Neva C. Durand

发表

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom.

James T. Robinson, Jill P. Mesirov, Eric S. Lander, 2016, Cell systems.

Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data

Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov, 2017, bioRxiv.

Juicebox.js provides a cloud-based visualization system for Hi-C data

Jill P. Mesirov, Douglass Turner, Neva C. Durand, 2017 .

Genetic determinants of co-accessible chromatin regions in activated T cells across humans

Howard Y. Chang, Neva C. Durand, Erez Lieberman Aiden, 2018, Nature Genetics.

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

Neva C. Durand, Erez Lieberman Aiden, E. Lander, 2014, Cell.

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

Steven P. Callahan, Jocelyn Y. Kishi, Neva C. Durand, 2018, bioRxiv.

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

Neva C. Durand, Erez Lieberman Aiden, E. Lander, 2016, Science.

Activity-by-Contact model of enhancer-promoter regulation from thousands of CRISPR perturbations

Neva C. Durand, Erez Lieberman Aiden, Sharon R Grossman, 2019, Nature Genetics.

The Energetics and Physiological Impact of Cohesin Extrusion

Neva C. Durand, Erez Lieberman Aiden, Michele Di Pierro, 2018, Cell.

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

Neva C. Durand, Erez Lieberman Aiden, A. Gnirke, 2015, Proceedings of the National Academy of Sciences.

Genetic determinants of co-accessible chromatin regions in T cell activation across humans

Aviv Regev, Howard Y. Chang, Philip L. De Jager, 2016, bioRxiv.

Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture

Neva C. Durand, Erez Lieberman Aiden, E. Lander, 2016, Proceedings of the National Academy of Sciences.

The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000

Sanjit S. Batra, Neva C. Durand, Muhammad S. Shamim, 2018, bioRxiv.

Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations

Jesse M. Engreitz, Eric S. Lander, Neva C. Durand, 2019, bioRxiv.

Genetic determinants of chromatin accessibility and gene regulation in T cell activation across human individuals

Aviv Regev, Howard Y. Chang, Neva C. Durand, 2016 .

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

Eric S. Lander, Neva C. Durand, Ido Machol, 2015, Cell.

Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus)

Neva C. Durand, Erez Lieberman Aiden, Susan J. Brown, 2017, BMC Biology.

The Hi-Culfite assay reveals relationships between chromatin contacts and DNA methylation state

Neva C. Durand, A. Gnirke, E. Lander, 2018, bioRxiv.

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

Steven P. Callahan, Jocelyn Y. Kishi, Neva C. Durand, 2018, bioRxiv.

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments.

Neva C. Durand, Ido Machol, Erez Lieberman Aiden, 2016, Cell systems.

Genetic determinants of co-accessible chromatin regions in activated T cells across humans

Howard Y. Chang, Neva C. Durand, Chun Jimmie Ye, 2018, Nature Genetics.

The Energetics and Physiological Impact of Cohesin Extrusion

Neva C. Durand, Erez Lieberman Aiden, Michele Di Pierro, 2018, Cell.

Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum

Neva C. Durand, Erez Lieberman Aiden, E. Aiden, 2018, bioRxiv.

Chromatin architecture transitions from zebrafish sperm through early embryogenesis

Juan M. Vaquerizas, Neva C. Durand, B. Cairns, 2021, Genome research.

CTCF looping is established during gastrulation in medaka embryos

Neva C. Durand, S. Morishita, H. Takeda, 2018, bioRxiv.

A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing

Neva C. Durand, Erez Lieberman Aiden, A. Gnirke, 2020, bioRxiv.

Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement

Neva C. Durand, J. Bennetzen, H. Nguyen, 2021, Journal of advanced research.

The ENCODE Uniform Analysis Pipelines

Daniel S. Kim, Brian T. Lee, Neva C. Durand, 2023, bioRxiv.

Single-cell multi-scale footprinting reveals the modular organization of DNA regulatory elements

Neva C. Durand, Max A. Horlbeck, Fabiana M. Duarte, 2023, bioRxiv.

Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample

Neva C. Durand, Erez Lieberman Aiden, Brendan L. O’Connell, 2023, bioRxiv.

The ENCODE Uniform Analysis Pipelines

Daniel S. Kim, Brian T. Lee, Neva C. Durand, 2023, Research square.

Tool Juicebox Provides a Visua lization System for HiC Contact Maps with Unlimited Zoom Graphical

Neva C. Durand, J. Mesirov, E. Lander, 2022 .

The ENCODE Uniform Analysis Pipelines

Daniel S. Kim, Brian T. Lee, Neva C. Durand, 2023, Research square.

An encyclopedia of enhancer-gene regulatory interactions in the human genome

Neva C. Durand, Erez Lieberman Aiden, David R. Kelley, 2023, bioRxiv.