D. Ikeda

发表

Taxonomic profiles in metagenomic analyses of free-living microbial communities in the Ofunato Bay.

Md. Shaheed Reza, V. Bajic, T. Gojobori, 2018, Gene.

NIRF/UHRF2 occupies a central position in the cell cycle network and allows coupling with the epigenetic landscape

D. Ikeda, Tsutomu Mori, Y. Yamaguchi, 2012, FEBS letters.

NIRF constitutes a nodal point in the cell cycle network and is a candidate tumor suppressor

D. Ikeda, T. Fukushima, S. Takenoshita, 2011, Cell cycle.

Myosin heavy chain genes expressed in juvenile and adult silver carp Hypopthalmichthys molitrix: novel fast-type myosin heavy chain genes of silver carp.

S. Watabe, D. Ikeda, Y. Tao, 2009, Gene.

Lampreys Have a Single Gene Cluster for the Fast Skeletal Myosin Heavy Chain Gene Family

S. Watabe, D. Ikeda, Y. Ono, 2013, PloS one.

Early development of medaka Oryzias latipes muscles as revealed by transgenic approaches using embryonic and larval types of myosin heavy chain genes

S. Watabe, D. Ikeda, S. Kinoshita, 2010, Developmental dynamics : an official publication of the American Association of Anatomists.

Host gut-derived probiotic bacteria promote hypertrophic muscle progression and upregulate growth-related gene expression of slow-growing Malaysian mahseer Tor tambroides.

Asaduzzaman, D. Ikeda, A. Abol-Munafi, 2018 .

Cellular muscle growth and molecular cloning and expression of growth-related gene of Malaysian Mahseer Tor tambroides larvae fed with live and formulated feeds in indoor nursery rearing system.

D. Ikeda, M. Asaduzzaman, A. Abol-Munafi, 2017 .

Dietary supplementation of inosine monophosphate promotes cellular growth of muscle and upregulates growth-related gene expression in Nile tilapia Oreochromis niloticus

Md. Eaqub Ali, S. Watabe, D. Ikeda, 2017 .

Changes in the activities and gene expressions of poly(ADP-ribose) glycohydrolases during the differentiation of human promyelocytic leukemia cell line HL-60.

D. Ikeda, F. Uchiumi, S. Tanuma, 2004, Biochimica et biophysica acta.

Seasonal changes in the communities of photosynthetic picoeukaryotes in Ofunato Bay as revealed by shotgun metagenomic sequencing.

Md. Shaheed Reza, V. Bajic, T. Gojobori, 2018, Gene.

Color change of proteorhodopsin by a single amino acid replacement at a distant cytoplasmic loop.

D. Ikeda, H. Kandori, Mikihiro Shibata, 2008, Angewandte Chemie.

Sodium alginate supplementation modulates gut microbiota, health parameters, growth performance and growth‐related gene expression in Malaysian Mahseer Tor tambroides

D. Ikeda, M. Asaduzzaman, S. Kinoshita, 2019, Aquaculture Nutrition.

Rapid detection of the fish-pathogenic bacterium Pasteurella piscicida by polymerase chain reaction targetting nucleotide sequences of the species-specific plasmid pZP1.

D. Ikeda, I. Hirono, T. Aoki, 1997 .

Changes in free amino acid concentrations and associated gene expression profiles in the abdominal muscle of kuruma shrimp (Marsupenaeus japonicus) acclimated at different salinities

S. Watabe, S. Asakawa, D. Ikeda, 2018, Journal of Experimental Biology.

Changes in free amino acid concentrations and associated gene expression profiles in the abdominal muscle of kuruma shrimp Marsupenaeus japonicus reared at different salinity

S. Watabe, S. Asakawa, D. Ikeda, 2017, bioRxiv.

The occurrence of tissue-specific twitchin isoforms in the mussel Mytilus galloprovincialis

D. Funabara, D. Hartshorne, S. Watabe, 2008, Fisheries Science.

Interleukin-17A/F1 Deficiency Reduces Antimicrobial Gene Expression and Contributes to Microbiome Alterations in Intestines of Japanese medaka (Oryzias latipes)

S. Watabe, Y. Saeki, D. Ikeda, 2020, Frontiers in Immunology.

An alpha-1-acid glycoprotein-like protein as a major component of the ovarian cavity fluid of viviparous fish, Neoditrema ransonnetii (Perciformes, Embiotocidae).

D. Ikeda, S. Tsutsui, O. Nakamura, 2009, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.

Myocyte enhancer factor 2 regulates expression of medaka Oryzias latipes fast skeletal myosin heavy chain genes in a temperature-dependent manner.

Takashi Sasaki, N. Shimizu, S. Watabe, 2008, Gene.

Global gene expression analysis of the muscle tissues of medaka acclimated to low and high environmental temperatures.

S. Watabe, S. Asakawa, D. Ikeda, 2017, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

cDNA cloning and complete primary structures of myosin heavy chains from brushtooth lizardfish Saurida undosquamis and wanieso lizardfish S. wanieso fast skeletal muscles

S. Watabe, D. Ikeda, H. Fukushima, 2008, Fisheries Science.

Metagenome-based diversity analyses suggest a strong locality signal for bacterial communities associated with oyster aquaculture farms in Ofunato Bay.

Md. Shaheed Reza, V. Bajic, T. Gojobori, 2018, Gene.

Seasonal changes in the abundance of bacterial genes related to dimethylsulfoniopropionate catabolism in seawater from Ofunato Bay revealed by metagenomic analysis.

Md. Shaheed Reza, V. Bajic, T. Gojobori, 2018, Gene.

Molecular Mechanisms Involved in Thermally Induced Gel Formation of Japanese Codling Meat Paste during a Two-Step Heating Procedure

S. Watabe, D. Ikeda, Nanami Mizusawa, 2022, ACS Food Science & Technology.

Suitability of Japanese codling as a raw material for surimi-based products revealed by primary sequence analysis of myosin heavy chain and thermal gel properties

S. Watabe, D. Ikeda, Nanami Mizusawa, 2020, Fisheries Science.

Three embryonic myosin heavy chain genes encoding different motor domain structures from common carp show distinct expression patterns in cranial muscles.

S. Watabe, D. Ikeda, Y. Nihei, 2010, Marine genomics.

A 5'-flanking region of embryonic-type myosin heavy chain gene, MYH(M)₇₄₃₋₂, from torafugu Takifugu rubripes regulates developmental muscle-specific expression.

S. Watabe, D. Ikeda, L. Yasmin, 2011, Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics.

Metagenomic analysis using 16S ribosomal RNA genes of a bacterial community in an urban stream, the Tama River, Tokyo

Md. Shaheed Reza, K. Ikeo, S. Watabe, 2018, Fisheries Science.

Fibre type-specific expression patterns of myosin heavy chain genes in adult torafugu Takifugu rubripes muscles

S. Watabe, D. Ikeda, L. Yasmin, 2010, Journal of Experimental Biology.

Molecular cloning and mRNA expression analysis of carp embryonic, slow and cardiac myosin heavy chain isoforms

Yosuke Ono, Satoshi Ohara, Shugo Watabe, 2006, Journal of Experimental Biology.

Diversity of the pufferfish Takifugu rubripes fast skeletal myosin heavy chain genes.

S. Watabe, D. Ikeda, 2006, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

Primary structures and gene organizations of two types of Wap65 from the pufferfish Takifugu rubripes

D. Ikeda, T. Otaka, T. Mitsuboshi, 2003, Fish Physiology and Biochemistry.

Divergent evolution of the myosin heavy chain gene family in fish and tetrapods: evidence from comparative genomic analysis.

G. Elgar, Y. Edwards, S. Watabe, 2007, Physiological genomics.

The complete genomic sequence of the carp fast skeletal myosin heavy chain gene.

S. Watabe, D. Ikeda, K. Kikuchi, 2005, Gene.

Diversity and functions of bacterial communities in water and sediment from the watershed of the Tama River flowing a highly urbanized area

Md. Shaheed Reza, K. Ikeo, S. Watabe, 2021, Fisheries Science.

Basin-scale seasonal changes in marine free-living bacterioplankton community in the Ofunato Bay.

Md. Shaheed Reza, V. Bajic, T. Gojobori, 2018, Gene.

cDNA cloning of myosin heavy chain genes from medaka Oryzias latipes embryos and larvae and their expression patterns during development

S. Watabe, D. Ikeda, Y. Ono, 2006, Developmental dynamics : an official publication of the American Association of Anatomists.

Identification of novel tropomyosin 1 genes of pufferfish (Fugu rubripes) on genomic sequences and tissue distribution of their transcripts

S. Minoshima, N. Shimizu, S. Watabe, 2003, Molecular Biology Reports.

A novel phosphorylated glycoprotein in the shell matrix of the oyster Crassostrea nippona

D. Ikeda, T. Samata, Hideyoshi Sato, 2008, The FEBS journal.

Strongly hydrogen-bonded water molecule is observed only in the alkaline form of proteorhodopsin

D. Ikeda, H. Kandori, Mikihiro Shibata, 2006 .

FTIR study of the retinal Schiff base and internal water molecules of proteorhodopsin.

D. Ikeda, H. Kandori, Y. Furutani, 2007, Biochemistry.

Saccharide-branched Cyclodextrins as Targeting Drug Carriers

D. Ikeda, M. Mizuno, K. Hattori, 2006 .

Suitability of Japanese codling as a raw material for surimi-based products revealed by primary sequence analysis of myosin heavy chain and thermal gel properties

S. Watabe, D. Ikeda, Nanami Mizusawa, 2020, Fisheries Science.

Genomic structural analysis of the pufferfish (Takifugu rubripes) skeletal myosin heavy chain genes

D. Ikeda, 2004 .

Metagenomic Methods: From Seawater to the Database

Md. Shaheed Reza, V. Bajic, T. Gojobori, 2019, Marine Metagenomics.

Seasonal and annual changes in the microbial communities of Ofunato Bay, Japan, based on metagenomics

Md. Shaheed Reza, T. Gojobori, K. Ikeo, 2021, Scientific Reports.

Multiple gene organization of pufferfish Fugu rubripes tropomyosin isoforms and tissue distribution of their transcripts.

S. Minoshima, N. Shimizu, S. Watabe, 2004, Gene.

Fabrication of core-shell structured nanoparticle layer substrate for excitation of localized surface plasmon resonance and its optical response for DNA in aqueous conditions.

D. Ikeda, Y. Yanagida, T. Endo, 2010, Analytica chimica acta.

Marine Metagenomic Sequence Counts of Reads Assigned to Taxa Consistently Proportionate to Read Counts Obtained for per g of Seawater Sample

Md. Shaheed Reza, V. Bajic, T. Gojobori, 2019, Marine Metagenomics.

Changes in free amino acid concentrations and associated gene expression profiles in the abdominal muscle of kuruma shrimp Marsupenaeus japonicus reared at different salinity

S. Watabe, S. Asakawa, D. Ikeda, 2017, bioRxiv.

Isolation of microsatellite markers by in silico screening implicated for genetic linkage mapping in Japanese pufferfish Takifugu rubripes

S. Watabe, M. Nishida, D. Ikeda, 2004 .

NIRF constitutes a nodal point in the cell cycle network and is a candidate tumor suppressor

D. Ikeda, T. Fukushima, S. Takenoshita, 2011, Cell cycle.

Basin-scale seasonal changes in marine free-living bacterioplankton community in the Ofunato Bay.

Md. Shaheed Reza, V. Bajic, T. Gojobori, 2018, Gene.