Jianwen Fang

发表

In Silico Classification of Proteins from Acidic and Neutral Cytoplasms

C. R. Middaugh, Yaping Fang, Jianwen Fang, 2012, PloS one.

Prots: A fragment based protein thermo‐stability potential

Jian Zhang, Jianwen Fang, Yang Zhang, 2012, Proteins.

A Network-based Analysis of Polyanion-binding Proteins Utilizing Human Protein Arrays*

Mario Albrecht, Jianwen Fang, C Russell Middaugh, 2007, Journal of Biological Chemistry.

Molecular genomic features associated with in vitro response of the NCI‐60 cancer cell line panel to natural products

Jason R. Evans, L. McShane, Yingdong Zhao, 2020, Molecular oncology.

Inferences of drug responses in cancer cells from cancer genomic features and compound chemical and therapeutic properties

Yongcui Wang, Shilong Chen, Jianwen Fang, 2016, Scientific Reports.

The Rationale for Targeting the NAD/NADH Cofactor Binding Site of Parasitic S-Adenosyl-L-Homocysteine Hydrolase for the Design of Anti-Parasitic Drugs

K. Kuczera, R. Borchardt, C. R. Middaugh, 2009, Nucleosides, nucleotides & nucleic acids.

PROTS-RF: A Robust Model for Predicting Mutation-Induced Protein Stability Changes

Jianwen Fang, Yunqi Li, Jianwen Fang, 2012, PloS one.

Bioinformatic analysis of xenobiotic reactive metabolite target proteins and their interacting partners

Jianwen Fang, R. Hanzlik, Y. Koen, 2009, BMC chemical biology.

Discover protein sequence signatures from protein-protein interaction data

Jianwen Fang, Gerald H. Lushington, Yinghua Dong, 2005, BMC Bioinformatics.

A Network-based Analysis of Polyanion-binding Proteins Utilizing Yeast Protein Arrays*S

Aaron M. Smalter, M. Albrecht, Y. Assenov, 2006, Molecular & Cellular Proteomics.

A three-dimensional molecular model of lipid-free apolipoprotein A-I determined by cross-linking/mass spectrometry and sequence threading.

Jianwen Fang, W. Davidson, S. Macha, 2005, Biochemistry.

Novel Ricin Subunit Antigens With Enhanced Capacity to Elicit Toxin-Neutralizing Antibody Responses in Mice.

J. Karanicolas, D. Jacobs, S. Joshi, 2016, Journal of pharmaceutical sciences.

Effect of single-point mutations on the stability and immunogenicity of a recombinant ricin A chain subunit vaccine antigen

J. Karanicolas, S. Joshi, D. Volkin, 2013, Human vaccines & immunotherapeutics.

Bioinformatics Tools and Resources for Cancer Immunotherapy Study.

Dmitriy Sonkin, L. McShane, Yingdong Zhao, 2020, Methods in molecular biology.

Prediction of core cancer genes using multi-task classification framework.

Yaping Fang, Jianwen Fang, Shuo Xu, 2013, Journal of theoretical biology.

Exome sequencing reveals a thrombopoietin ligand mutation in a Micronesian family with autosomal recessive aplastic anemia.

Nathan R. Wilson, I. Saadi, Jianwen Fang, 2013, Blood.

Bioinformatic analysis of 302 reactive metabolite target proteins. Which ones are important for cell death?

Jianwen Fang, R. Hanzlik, Y. Koen, 2013, Toxicological sciences : an official journal of the Society of Toxicology.

Gene polymorphism of vascular endothelial growth factor −1154 G>A is associated with hypertensive nephropathy in a Hispanic population

D. Min, Jianwen Fang, I. Hutchinson, 2011, Molecular Biology Reports.

A Three-dimensional Homology Model of Lipid-free Apolipoprotein A-IV Using Cross-linking and Mass Spectrometry*

Jianwen Fang, P. Tso, W. Davidson, 2008, Journal of Biological Chemistry.

Canine cathelicidin (K9CATH): gene cloning, expression, and biochemical activity of a novel pro-myeloid antimicrobial peptide.

F. Blecha, Y. Sang, Jianwen Fang, 2007, Developmental and comparative immunology.

Recent Advances in the Aging Microenvironment of Breast Cancer

Jianwen Fang, P. Fu, Yuexin Lu, 2022, Cancers.

A computational study of the inhibition mechanisms of P-glycoprotein mediated paclitaxel efflux by kinase inhibitors

R. Simon, Jianwen Fang, J. Bender, 2017, BMC Systems Biology.

Finding minimum gene subsets with heuristic breadth-first search algorithm for robust tumor classification

Shu-Lin Wang, Jianwen Fang, Xueling Li, 2012, BMC Bioinformatics.

Evaluation of NAD(H) Analogues as Selective Inhibitors for Trypanosoma Cruzi S-Adenosylhomocysteine Hydrolase

K. Kuczera, R. Borchardt, R. Schowen, 2009, Nucleosides, nucleotides & nucleic acids.

Transcriptome profiling and genome-wide DNA binding define the differential role of fenretinide and all-trans RA in regulating the death and survival of human hepatocellular carcinoma Huh7 cells.

Jianwen Fang, Yaping Fang, Hui-Xin Liu, 2013, Biochemical pharmacology.

Comparative kinetics of cofactor association and dissociation for the human and trypanosomal S-adenosylhomocysteine hydrolases. 3. Role of lysyl and tyrosyl residues of the C-terminal extension.

K. Kuczera, R. Borchardt, R. Schowen, 2010, Biochemistry.

Mining of MicroRNA Expression Data - A Rough Set Approach

Jerzy W. Grzymala-Busse, Jianwen Fang, J. Grzymala-Busse, 2006, RSKT.

Genome-Wide Binding and Transcriptome Analysis of Human Farnesoid X Receptor in Primary Human Hepatocytes

Yaping Fang, Jianwen Fang, G. Guo, 2014, PloS one.

Hepatocyte Nuclear Factor 4 Alpha and Farnesoid X Receptor Co-regulates Gene Transcription in Mouse Livers on a Genome-Wide Scale

Ann M. Thomas, Yaping Fang, Jianwen Fang, 2013, Pharmaceutical Research.

Genome‐wide tissue‐specific farnesoid X receptor binding in mouse liver and intestine

Ann M. Thomas, Jianwen Fang, G. Guo, 2010, Hepatology.

Combining Gene Expression and Interactions Data with miRNA Family Information for Identifying miRNA-mRNA Regulatory Modules

Shu-Lin Wang, Jianwen Fang, Dan Luo, 2017, ICIC.

Progesterone initiates Wnt-beta-catenin signaling but estradiol is required for nuclear activation and synchronous proliferation of rat uterine stromal cells.

K. Imakawa, Jianwen Fang, V. Rider, 2006, The Journal of endocrinology.

Classifying Aging Genes into DNA Repair or Non-DNA Repair-Related Categories

Jianwen Fang, Xinkun Wang, Yaping Fang, 2013, ICIC.

The NCI Transcriptional Pharmacodynamics Workbench: A Tool to Examine Dynamic Expression Profiling of Therapeutic Response in the NCI-60 Cell Line Panel.

Dmitriy Sonkin, Yingdong Zhao, Jianwen Fang, 2018, Cancer research.

MIMPFC: Identifying miRNA-mRNA regulatory modules by combining phase-only correlation and improved rough-fuzzy clustering

Dan Luo, Shu-Lin Wang, Jianwen Fang, 2017, J. Bioinform. Comput. Biol..

GSMC: Combining Parallel Gibbs Sampling with Maximal Cliques for Hunting DNA Motif

Shu-Lin Wang, Jianwen Fang, Wei Zhang, 2017, J. Comput. Biol..

Discrimination of soluble and aggregation-prone proteins based on sequence information.

Jianwen Fang, Yaping Fang, Yaping Fang, 2013, Molecular bioSystems.

A novel scoring function for discriminating hyperthermophilic and mesophilic proteins with application to predicting relative thermostability of protein mutants

Jianwen Fang, Yunqi Li, C. Russell Middaugh, 2010, BMC Bioinformatics.

Novel regulators of Fgf23 expression and mineralization in Hyp bone.

Zhousheng Xiao, Jianwen Fang, Jinyu Ren, 2009, Molecular endocrinology.

Filling and mining the reactive metabolite target protein database.

Jianwen Fang, R. Hanzlik, Y. Koen, 2009, Chemico-biological interactions.

DB-PABP: a database of polyanion-binding proteins

Jianwen Fang, C. Russell Middaugh, Yinghua Dong, 2007, Nucleic Acids Res..

Tightly integrated genomic and epigenomic data mining using tensor decomposition

Jianwen Fang, Jianwen Fang, 2018, Bioinform..

A critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation

Jianwen Fang, Jianwen Fang, 2019, Briefings Bioinform..

Exposure time versus cytotoxicity for anticancer agents

David M. Evans, L. Rubinstein, J. Doroshow, 2019, Cancer Chemotherapy and Pharmacology.

Molecular dynamics simulations of domain motions of substrate‐free S‐adenosyl‐ L‐homocysteine hydrolase in solution

K. Kuczera, R. Borchardt, R. Schowen, 2008, Proteins.

Age-associated changes in synaptic lipid raft proteins revealed by two-dimensional fluorescence difference gel electrophoresis

M. Michaelis, Jianwen Fang, N. Galeva, 2010, Neurobiology of Aging.

Sequence-based source tracking of Escherichia coli based on genetic diversity of beta-glucuronidase.

Jianwen Fang, Jeffrey L Ram, Raquel P. Ritchie, 2004, Journal of environmental quality.

The role of retinoic acid in hepatic lipid homeostasis defined by genomic binding and transcriptome profiling

Q. Zhan, Yaping Fang, Jianwen Fang, 2013, BMC Genomics.

Function Annotation of Hepatic Retinoid x Receptor α Based on Genome-Wide DNA Binding and Transcriptome Profiling

Q. Zhan, Yaping Fang, Jianwen Fang, 2012, PloS one.

Diagnostic prediction of complex diseases using phase-only correlation based on virtual sample template

Shu-lin Wang, Yaping Fang, Jianwen Fang, 2013, BMC Bioinformatics.

Transcription Activation by the DNA-Binding Domain of the AraC Family Protein RhaS in the Absence of Its Effector-Binding Domain

Jianwen Fang, Jianwen Fang, D. Jin, 2007, Journal of bacteriology.

PPARβ Regulates Liver Regeneration by Modulating Akt and E2f Signaling

Yaping Fang, Jianwen Fang, F. Gonzalez, 2013, PloS one.

Structure of apolipoprotein A-I in spherical high density lipoproteins of different sizes

Jianwen Fang, K. Rye, G. Ren, 2008, Proceedings of the National Academy of Sciences.

Using multitask classification methods to investigate the kinase-specific phosphorylation sites

Shuo Xu, Jianwen Fang, Yaping Fang, 2012, Proteome Science.

Predicting Kinase-specific Phosphorylation Sites Using a Multitask Classification Framework

Shan Gao, Jianwen Fang, Jianwen Fang, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine.

The major vault protein is related to the toxic anion resistance protein (TelA) family

K. Suprenant, Jianwen Fang, G. Lushington, 2007, Journal of Experimental Biology.

Identification of properties important to protein aggregation using feature selection

Shan Gao, David Tai, Jianwen Fang, 2013, BMC Bioinformatics.

Evaluation of mutual information, genetic algorithm and SVR for feature selection in QSAR regression.

David Tai, Jianwen Fang, Jianwen Fang, 2011, Current drug discovery technologies.

Combining mRNA, microRNA, Protein Expression Data and Driver Genes Information for Identifying Cancer-Related MicroRNAs

Shu-Lin Wang, Jiawei Lei, Jianwen Fang, 2018, ICIC.

Spectral clustering of high-dimensional data via Nonnegative Matrix Factorization

Fang Chen, Shulin Wang, Jianwen Fang, 2015, 2015 International Joint Conference on Neural Networks (IJCNN).

Prognostic Value and Clinicopathological Features of MicroRNA-206 in Various Cancers: A Meta-Analysis

Jianwen Fang, Y. Shao, Z. Guo, 2020, BioMed research international.

Support Vector Machines in HTS Data Mining: Type I MetAPs Inhibition Study

Jianwen Fang, Yinghua Dong, Gunda I Georg, 2006, Journal of biomolecular screening.

Identification of properties important to protein aggregation using feature selection

Yaping Fang, Jianwen Fang, David Tai, 2013, BMC Bioinformatics.

Hepatocyte Nuclear Factor 4 Alpha and Farnesoid X Receptor Co-regulates Gene Transcription in Mouse Livers on a Genome-Wide Scale

Ann M. Thomas, S. Hart, Yaping Fang, 2013, Pharmaceutical Research.

Predicting residue-residue contacts using random forest models

Jianwen Fang, Yunqi Li, Yaping Fang, 2011, Bioinform..

NURBS: a database of experimental and predicted nuclear receptor binding sites of mouse

Ning Zhang, Jianwen Fang, Yaping Fang, 2013, Bioinform..

The reactive metabolite target protein database (TPDB) – a web-accessible resource

Jianwen Fang, R. Hanzlik, Y. Koen, 2007, BMC Bioinformatics.

Large-scale Protein-Protein Interaction prediction using novel kernel methods

Jianwen Fang, Xue-wen Chen, Ryan J. Haasl, 2008, Int. J. Data Min. Bioinform..

Cancer classification using collaborative representation classifier based on non-convex lp-norm and novel decision rule

Fang Chen, Shulin Wang, Jianwen Fang, 2015, 2015 Seventh International Conference on Advanced Computational Intelligence (ICACI).

Distance-dependent statistical potentials for discriminating thermophilic and mesophilic proteins.

Jianwen Fang, Yunqi Li, Jianwen Fang, 2010, Biochemical and biophysical research communications.

Tracker: continuous HMMER and BLAST searching

Jianwen Fang, Paul T. Kelly, Madelaine Marchin, 2005, Bioinform..

The reactive metabolite target protein database (TPDB) – a web-accessible resource

Jianwen Fang, Yinghua Dong, Bhargav Theertham, 2007, BMC Bioinformatics.

Molecular cancer classification using a meta-sample-based regularized robust coding method

Shu-Lin Wang, Liuchao Sun, Jianwen Fang, 2014, BMC Bioinformatics.

Exome sequencing reveals a thrombopoietin ligand mutation in a Micronesian family with autosomal recessive aplastic anemia.

I. Saadi, Jianwen Fang, R. Calado, 2013, Blood.

Using multitask classification methods to investigate the kinase-specific phosphorylation sites

Yaping Fang, Jianwen Fang, Shuo Xu, 2012, Proteome Science.

A Three-dimensional Homology Model of Lipid-free Apolipoprotein A-IV Using Cross-linking and Mass Spectrometry*

Jianwen Fang, P. Tso, Matthew R Tubb, 2008, Journal of Biological Chemistry.

Diagnostic prediction of complex diseases using phase-only correlation based on virtual sample template

Shu-Lin Wang, Jianwen Fang, Yaping Fang, 2013, BMC Bioinformatics.

Feature Selection in Validating Mass Spectrometry Database Search Results

Jianwen Fang, G. Lushington, T. Williams, 2008, J. Bioinform. Comput. Biol..

Mining Mass Spectrometry Database Search Results - A Rough Set Approach

Jerzy W. Grzymala-Busse, Jianwen Fang, J. Grzymala-Busse, 2007, RSEISP.

Comparative kinetics of cofactor association and dissociation for the human and trypanosomal S-adenosylhomocysteine hydrolases. 1. Basic features of the association and dissociation processes.

K. Kuczera, R. Borchardt, R. Schowen, 2007, Biochemistry.

Predicting Penetration Across the Blood-Brain Barrier A Rough Set Approach

Jerzy W. Grzymala-Busse, Jianwen Fang, J. Grzymala-Busse, 2007, 2007 IEEE International Conference on Granular Computing (GRC 2007).