S. Yokobori

发表

Designing thermostable proteins: ancestral mutants of 3-isopropylmalate dehydrogenase designed by using a phylogenetic tree.

Keiko Watanabe, Akihiko Yamagishi, Shin-ichi Yokobori, 2006, Journal of molecular biology.

Phylogeny-based design of a B-subunit of DNA gyrase and its ATPase domain using a small set of homologous amino acid sequences.

S. Akanuma, A. Yamagishi, S. Yokobori, 2011, Journal of molecular biology.

Bacterial survival in response to desiccation and high humidity at above zero and subzero temperatures

A. Yamagishi, S. Yokobori, Yinjie Yang, 2009 .

Tanpopo: Astrobiology Exposure and Micrometeoroid Capture Experiments— Proposed Experiments at the Exposure Facility of ISS-JEM

H. Kawai, H. Yano, H. Yabuta, 2014 .

The Possible Interplanetary Transfer of Microbes: Assessing the Viability of Deinococcus spp. Under the ISS Environmental Conditions for Performing Exposure Experiments of Microbes in the Tanpopo Mission

Yuta Takahashi, A. Yamagishi, S. Yokobori, 2013, Origins of Life and Evolution of Biospheres.

Prolonged survival of multilayer bacteria under UV radiation and vacuum

Akihiko, Yamagishi, S. Yokobori, 2011 .

TANPOPO: Astrobiology Exposure and Micrometeoroid Capture Experiments

H. Kawai, H. Yano, A. Yamagishi, 2007 .

Ultralow-density double-layer silica aerogel fabrication for the intact capture of cosmic dust in low-Earth orbits

H. Kawai, H. Yano, A. Yamagishi, 2015, Journal of Sol-Gel Science and Technology.

Experimental evidence for the thermophilicity of ancestral life

S. Akanuma, K. Miyazono, M. Tanokura, 2013, Proceedings of the National Academy of Sciences.

Mitogenome analysis of dwarf pufferfish (Carinotetraodon travancoricus) endemic to southwest India and its implications in the phylogeny of Tetraodontidae

S. Yokobori, Chandhini Sathyajith, Y. Yamanoue, 2019, Journal of Genetics.

Reconstructed ancestral enzymes suggest long-term cooling of Earth’s photic zone since the Archean

Satoshi Akanuma, Akihiko Yamagishi, Shin-ichi Yokobori, 2017, Proceedings of the National Academy of Sciences.

Quest for Ancestors of Eukaryal Cells Based on Phylogenetic Analyses of Aminoacyl-tRNA Synthetases

A. Yamagishi, S. Yokobori, Ryutaro Furukawa, 2016, Journal of Molecular Evolution.

Investigation of the Interplanetary Transfer of Microbes in the Tanpopo Mission at the Exposed Facility of the International Space Station.

H. Kawai, H. Yano, A. Yamagishi, 2016, Astrobiology.

Investigation of cultivable microorganisms in the stratosphere collected by using a balloon in 2005

Kazuhiko Yamada, A. Yamagishi, S. Yokobori, 2009 .

UV-resistant bacteria isolated from upper troposphere and lower stratosphere

A. Yamagishi, S. Yokobori, Yinjie Yang, 2008 .

Space Exposure of Amino Acids and Their Precursors in the Tanpopo Mission Using the International Space Station

H. Yabuta, A. Yamagishi, S. Yokobori, 2014 .

Deinococcus aerius sp. nov., isolated from the high atmosphere.

Takashi Itoh, Akihiko Yamagishi, Issay Narumi, 2009, International journal of systematic and evolutionary microbiology.

DNA Damage and Survival Time Course of Deinococcal Cell Pellets During 3 Years of Exposure to Outer Space

J. Yatabe, A. Yamagishi, S. Yokobori, 2020, Frontiers in Microbiology.

Draft Genome Sequence of the Radioresistant Bacterium Deinococcus aerius TR0125, Isolated from the High Atmosphere above Japan

H. Hayashi, A. Yamagishi, S. Yokobori, 2018, Genome Announcements.

STXM-XANES analyses of Murchison meteorite samples captured by aerogel after hypervelocity impacts: A potential implication of organic matter degradation for micrometeoroid collection experiments

H. Yano, S. Hasegawa, H. Yabuta, 2016, GEOCHEMICAL JOURNAL.

An Actin Homolog of the Archaeon Thermoplasma acidophilum That Retains the Ancient Characteristics of Eukaryotic Actin

A. Yamagishi, S. Yokobori, S. Hisanaga, 2006, Journal of bacteriology.

Enzymatic and crystallographic characterization of archaeal tRNA splicing endonuclease

S. Yokobori, H. Hori, Chikako Iwashita, 2009, 2009 International Symposium on Micro-NanoMechatronics and Human Science.

Fluorescence imaging of microbe-containing particles shot from a two-stage Light-gas gun into an aerogel

H. Kawai, H. Yano, S. Hasegawa, 2014, Origins of Life and Evolution of Biospheres.

Tolerance of anhydrobiotic eggs of the Tardigrade Ramazzottius varieornatus to extreme environments.

Masahiko Watanabe, L. Rothschild, M. Kuwabara, 2012, Astrobiology.

Japan Astrobiology Mars Project (JAMP): Search for Microbes on The Mars Surface with Special Interest in Methane-Oxidizing Bacteria

T. Kubota, Y. Utsumi, J. Haruyama, 2010 .

Induction profile of HSP70-cognate genes by environmental pollutants in Chironomidae.

S. Yokobori, T. Miura, T. Yoshimi, 2009, Environmental toxicology and pharmacology.

Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein

Yutaka Suzuki, M. Oyama, Y. Kohara, 2016, Nature Communications.

Establishment of mesophilic-like catalytic properties in a thermophilic enzyme without affecting its thermal stability

S. Akanuma, A. Yamagishi, S. Yokobori, 2019, Scientific Reports.

Scientific Targets of Tanpopo: Astrobiology Exposure and Micrometeoroid Capture Experiments at the Japanese Experiment Module Exposed Facility of the International Space Station.

H. Yano, H. Yabuta, A. Yamagishi, 2021, Astrobiology.

The complete mitochondrial genome of Caprella scaura (Crustacea, Amphipoda, Caprellidea), with emphasis on the unique gene order pattern and duplicated control region

S. Yokobori, H. Wada, Atsushi Ito, 2010, Mitochondrial DNA.

Evolution of pulmonate gastropod mitochondrial genomes: comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures.

R. H. Thomas, K Nishikawa, K Watanabe, 1997, Genetics.

Decoding Mechanism of Non-universal Genetic Codes in Loligo bleekeri Mitochondria*

Tsutomu Suzuki, A. Yamagishi, S. Yokobori, 2013, The Journal of Biological Chemistry.

Tolerance of Dried Cells of a Terrestrial Cyanobacterium, Nostoc sp. HK-01 to Temperature Cycles, Helium-ion Beams, Ultraviolet Radiation (172 and 254 nm), and Gamma Rays: Primitive Analysis for Space Experiments

M. Ohmori, Shunta Kimura, M. Ong, 2020 .

Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote

K. Katoh, A. Yamagishi, S. Yokobori, 2022, Journal of Molecular Evolution.

Hydroxylation of a conserved tRNA modification establishes non-universal genetic code in echinoderm mitochondria

Tsutomu Suzuki, A. Yamagishi, S. Yokobori, 2017, Nature Structural &Molecular Biology.

Potential speciation of morphotypes in the photosymbiotic ascidian Didemnum molle in the Ryukyu Archipelago, Japan

S. Yokobori, E. Hirose, M. Hirose, 2009, Coral Reefs.

Mitochondrial genome structure and evolution in the living fossil vampire squid, Vampyroteuthis infernalis, and extant cephalopods.

Akihiko Yamagishi, Shin-ichi Yokobori, Tairo Oshima, 2007, Molecular phylogenetics and evolution.

tRNA Modification and Genetic Code Variations in Animal Mitochondria

Shin-ichi Yokobori, S. Yokobori, Kimitsuna Watanabe, 2011, Journal of nucleic acids.

Complete nucleotide sequences of mitochondrial genomes of two solitary entoprocts, Loxocorone allax and Loxosomella aloxiata: implications for lophotrochozoan phylogeny.

Takashi Sasaki, N. Shimizu, S. Asakawa, 2008, Molecular phylogenetics and evolution.

The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria.

S. Pääbo, N. Satoh, S. Yokobori, 1998, Genetics.

Comparative Genomics of Thermophilic Bacteria and Archaea

S. Akanuma, A. Yamagishi, S. Yokobori, 2013 .

Introns in protein‐coding genes in Archaea

Akihiko Yamagishi, Shin-ichi Yokobori, Tairo Oshima, 2002, FEBS letters.

Male death resulting from hybridization between subspecies of the gypsy moth, Lymantria dispar

S. Yokobori, T. Fukatsu, H. Yamagata, 2011, Heredity.

Evolution of the Genetic Code

S. Yokobori, T. Ueda, Kimitsuna Watanabe, 2010 .

Codons AGA and AGG are read as glycine in ascidian mitochondria

S. Yokobori, T. Ueda, Kimitsuna Watanabe, 2006, Journal of Molecular Evolution.

Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes.

T. Oshima, S. Yokobori, N. Fukuda, 2004, Molecular biology and evolution.

Relationship among coelacanths, lungfishes, and tetrapods: A phylogenetic analysis based on mitochondrial cytochrome oxidase I gene sequences

M. Hasegawa, N. Okada, S. Yokobori, 1994, Journal of Molecular Evolution.

Mitochondrial Genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): Comparison of Gene Arrangement and tRNA Genes with Halocynthia roretzi Mitochondrial Genome

T. Oshima, S. Yokobori, Yukari Watanabe, 2003, Journal of Molecular Evolution.

How the Early Genetic Code Was Established?: Inference from the Analysis of Extant Animal Mitochondrial Decoding Systems

S. Yokobori, Kimitsuna Watanabe, 2014 .

tRNA editing in metazoans

S. Pääbo, S. Yokobori, 1995, Nature.

Genetic Code: Introduction

S. Yokobori, Kimitsuna Watanabe, 2002 .

Purification and characterization of pepsinogens from the gastric mucosa of African coelacanth, Latimeria chalumnae, and properties of the major pepsins.

Hisashi Ito, S. Yokobori, Kenji Takahashi, 2007, Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology.

Complete nucleotide sequence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates.

T. Oshima, S. Yokobori, H. Wada, 2005, Molecular phylogenetics and evolution.

Genetic Code Variations in Mitochondria: tRNA as a Major Determinant of Genetic Code Plasticity

Shin-ichi Yokobori, Tsutomu Suzuki, Tsutomu Suzuki, 2001, Journal of Molecular Evolution.

RNA editing in metazoan mitochondria: staying fit without sex

S. Pääbo, M. Mörl, S. Yokobori, 1997, FEBS letters.

Polyadenylation creates the discriminator nucleotide of chicken mitochondrial tRNA(Tyr).

S. Pääbo, S. Yokobori, 1997, Journal of molecular biology.

Transfer RNA editing in land snail mitochondria.

S. Pääbo, S. Yokobori, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Multiple origins of the ascidian-Prochloron symbiosis: molecular phylogeny of photosymbiotic and non-symbiotic colonial ascidians inferred from 18S rDNA sequences.

Tadashi Maruyama, Brett A Neilan, A. Kurabayashi, 2006, Molecular phylogenetics and evolution.

The Cephalopod Loligo bleekeri Mitochondrial Genome: Multiplied Noncoding Regions and Transposition of tRNA Genes

T. Oshima, S. Yokobori, T. Ueda, 2002, Journal of Molecular Evolution.

Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata).

S. Pääbo, K. Watanabe, S. Yokobori, 1999, Genetics.

Gene Contents and Organization of a Mitochondrial DNA Segment of the Squid Loligo bleekeri

S. Yokobori, T. Ueda, K. Nishikawa, 1999, Journal of Molecular Evolution.

An extra tRNA Gly (U*CU) found in ascidian mitochondria responsible for decoding non-universal codons

Tsutomu Suzuki, S. Yokobori, T. Ueda, 1999 .

Ascidian mitochondrial tRNA(Met) possessing unique structural characteristics.

K. Watanabe, S. Yokobori, T. Ueda, 1998, Nucleosides & nucleotides.

Repetitive sequences in the lamprey mitochondrial DNA control region and speciation of Lethenteron.

S. Yokobori, H. Wada, K. Okada, 2010, Gene.

Characterization and phylogenetic position of two sympatric sister species of toxic flatworms Planocera multitentaculata and Planocera reticulata (Platyhelminthes: Acotylea)

S. Asakawa, S. Yokobori, K. Yoshitake, 2020, Mitochondrial DNA Part B.

Improvement of Bacillus circulans beta-amylase activity attained using the ancestral mutation method.

A. Yamagishi, S. Yokobori, S. Koikeda, 2010, Protein engineering, design & selection : PEDS.

The substrate specificity of tRNA (m1G37) methyltransferase (TrmD) from Aquifex aeolicus

Tsutomu Suzuki, T. Oshima, S. Yokobori, 2006, Genes to cells : devoted to molecular & cellular mechanisms.

Thermostability of ancestral mutants of Caldococcus noboribetus isocitrate dehydrogenase.

A. Yamagishi, T. Ohkuri, Keiko Watanabe, 2005, FEMS microbiology letters.

The phylogenetic status of Paxillosida (Asteroidea) based on complete mitochondrial DNA sequences.

S. Asakawa, S. Yokobori, H. Wada, 2005, Molecular phylogenetics and evolution.

An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine.

K. Watanabe, S. Yokobori, T. Ueda, 1999, Nucleic acids research.

Updated mitochondrial phylogeny of Pteriomorph and Heterodont Bivalvia, including deep-sea chemosymbiotic Bathymodiolus mussels, vesicomyid clams and the thyasirid clam Conchocele cf. bisecta.

T. Maruyama, S. Yokobori, K. Takishita, 2017, Marine genomics.

Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene

Takashi Itoh, Akihiko Yamagishi, Shin-ichi Yokobori, 2009, BMC Evolutionary Biology.

Archaeal pre-mRNA splicing: a connection to hetero-oligomeric splicing endonuclease.

E. Delong, S. Hallam, T. Oshima, 2006, Biochemical and biophysical research communications.

A bacterial elongation factor G homologue exclusively functions in ribosome recycling in the spirochaete Borrelia burgdorferi

S. Yokobori, T. Ueda, K. Kita, 2010, Molecular microbiology.

Ancestral amino acid substitution improves the thermal stability of recombinant lignin-peroxidase from white-rot fungi, Phanerochaete chrysosporium strain UAMH 3641.

A. Yamagishi, S. Yokobori, Manabu Ishida, 2015, Protein engineering, design & selection : PEDS.

Space Exposure of Amino Acids and Their Precursors during the Tanpopo Mission.

H. Yano, A. Yamagishi, S. Yokobori, 2021, Astrobiology.

Arabidopsis thaliana mitochondrial EF-G1 functions in two different translation steps.

S. Yokobori, K. Kita, Yoh‐ichi Watanabe, 2014, Journal of biochemistry.

Birth of Archaeal Cells: Molecular Phylogenetic Analyses of G1P Dehydrogenase, G3P Dehydrogenases, and Glycerol Kinase Suggest Derived Features of Archaeal Membranes Having G1P Polar Lipids

S. Akanuma, A. Yamagishi, S. Yokobori, 2016, Archaea.

Structural analysis of the plasmid pTA1 isolated from the thermoacidophilic archaeon Thermoplasma acidophilum

T. Oshima, A. Yamagishi, S. Yokobori, 2006, Extremophiles.

Evolution of Eukaryotic DNA Polymerases via Interaction Between Cells and Large DNA Viruses

H. Ogata, S. Yokobori, M. Takemura, 2015, Journal of Molecular Evolution.

Life without tRNAArg–adenosine deaminase TadA: evolutionary consequences of decoding the four CGN codons as arginine in Mycoplasmas and other Mollicutes

Y. Bessho, S. Yokobori, H. Grosjean, 2013, Nucleic acids research.

Mutation Analysis of the rpoB Gene in the Radiation-Resistant Bacterium Deinococcus radiodurans R1 Exposed to Space during the Tanpopo Experiment at the International Space Station.

J. Yatabe, A. Yamagishi, S. Yokobori, 2017, Astrobiology.

Assessing Panspermia Hypothesis by Microorganisms Collected from The High Altitude Atmosphere

A. Yamagishi, S. Yokobori, Yinjie Yang, 2009 .

Robustness of predictions of extremely thermally stable proteins in ancient organisms

Satoshi Akanuma, Akihiko Yamagishi, Shin-ichi Yokobori, 2015, Evolution; international journal of organic evolution.

Extremely thermophilic translation system in the common ancestor commonote: ancestral mutants of Glycyl-tRNA synthetase from the extreme thermophile Thermus thermophilus.

A. Yamagishi, T. Ohkuri, S. Yokobori, 2007, Journal of molecular biology.

Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote

K. Katoh, A. Yamagishi, S. Yokobori, 2022, Journal of molecular evolution.

Taurine-containing Uridine Modifications in tRNA Anticodons Are Required to Decipher Non-universal Genetic Codes in Ascidian Mitochondria*

Tsutomu Suzuki, A. Yamagishi, S. Yokobori, 2011, The Journal of Biological Chemistry.

Epistasis effects of multiple ancestral-consensus amino acid substitutions on the thermal stability of glycerol kinase from Cellulomonas sp. NT3060.

S. Akanuma, A. Yamagishi, S. Yokobori, 2016, Journal of bioscience and bioengineering.

Evolution of Superoxide Dismutases and Catalases in Cyanobacteria: Occurrence of the Antioxidant Enzyme Genes before the Rise of Atmospheric Oxygen

A. Yamagishi, S. Yokobori, Ryutaro Furukawa, 2021, Journal of Molecular Evolution.

Fluorescence imaging of microbe-containing particles shot from a two-stage Light-gas gun into an aerogel

H. Kawai, H. Yano, S. Hasegawa, 2014, Origins of Life and Evolution of Biospheres.

Design of a silica-aerogel-based cosmic dust collector for the Tanpopo mission aboard the International Space Station

H. Kawai, H. Yano, H. Yabuta, 2014, 1406.3160.

Tanpopo Cosmic Dust Collector: Silica Aerogel Production and Bacterial DNA Contamination Analysis

H. Kawai, H. Yano, A. Yamagishi, 2011, 1112.6224.

RECONSTRUCTED ANCESTRAL ENZYMES SUGGEST THAT EARTH'S PHOTIC-ZONE TEMPERATURE MARKEDLY DECREASED OVER GEOLOGIC TIME

S. Akanuma, A. Yamagishi, S. Yokobori, 2016 .

Planktonic adaptive evolution to the sea surface temperature in the Neoproterozoic inferred from ancestral NDK of marine cyanobacteria

A. Yamagishi, S. Yokobori, Ryutaro Furukawa, 2019, Earth and Planetary Science Letters.

Functional reconstitution of a crenarchaeal splicing endonuclease in vitro.

R. Masui, S. Kuramitsu, S. Yokobori, 2005, Biochemical and biophysical research communications.

[Intron and pre-mRNA splicing of bacteria and Archaea].

Y. Kawarabayasi, S. Yokobori, Yoh‐ichi Watanabe, 2002, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.

A. Yamagishi, S. Yokobori, M. Takasu, 2013, Origins of Life and Evolution of Biospheres.

The genetic code of a squid mitochondrial gene.

S. Yokobori, H. Himeno, Kimitsuna Watanabe, 1990, Nucleic acids symposium series.