Vasco Azevedo

发表

AutoAssemblyD: a graphical user interface system for several genome assemblers

Adonney Allan de Oliveira Veras, Pablo Henrique Caracciolo Gomes de Sá, Vasco Azevedo, 2013, Bioinformation.

CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands

Andreas Tauch, Vasco Azevedo, Richard Röttger, 2011, Nucleic Acids Res..

KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa

Andreas Tauch, Vasco Azevedo, Glaura C. Franco, 2012, Nucleic Acids Res..

Computational Techniques in Data Integration and Big Data Handling in Omics

Debmalya Barh, Vasco Azevedo, Rommel Thiago Jucá Ramos, 2018 .

KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape

Alexander Junge, Vasco Azevedo, Anne Christensen, 2014, BMC Systems Biology.

Protein-Protein Interactions: An Overview

Debmalya Barh, Vasco Azevedo, Syed Babar Jamal, 2019, Encyclopedia of Bioinformatics and Computational Biology.

Pan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes

Vasco Azevedo, Rommel Ramos, Allan Veras, 2018, Scientific Reports.

On the limits of computational functional genomics for bacterial lifestyle prediction

Anne-Christin Hauschild, Vasco Azevedo, Richard Röttger, 2014, GCB.

Determining influential miRNA targets in diseases using influence diffusion model

Preetam Ghosh, Debmalya Barh, Vasco Azevedo, 2015, BCB.

Analysis of quality raw data of second generation sequencers with Quality Assessment Software

Jan Baumbach, Vasco Azevedo, Artur Silva, 2011, BMC Research Notes.

miRsig: a consensus-based network inference methodology to identify pan-cancer miRNA-miRNA interaction signatures

Debmalya Barh, Vasco Azevedo, Preetam Ghosh, 2017, Scientific Reports.

LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis

Anne-Christin Hauschild, Sebastian Böcker, Vasco Azevedo, 2017, J. Integr. Bioinform..

PetriScape - A plugin for discrete Petri net simulations in Cytoscape

Vasco Azevedo, Diogo Almeida, Jan Baumbach, 2016, J. Integr. Bioinform..

Genomic Islands: an overview of current software and future improvements

Vasco Azevedo, Siomar de Castro Soares, Letícia de Castro Oliveira, 2016, J. Integr. Bioinform..

Simplifier: a web tool to eliminate redundant NGS contigs

Debmalya Barh, Vasco Azevedo, Artur Silva, 2012, Bioinformation.

A Scheduling Algorithm for Computational Grids that Minimizes Centralized Processing in Genome Assembly of Next-Generation Sequencing Data

Vasco Azevedo, Antônio Jorge Gomes Abelém, Artur Silva, 2012, Front. Gene..

Graphical contig analyzer for all sequencing platforms (G4ALL): a new stand-alone tool for finishing and draft generation of bacterial genomes

Debmalya Barh, Vasco Azevedo, Artur Silva, 2013, Bioinformation.

The impact of the quality filter for RNA-Seq data over differential expression profile

Adonney Allan de Oliveira Veras, Vasco Azevedo, Rommel Ramos, 2014, IWBBIO.

Density parameter estimation for finding clusters of homologous proteins - tracing actinobacterial pathogenicity lifestyles

Peng Sun, Vasco Azevedo, Richard Röttger, 2013, Bioinform..

Chapter 21 In Silico Models From Simple Networks to Complex Diseases

Debmalya Barh, Emmanuel Oluwatobi Salawu, Vasco Azevedo, 2014, Animal Biotechnology.

Expert Panel Discusses the Importance of Systems Medicine

Jan Baumbach, Joseph Loscalzo, Vasco Azevedo, 2018, Systems Medicine.

In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks

Preetam Ghosh, M. Michael Gromiha, Debmalya Barh, 2016, BMC Systems Biology.

In Silico Protein-Protein Interactions: Avoiding Data and Method Biases Over Sensitivity and Specificity.

Debmalya Barh, Rafaela Salgado Ferreira, Vasco Azevedo, 2015, Current protein & peptide science.

SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology

Preetam Ghosh, Debmalya Barh, Vasco Azevedo, 2016, BMC Bioinformatics.

Next-Generation Sequencing and Data Analysis: Strategies, Tools, Pipelines and Protocols

Debmalya Barh, Vasco Azevedo, Adonney A. O. Veras, 2018 .

Structure modeling of a metalloendopeptidase from Corynebacterium pseudotuberculosis

Cláudio Nahum Alves, Vasco Azevedo, Jerônimo Lameira, 2012, Comput. Biol. Medicine.

Elucidation of epithelial-mesenchymal transition-related pathways in a triple-negative breast cancer cell line model by multi-omics interactome analysis.

Jan Baumbach, Vasco Azevedo, Josch K Pauling, 2014, Integrative biology : quantitative biosciences from nano to macro.

DNA Vaccine Using Mycobacterium bovis Ag85B Antigen Induces Partial Protection against Experimental Infection in BALB/c Mice

Vasco Azevedo, V. Azevedo, S. Oliveira, 2006, Clinical and Vaccine Immunology.

The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability

Ana Tereza Ribeiro de Vasconcelos, Vasco Azevedo, Andrea Queiroz Maranhão, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Virus-Host Coevolution: Common Patterns of Nucleotide Motif Usage in Flaviviridae and Their Hosts

Andreas Tauch, Vasco Azevedo, Francisco P. Lobo, 2009, PloS one.

The Pan-Genome of the Animal Pathogen Corynebacterium pseudotuberculosis Reveals Differences in Genome Plasticity between the Biovar ovis and equi Strains

Andreas Tauch, Amjad Ali, Vasco Azevedo, 2013, PloS one.

Implications of the human microbiome in inflammatory bowel diseases.

Amjad Ali, Vasco Azevedo, Anderson Miyoshi, 2013, FEMS microbiology letters.

Complete Genome Sequence of Corynebacterium pseudotuberculosis I19, a Strain Isolated from a Cow in Israel with Bovine Mastitis

Andreas Tauch, Amjad Ali, Vasco Azevedo, 2010, Journal of bacteriology.

Diversity of lactic acid bacteria of the bioethanol process

Vasco Azevedo, Anderson Miyoshi, Marcos Antonio de Morais, 2010, BMC Microbiology.

Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses

Pablo Henrique Caracciolo Gomes de Sá, Vasco Azevedo, Anderson Miyoshi, 2014, BMC Genomics.

GIPSy: Genomic island prediction software.

Andreas Tauch, Jan Baumbach, Vasco Azevedo, 2016, Journal of biotechnology.

A Novel Comparative Genomics Analysis for Common Drug and Vaccine Targets in Corynebacterium pseudotuberculosis and other CMN Group of Human Pathogens

Amjad Ali, Debmalya Barh, Vasco Azevedo, 2011, Chemical biology & drug design.

A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes

Ann Nowé, Kristof Theys, Anne-Mieke Vandamme, 2019, PLoS neglected tropical diseases.

Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production.

Andreas Tauch, Amjad Ali, Vasco Azevedo, 2013, Journal of biotechnology.

Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in Two Corynebacterium pseudotuberculosis Strains

Andreas Tauch, Amjad Ali, Jan Baumbach, 2011, PloS one.