Seiya Watanabe

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Instructions for use Title Elucidation of stability determinants of cold-adapted monomeric isocitrate dehydrogenase from apsychrophilic bacterium , Colwellia maris , by construction of chimeric enzymes

I. Tanaka, Seiya Watanabe, Y. Yasutake, 2017 .

Elucidation of stability determinants of cold-adapted monomeric isocitrate dehydrogenase from a psychrophilic bacterium, Colwellia maris, by construction of chimeric enzymes.

I. Tanaka, Seiya Watanabe, Y. Yasutake, 2005, Microbiology.

Structure of the monomeric isocitrate dehydrogenase: evidence of a protein monomerization by a domain duplication.

Isao Tanaka, I. Tanaka, M. Yao, 2002, Structure.

Eukaryotic and Bacterial Gene Clusters Related to an Alternative Pathway of Nonphosphorylated L-Rhamnose Metabolism*

Seiya Watanabe, Masayuki Saimura, K. Makino, 2008, Journal of Biological Chemistry.

Identification and Characterization of l-Arabonate Dehydratase, l-2-Keto-3-deoxyarabonate Dehydratase, and l-Arabinolactonase Involved in an Alternative Pathway of l-Arabinose Metabolism

Seiya Watanabe, K. Makino, N. Shimada, 2006, Journal of Biological Chemistry.

Expression of protein engineered NADP+-dependent xylitol dehydrogenase increases ethanol production from xylose in recombinant Saccharomyces cerevisiae

Seiya Watanabe, S. Sawayama, A. Matsushika, 2008, Applied Microbiology and Biotechnology.

Complete Reversal of Coenzyme Specificity of Xylitol Dehydrogenase and Increase of Thermostability by the Introduction of Structural Zinc*

Seiya Watanabe, K. Makino, T. Kodaki, 2005, Journal of Biological Chemistry.

α-Ketoglutaric Semialdehyde Dehydrogenase Isozymes Involved in Metabolic Pathways of D-Glucarate, D-Galactarate, and Hydroxy-L-proline

Seiya Watanabe, K. Makino, I. Ohtsu, 2007, Journal of Biological Chemistry.

Characterization of l-2-keto-3-deoxyfuconate aldolases in a nonphosphorylating l-fucose metabolism pathway in anaerobic bacteria

Seiya Watanabe, 2020, Journal of Biological Chemistry.

Characterization of l-2-keto-3-deoxyfuconate aldolases in a nonphosphorylating l-fucose metabolism pathway in anaerobic bacteria

Seiya Watanabe, 2019, The Journal of Biological Chemistry.

Identification and Characterization of Bifunctional Proline Racemase/Hydroxyproline Epimerase from Archaea: Discrimination of Substrates and Molecular Evolution

Seiya Watanabe, Yasuo Watanabe, Yoshiaki Tanimoto, 2015, PloS one.

New Approach of Highly Efficient Fermentation Process for Bio ethanol using Xylose as Agricultur e Residues

Seiya Watanabe, S. Hamdan, K. Makino, 2017 .

Crystal structure of trans-3-Hydroxy-L-proline dehydratase in complex with substrate - closed conformation

R. Miggiano, M. Rizzi, Seiya Watanabe, 2019 .

Identification and characterization of trans-3-hydroxy-l-proline dehydratase and Δ1-pyrroline-2-carboxylate reductase involved in trans-3-hydroxy-l-proline metabolism of bacteria

Seiya Watanabe, Yasuo Watanabe, S. Sawayama, 2014, FEBS open bio.

Ornithine cyclodeaminase/μ-crystallin homolog from the hyperthermophilic archaeon Thermococcus litoralis functions as a novel Δ1-pyrroline-2-carboxylate reductase involved in putative trans-3-hydroxy-l-proline metabolism

Seiya Watanabe, Yasuo Watanabe, Y. Tozawa, 2014, FEBS open bio.

Construction of various mutants of xylose metabolizing enzymes for efficient conversion of biomass to ethanol.

Narayana Annaluru, Seiya Watanabe, K. Makino, 2006, Nucleic acids symposium series.

Crystal structure of l‐rhamnose 1‐dehydrogenase involved in the nonphosphorylative pathway of l‐rhamnose metabolism in bacteria

Seiya Watanabe, Yasunori Watanabe, K. Yoshiwara, 2021, FEBS letters.

Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily

Seiya Watanabe, K. Tajima, Yohsuke Murase, 2021, Communications Biology.

Crystal structure of bacterial L-arabinose 1-dehydrogenase in complex with L-arabinose and NADP.

Seiya Watanabe, Yasunori Watanabe, K. Yoshiwara, 2020, Biochemical and biophysical research communications.

Biochemical and structural characterization of L-2-keto-3-deoxyarabinonate dehydratase: A unique catalytic mechanism in the Class I aldolase protein superfamily.

Seiya Watanabe, Yasunori Watanabe, R. Nobuchi, 2020, Biochemistry.

Characterization of Flavin-Containing Opine Dehydrogenase from Bacteria

Seiya Watanabe, Yasuo Watanabe, F. Fukumori, 2015, PloS one.

A bienzyme electrochemical biosensor for the detection of collagen l-hydroxyproline

Kazuya Watanabe, S. Suye, Seiya Watanabe, 2015 .

Breeding of a xylose-fermenting hybrid strain by mating genetically engineered haploid strains derived from industrial Saccharomyces cerevisiae

Seiya Watanabe, S. Sawayama, A. Matsushika, 2014, Journal of Industrial Microbiology & Biotechnology.

Preliminary crystallographic analysis of l-2-keto-3-deoxyarabonate dehydratase, an enzyme involved in an alternative bacterial pathway of l-arabinose metabolism

B. Mikami, Seiya Watanabe, K. Makino, 2007, Acta crystallographica. Section F, Structural biology and crystallization communications.

Cloning, Expression, and Characterization of Bacterial l-Arabinose 1-Dehydrogenase Involved in an Alternative Pathway of l-Arabinose Metabolism*

Seiya Watanabe, K. Makino, Tsutomu Kodak, 2006, Journal of Biological Chemistry.

Functional characterization of aconitase X as a cis-3-hydroxy-L-proline dehydratase

Seiya Watanabe, S. Fujii, K. Kino, 2016, Scientific Reports.

Identification and characterization of d-arabinose reductase and d-arabinose transporters from Pichia stipitis

Seiya Watanabe, Yasuo Watanabe, S. Sawayama, 2016, Bioscience, biotechnology, and biochemistry.

Efficient preparation of amine-modified oligodeoxynucleotide using modified H-phosphonate chemistry for DNA microarray fabrication

S. Pack, Seiya Watanabe, K. Makino, 2007, Analytical and bioanalytical chemistry.

Bioethanol production from xylose by recombinant Saccharomyces cerevisiae expressing xylose reductase, NADP(+)-dependent xylitol dehydrogenase, and xylulokinase.

Shigeki Sawayama, Seiya Watanabe, S. Sawayama, 2008, Journal of bioscience and bioengineering.

Thermostabilization of Pichia stipitis xylitol dehydrogenase by mutation of structural zinc-binding loop.

Seung Pil Pack, Narayana Annaluru, S. Pack, 2007, Journal of biotechnology.

A novel strictly NADPH-dependent Pichia stipitis xylose reductase constructed by site-directed mutagenesis.

Seiya Watanabe, Masayuki Saimura, T. Kodaki, 2011, Biochemical and biophysical research communications.

Ethanol production from xylose by recombinant Saccharomyces cerevisiae expressing protein engineered NADP+-dependent xylitol dehydrogenase.

Seung Pil Pack, Narayana Annaluru, S. Pack, 2007, Journal of biotechnology.

Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP

I. Tanaka, M. Yao, Seiya Watanabe, 2003 .

Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP+

I. Tanaka, M. Yao, Seiya Watanabe, 2003, Journal of Biological Chemistry.

Identification and Characterization of d-Hydroxyproline Dehydrogenase and Δ1-Pyrroline-4-hydroxy-2-carboxylate Deaminase Involved in Novel l-Hydroxyproline Metabolism of Bacteria

Daichi Morimoto, Yasuo Watanabe, Seiya Watanabe, 2012, The Journal of Biological Chemistry.

Isolation of cellulase-producing Microbulbifer sp. from marine teleost blackfish (Girella melanichthys) intestine and the enzyme characterization.

Seiya Watanabe, S. Suzuki, Ken-ichiro Ohnishi, 2020, The Journal of general and applied microbiology.

Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon.

Seiya Watanabe, Yasunori Watanabe, Yoshika Itoh, 2019, Biochemical and biophysical research communications.

An enzymatic method to estimate the content of L-hydroxyproline.

Seiya Watanabe, Yasuo Watanabe, Y. Tozawa, 2015, Journal of biotechnology.

Dye-Linked Flavin-Containing Dehydrogenase from Bacteria Related to Plant

Seiya Watanabe, 2018, Symbiosis.

Characterization of cis-4-hydroxy-D-proline dehydrogenase from Sinorhizobium meliloti

Seiya Watanabe, Yasuo Watanabe, F. Fukumori, 2018, Bioscience, biotechnology, and biochemistry.

Characterization of a Novel cis-3-Hydroxy-l-Proline Dehydratase and a trans-3-Hydroxy-l-Proline Dehydratase from Bacteria

Seiya Watanabe, Yasuo Watanabe, F. Fukumori, 2017, Journal of bacteriology.

Characterization of iron-sulfur clusters in flavin-containing opine dehydrogenase

Seiya Watanabe, Yasuo Watanabe, K. Tajima, 2016, Bioscience, biotechnology, and biochemistry.

Purification and Characterization of a Cold-adapted Isocitrate Lyase and a Malate Synthase from Colwellia maris, a Psychrophilic Bacterium

Seiya Watanabe, Y. Takada, N. Fukunaga, 2001, Bioscience, biotechnology, and biochemistry.

Amino acid residues involved in cold adaptation of isocitrate lyase from a psychrophilic bacterium, Colwellia maris.

Seiya Watanabe, Y. Takada, 2004, Microbiology.

Amino acid residues involved in cold adaptation of isocitrate lyase from a psychrophilic bacterium , Colwellia

Seiya Watanabe, Y. Takada, 2004 .

The cold-inducible icl gene encoding thermolabile isocitrate lyase of a psychrophilic bacterium, Colwellia maris.

Seiya Watanabe, Y. Takada, N. Fukunaga, 2002, Microbiology.

Gene cloning of cold-adapted isocitrate lyase from a psychrophilic bacterium, Colwellia psychrerythraea, and analysis of amino acid residues involved in cold adaptation of this enzyme

Seiya Watanabe, Y. Takada, N. Yamaoka, 2007, Extremophiles.

RNAi Knockdown of Potent Sugar Sensor in Cellulase-Producing Fungus Acremonium cellulolyticus

K. Ishikawa, Seiya Watanabe, S. Sawayama, 2014, Applied Biochemistry and Biotechnology.

Structural basis for interorganelle phospholipid transport mediated by VAT-1

Seiya Watanabe, T. Endo, Y. Tamura, 2020, The Journal of Biological Chemistry.

Structural Basis for Phosphatidylethanolamine Biosynthesis by Bacterial Phosphatidylserine Decarboxylase.

Seiya Watanabe, Yasunori Watanabe, Yasuo Watanabe, 2020, Structure.

Molecular evolutionary insight of structural zinc atom in yeast xylitol dehydrogenases and its application in bioethanol production by lignocellulosic biomass

Seiya Watanabe, Yasunori Watanabe, K. Yoshiwara, 2023, Scientific Reports.

Diversity in Guanosine 3′,5′-Bisdiphosphate (ppGpp) Sensitivity among Guanylate Kinases of Bacteria and Plants*

Y. Nakahira, A. Weber, Seiya Watanabe, 2014, The Journal of Biological Chemistry.

Generation of Xylose-Fermenting Saccharomyces cerevisiae by Protein-Engineering

Seiya Watanabe, 2009 .

In vitro synthesis of phospholipids with yeast phospholipase B, a phospholipid deacylating enzyme

Seiya Watanabe, Yasuo Watanabe, Itsuki Kobayashi, 2018, Biotechnology reports.

Purification and characterization of a cold-adapted isocitrate lyase and expression analysis of the cold-inducible isocitrate lyase gene from the psychrophilic bacterium Colwellia psychrerythraea

Naoto Yamaoka, Seiya Watanabe, Y. Takada, 2002, Extremophiles.

A novel alpha-ketoglutaric semialdehyde dehydrogenase: evolutionary insight into an alternative pathway of bacterial L-arabinose metabolism.

Seiya Watanabe, K. Makino, T. Kodaki, 2006, The Journal of biological chemistry.

Ethanol production from xylose by recombinant Saccharomyces cerevisiae expressing protein-engineered NADH-preferring xylose reductase from Pichia stipitis.

Seung Pil Pack, Narayana Annaluru, S. Pack, 2007, Microbiology.

Novel non-phosphorylative pathway of pentose metabolism from bacteria

Seiya Watanabe, Yasuo Watanabe, K. Tajima, 2019, Scientific Reports.

Novel modified version of nonphosphorylated sugar metabolism – an alternative l‐rhamnose pathway of Sphingomonas sp.

Seiya Watanabe, K. Makino, 2009, The FEBS journal.

Substrate and metabolic promiscuities of d‐altronate dehydratase family proteins involved in non‐phosphorylative d‐arabinose, sugar acid, l‐galactose and l‐fucose pathways from bacteria

Seiya Watanabe, Yasuo Watanabe, F. Fukumori, 2019, Molecular microbiology.

Structural insights into the catalytic and substrate recognition mechanisms of bacterial l-arabinose 1-dehydrogenase.

Seiya Watanabe, Y. Watanabe, C. Iga, 2019 .

Structural insights into the catalytic and substrate recognition mechanisms of bacterial l‐arabinose 1‐dehydrogenase

Seiya Watanabe, Yasunori Watanabe, Y. Watanabe, 2019, FEBS letters.

Efficient Bioethanol Production by a Recombinant Flocculent Saccharomyces cerevisiae Strain with a Genome-Integrated NADP+-Dependent Xylitol Dehydrogenase Gene

Seiya Watanabe, S. Sawayama, A. Matsushika, 2009, Applied and Environmental Microbiology.

Metabolic fate of l‐lactaldehyde derived from an alternative l‐rhamnose pathway

Seiya Watanabe, K. Makino, Sommani Piyanart, 2008, The FEBS journal.

Construction of a Novel Strictly NADPH- Dependent Pichia stipitis Xylose Reductase by Site-Directed Mutagenesis for Effective Bioethanol Production

Seiya Watanabe, Masayuki Saimura, T. Kodaki, 2011 .

The Positive Effect of the Decreased NADPH-Preferring Activity of Xylose Reductase from Pichia stipitis on Ethanol Production Using Xylose-Fermenting Recombinant Saccharomyces cerevisiae

Seung Pil Pack, Narayana Annaluru, S. Pack, 2007, Bioscience, biotechnology, and biochemistry.

Base sequence- and Tm-dependent DNA oligomer separation by open tubular capillary columns carrying complementary DNA oligomers as probes

S. Pack, Seiya Watanabe, K. Makino, 2007, Analytical and bioanalytical chemistry.

Functional and structural characterization of a novel L-fucose mutarotase involved in non-phosphorylative pathway of L-fucose metabolism.

Seiya Watanabe, Yasunori Watanabe, H. Nishiwaki, 2020, Biochemical and biophysical research communications.

Monitoring Technology for Gamma-Aminobutyric acid Production in Polished Mochi Barley Grains using a Carbon Dioxide Sensor.

Seiya Watanabe, Yasuo Watanabe, K. Kawata, 2015, Journal of food science.

Production of gamma-aminobutyric acid in mules barley bran.

Seiya Watanabe, Yasuo Watanabe, Kousaku Maeda, 2012 .

Crystal Structure of l-2,4-Diketo-3-deoxyrhamnonate Hydrolase Involved in the Nonphosphorylated l-Rhamnose Pathway from Bacteria.

Seiya Watanabe, Yasunori Watanabe, H. Nishiwaki, 2022, Biochemistry.

Structure of Thermococcus litoralis trans-3-hydroxy-l-proline dehydratase in the free and substrate-complexed form.

R. Miggiano, M. Rizzi, Seiya Watanabe, 2019, Biochemical and biophysical research communications.