C7eq backbone conformation

A. Perczel, I. Csizmadia, M. Hollósi, 1996 .

Peptide models XXIX. cis-trans Isomerism of peptide bonds: ab initio study on small peptide model compound; the 3D-Ramachandran map of formylglycinamide

Imre G. Csizmadia, András Perczel, Ricardo D. Enriz, 2000 .

Investigation of penetratin peptides Part 1. The environment dependent conformational properties of penetratin and two of its derivatives

B. Penke, A. Perczel, A. Czajlik, 2002, Journal of peptide science : an official publication of the European Peptide Society.

α/β-Chimera peptide synthesis with cyclic β-sugar amino acids: the efficient coupling protocol

A. Perczel, A. Nagy, V. Farkas, 2019, Amino Acids.

A theoretical study of the stability of disulfide bridges in various β-sheet structures of protein segment models

I. Jákli, A. Perczel, B. Viskolcz, 2014 .

Toward direct determination of conformations of protein building units from multidimensional NMR experiments VI. Chemical shift analysis of his to gain 3D structure and protonation state information

András Perczel, Péter Hudáky, A. Perczel, 2005, J. Comput. Chem..

Local structural preferences of calpastatin, the intrinsically unstructured protein inhibitor of calpain.

Robert Kiss, András Perczel, R. Kiss, 2008, Biochemistry.

Infrared spectroscopic characterization of β-turns in cyclic pseudo-hexapeptides

G. Fasman, H. Mantsch, A. Perczel, 1993 .

DUckCov: a Dynamic Undocking‐Based Virtual Screening Protocol for Covalent Binders

Dávid Bajusz, András Perczel, Moira Rachman, 2019, ChemMedChem.

Novel nontoxic heat shock protein 90 inhibitors having selective antiproliferative effect.

B. Penke, A. Perczel, T. Janáky, 2006, The international journal of biochemistry & cell biology.

Local protein backbone folds determined by calculated NMR chemical shifts

András Czajlik, Ilona Hudáky, András Perczel, 2011, J. Comput. Chem..

On the unexpected formation of a new dioxopiperazine containing carbohydrate side-chains: an X-ray study

V. Fülöp, G. Fasman, A. Perczel, 1989 .

Calcium‐induced tripartite binding of intrinsically disordered calpastatin to its cognate enzyme, calpain

R. Kiss, P. Tompa, P. Dvortsák, 2008, FEBS letters.

Zn²+-induced rearrangement of the disordered TPPP/p25 affects its microtubule assembly and GTPase activity.

J. Ovádi, J. Olah, E. Hlavanda, 2011, Biochemistry.

Multidimensional NMR Identifies the Conformational Shift Essential for Catalytic Competence in the 60-kDa Drosophila melanogaster dUTPase Trimer*

K. Medzihradszky, Z. Gáspári, B. Vértessy, 2004, Journal of Biological Chemistry.

The impact of water on the ambivalent behavior and paradoxical phenomenon of the amyloid-β fibril protein

A. Perczel, T. Vajda, 2017, Biomolecular concepts.

GETTING TO GRIPS WITH HA-PROTEIN INTERACTIONS

I. Campbell, A. Perczel, P. Teriete, 2002 .

Hyperfine-Shifted 13C Resonance Assignments in an Iron−Sulfur Protein with Quantum Chemical Verification: Aliphatic C−H···S 3-Center−4-Electron Interactions

W. M. Westler, J. Markley, A. Perczel, 2011, Journal of the American Chemical Society.

Journal of Molecular Structure: Theochem - Preface

A. Perczel, I. Csizmadia, 2004 .

Ab initio characterization of building units in peptides and proteins.

A G Császár, A. Perczel, A. Császár, 1999, Progress in biophysics and molecular biology.

The clear and dark sides of water: influence on the coiled coil folding domain

A. Perczel, T. Vajda, 2016, Biomolecular concepts.

Downregulation of transposable elements extends lifespan in Caenorhabditis elegans

T. Vellai, A. Perczel, Z. Ivics, 2023, Nature communications.

A Novel Fusion Protein System for the Production of Nanobodies and the SARS-CoV-2 Spike RBD in a Bacterial System

A. Perczel, Adina Borbély, L. Nyitray, 2023, Bioengineering.

Structure and stability of beta-pleated sheets.

A. Perczel, I. Csizmadia, Zoltán Gáspári, 2005, Journal of computational chemistry.

Peptide models VII The ending of the right-handed helices in oligopeptides [For-(Ala)n-NH2 for 2 ⩽ n ⩽ 4] and in proteins

A. Perczel, I. Csizmadia, J. Ladik, 1995 .

An assessment of the chiral environment created by adjacent d- and l-alanyl residues on a glycine unit within the tripeptide N-Ac-Ala-Gly-Ala-NHMe: an ab initio exploratory study

J. Papp, J. Liao, A. Perczel, 2003 .

Conformational effects of one glycine residue on the other glycine residues in the Ac-Gly-Gly-Gly-NHMe tripeptide motif: an ab initio exploratory study

J. Papp, A. Perczel, A. Varró, 2002 .

Proteins’ fold compactness alters disulfide-bond reducibility by 3 orders of magnitude: a comprehensive kinetic case study on the reduction of different size Trp-cage model proteins

A. Perczel, E. Keszei, G. Tóth, 2019 .

An ab initio exploratory study of side chain conformations for selected backbone conformations of N-acetyl-l-glutamine-N-methylamide

R. Enriz, A. Perczel, Ana M. Rodríguez, 2001 .

Small Peptides Derived from Penetratin as Antibacterial Agents

S. Andujar, R. Enriz, A. Perczel, 2016, Archiv der Pharmazie.

How stable is a collagen triple helix? An ab initio study on various collagen and β‐sheet forming sequences

András Perczel, Villö K. Pálfi, A. Perczel, 2008, J. Comput. Chem..

Amide isomerization pathways: Electronic and structural background of protonation- and deprotonation-mediated cis-trans interconversions.

I. Jákli, A. Perczel, Dániel Horváth, 2023, The Journal of chemical physics.

Peptide models 8. The use of a modified Romberg formalism for the extrapolation of molecular properties from oligomers to polymers. Polyalanine diamide in its “extended like” or (βL)n or (C5)n conformation

A. Perczel, I. Csizmadia, J. Ladik, 1994 .

Penetratin and Derivatives Acting as Antibacterial Agents

B. Penke, R. Enriz, A. Perczel, 2013, Chemical biology & drug design.

DYNLL2 dynein light chain binds to an extended linear motif of myosin 5a tail that has structural plasticity.

W. Y. Wahlgren, G. Katona, A. Perczel, 2014, Biochemistry.

Improved Acylation of Pseudoproline: Masked Threonine in Flow Peptide Chemistry

A. Perczel, V. Farkas, Szebasztián Szaniszló, 2023, Organic Process Research & Development.

B. Penke, J. Molnár, A. Perczel, 1996 .

A new method for the interpretation of dynamics trajectories in the conformational analysis of HIV receptor mutants

B. Penke, J. Molnár, A. Perczel, 1993 .

Characteristics of Ramachandran maps of L-alanine diamides as computed by various molecular mechanics, semiempirical and ab initio MO methods.: A search for primary standard of peptide conformational stability

Imre G. Csizmadia, András Perczel, Michael A. McAllister, 1998 .

Peptide models. 18. Hydroxymethyl side-chain induced backbone conformational shifts of L-serine amide. All ab initio conformers of For-L-Ser-NH2

A. Perczel, I. Csizmadia, Ö. Farkas, 1996 .

Peptide models. 17. The role of the water molecule in peptide folding. An ab initio study on the right-handed helical conformations of N-formylglycinamide and N-formyl-L-alaninamide monohydrates [H(CONH-CHR-CONH)H·H2O; R = H or CH3]

A. Perczel, I. Csizmadia, O. Farkas, 1995 .