Dongqing Wei

发表

A Two-Fold Structural Classification Method for Determining the Accurate Ensemble of Protein Structures

Zuyue Fu, S. Qian, Loukas Petridis, 2019, Communications in Computational Physics.

Determining the accurate ensemble of protein atomic structures by combining small angle scattering with molecular simulations based on a two-fold scheme for structural classification

Zuyue Fu, S. Qian, Loukas Petridis, 2017 .

Recent progress on structural bioinformatics research of cytochrome P450 and its impact on drug discovery.

Tao Zhang, Dongqing Wei, 2015, Advances in experimental medicine and biology.

Bioinformatics tools for discovery and functional analysis of single nucleotide polymorphisms.

Li Li, Dongqing Wei, Dongqing Wei, 2015, Advances in experimental medicine and biology.

Drug inhibition and proton conduction mechanisms of the influenza a M2 proton channel.

Dongqing Wei, L. Liu, Ruoxu Gu, 2015, Advances in experimental medicine and biology.

Human cytochrome P450 and personalized medicine.

Dongqing Wei, Qi Chen, 2015, Advances in experimental medicine and biology.

Prediction of Protein Solubility Based on Sequence Feature Fusion and DDcCNN

Dongqing Wei, A. Kaushik, Xianfang Wang, 2021, Interdisciplinary Sciences: Computational Life Sciences.

Stoichioproteomics reveal oxygen usage bias, key proteins and pathways in glioma

Bo Li, Yu-Juan Zhang, M. T. Khan, 2019, BMC Medical Genomics.

Identification of chlorprothixene as a potential drug that induces apoptosis and autophagic cell death in acute myeloid leukemia cells

Dongqing Wei, A. Kaushik, M. Junaid, 2020, The FEBS journal.

Genetic insight of the H5N1 hemagglutinin cleavage site

Yixue Li, Yisheng Zhu, Dongqing Wei, 2007, Chinese science bulletin = Kexue tongbao.

Structural Bioinformatics and Computer Aided Design of Novel Drugs and Functional Proteins

Dongqing Wei, Lin Li, 2022 .

Discovery of a Natural Product with Potent Efficacy Against SARS-CoV-2 by Drug Screening

Dongqing Wei, Jinghong Zhao, A. Mehmood, 2021, Interdisciplinary sciences, computational life sciences.

A novel drug candidate for Alzheimer's disease treatment: gx-50 derived from Zanthoxylum bungeanum.

Zhao-xia Wang, Ying Zhou, Lianyun Wang, 2013, Journal of Alzheimer's disease : JAD.

A Self-attention Graph Convolutional Network for Precision Multi-tumour Early Diagnostics with DNA Methylation Data

Dongqing Wei, A. Mehmood, Y. Xiong, 2022, bioRxiv.

Exploring the Molecular Basis of Substrate and Product Selectivities of Nocardicin Bifunctional Thioesterase

L. Bai, Dongqing Wei, Ting Shi, 2021, Interdisciplinary Sciences: Computational Life Sciences.

Ultra-Large-Scale Screening of Natural Compounds and Free Energy Calculations Revealed Potential Inhibitors for the Receptor-Binding Domain (RBD) of SARS-CoV-2

Syed Shujait Ali, Dongqing Wei, M. Munir, 2022, Molecules.

DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method

Yanjing Wang, Yi Xiong, Dong-Qing Wei, 2020, Briefings Bioinform..

The computational model to predict accurately inhibitory activity for inhibitors towardsCYP3A4

Tao Zhang, Kuo-Chen Chou, Zhiyuan Xie, 2010, Comput. Biol. Medicine.

Diketopiperazine Modulates Arabidopsis Thaliana Root System Architecture by Promoting Interactions of Auxin Receptor TIR1 and IAA7/17 Proteins.

Dongqing Wei, Xiaodong Chen, Ai-Qun Jia, 2021, Plant & cell physiology.

Selection of molecular descriptors with artificial intelligence for the understanding of HIV-1 protease peptidomimetic inhibitors-activity.

Kuo-Chen Chou, Dongqing Wei, K. Chou, 2005, Medicinal chemistry (Shariqah (United Arab Emirates)).

DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features

Yi Xiong, Dong-Qing Wei, Wei Wang, 2019, Briefings Bioinform..

Dipeptide Frequency of Word Frequency and Graph Convolutional Networks for DTA Prediction

Xianfang Wang, Peng Gao, Fan Lu, 2020, Frontiers in Bioengineering and Biotechnology.

Identification of novel drug targets for diamond-blackfan anemia based on RPS19 gene mutation using protein-protein interaction network

Muhammad Junaid, Aman Chandra Kaushik, Chang Liu, 2018, BMC Syst. Biol..

The α7 nAChR selective agonists as drug candidates for Alzheimer's disease.

Dongqing Wei, Ruoxu Gu, Huaimeng Fan, 2015, Advances in experimental medicine and biology.

MMV-db: vaccinomics and RNA-based therapeutics database for infectious hemorrhagic fever-causing mammarenaviruses

Abbas Khan, Dongqing Wei, Taimoor Khan, 2021, Database J. Biol. Databases Curation.

CYP-nsSNP: A specialized database focused on effect of non-synonymous SNPs on function of CYPs

Tao Zhang, Dongqing Wei, L. Liu, 2012, Interdisciplinary Sciences: Computational Life Sciences.

Running ahead of evolution—AI-based simulation for predicting future high-risk SARS-CoV-2 variants

Jie Fu, Dongqing Wei, Qiankun Wang, 2023, bioRxiv.

Irinotecan and vandetanib create synergies for treatment of pancreatic cancer patients with concomitant TP53 and KRAS mutations

Dongqing Wei, Xiangeng Wang, Aman Chandra Kaushik, 2020, Briefings Bioinform..

More or less deadly? A mathematical model that predicts SARS-CoV-2 evolutionary direction

J. Demongeot, Dongqing Wei, Zhaobin Xu, 2022, bioRxiv.

Molecular Dynamics Studies on T1 Lipase: Insight into a Double-Flap Mechanism

Ying Wang, Dongqing Wei, Jing-Fang Wang, 2010, J. Chem. Inf. Model..

Identification of target gene and prognostic evaluation for lung adenocarcinoma using gene expression meta-analysis, network analysis and neural network algorithms

Aman Chandra Kaushik, Dongqing Wei, William C. S. Cho, 2018, J. Biomed. Informatics.

Exosomal ncRNAs profiling of mycobacterial infection identified miRNA-185-5p as a novel biomarker for tuberculosis

Li Lin, Dongqing Wei, A. Kaushik, 2021, Briefings Bioinform..

BC-TFdb: a database of transcription factor drivers in breast cancer

Muhammad Waseem, Dongqing Wei, Syed Shujait Ali, 2021, Database J. Biol. Databases Curation.

novoPathFinder: a webserver of designing novel-pathway with integrating GEM-model

Shaozhen Ding, Pengli Cai, Weizhong Tu, 2020, Nucleic Acids Res..

CoronaPep: An Anti-Coronavirus Peptide Generation Tool

Xiaofeng Dai, Dongqing Wei, A. Kaushik, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Effects of CYP2C9*3 and CYP2C9*13 on Diclofenac Metabolism and Inhibition-based Drug-Drug Interactions.

Duan Liu, Dongqing Wei, Jing Zi, 2010, Drug metabolism and pharmacokinetics.

Effects of CYP 2 C 9 * 3 and CYP 2 C 9 * 13 on Diclofenac Metabolism and Inhibition-based Drug-Drug Interactions

Duan Liu, Dongqing Wei, Juanli Zhu, 2010 .

A Novel Mathematical Model That Predicts the Protection Time of SARS-CoV-2 Antibodies

J. Demongeot, Dongqing Wei, Zhaobin Xu, 2023, Viruses.

Structural probing of HapR to identify potent phytochemicals to control Vibrio cholera through integrated computational approaches

Muhammad Usman Mirza, Ahmad Almatroudi, Muhammad Tahir Ul Qamar, 2021, Comput. Biol. Medicine.

Conformational Preferences of π–π Stacking Between Ligand and Protein, Analysis Derived from Crystal Structure Data Geometric Preference of π–π Interaction

Dongqing Wei, W. Fu, Zhengtian Yu, 2015, Interdisciplinary Sciences: Computational Life Sciences.

Molecular modeling and chemical modification for finding peptide inhibitor against severe acute respiratory syndrome coronavirus main proteinase

Kuo-Chen Chou, Qishi Du, Dongqing Wei, 2004, Analytical Biochemistry.

Virtual Screening for SARS-CoV Protease Based on KZ7088 Pharmacophore Points

Kuo-Chen Chou, Qishi Du, Dongqing Wei, 2004, J. Chem. Inf. Model..

WGX-50, a drug candidate from Sichuan pepper and its potential role against ad and in antiaging

Dongqing Wei, 2017 .

Exploring the Molecular Basis of Substrate and Product Selectivities of Nocardicin Bifunctional Thioesterase

Dongqing Wei, Ting Shi, Yi-Lei Zhao, 2021, Interdisciplinary sciences, computational life sciences.

Inhibitory effect of thymoquinone from Nigella sativa against SARS-CoV-2 main protease. An in-silico study.

Dongqing Wei, T. Nadeem, M. T. Khan, 2022, Brazilian journal of biology = Revista brasleira de biologia.

High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer

Jie Liu, Xiangke Liao, Shaoliang Peng, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

mAMBER: A CPU/MIC collaborated parallel framework for AMBER on Tianhe-2 supercomputer

Kai Lu, Jie Liu, Canqun Yang, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

LMI-DForest: A deep forest model towards the prediction of lncRNA-miRNA interactions

Wei Wang, Xiaoqing Guan, Muhammad Tahir Khan, 2020, Comput. Biol. Chem..

Towards an Ensemble Vaccine against the Pegivirus Using Computational Modelling Approaches and Its Validation through In Silico Cloning and Immune Simulation

Syed Shujait Ali, Syed Nouman Nasir, Dongqing Wei, 2021, Vaccines.

Correlations of amino acids in proteins

Kuo-Chen Chou, Qishi Du, Dongqing Wei, 2003, Peptides.

AdaPPI: identification of novel protein functional modules via adaptive graph convolution networks in a protein-protein interaction network

Chaojie Ji, Yunpeng Cai, Hongyan Wu, 2022, Briefings Bioinform..

A Hadoop-Based Method to Predict Potential Effective Drug Combination

Yi Xiong, Dongqing Wei, Qian Xu, 2014, BioMed research international.

Helix-Switch Enables C99 Dimer Transition between the Multiple Conformations

Dong-Qing Wei, Cheng-Dong Li, Muhammad Junaid, 2019, J. Chem. Inf. Model..

Integrated models of blood protein and metabolite enhance the diagnostic accuracy for Non-Small Cell Lung Cancer

Dongqing Wei, Hao Wang, S. Xia, 2023, Biomarker Research.

dbAMEPNI: a database of alanine mutagenic effects for protein–nucleic acid interactions

Ling Liu, Yi Xiong, Julie C. Mitchell, 2018, Database J. Biol. Databases Curation.

LUNAR :Drug Screening for Novel Coronavirus Based on Representation Learning Graph Convolutional Network

Dongqing Wei, Xiaolan Xie, Shaoliang Peng, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

MDA-CF: Predicting MiRNA-Disease associations based on a cascade forest model by fusing multi-source information

Yanyi Chu, Xueying Mao, Yi Xiong, 2021, Comput. Biol. Medicine.

Appendant structure plays an important role in amyloidogenic cystatin dimerization prior to domain swapping

Youtao Song, Dongqing Wei, Xin Liu, 2012, Journal of biomolecular structure & dynamics.

Insights into the Mechanisms of the Pyrazinamide Resistance of Three Pyrazinamidase Mutants N11K, P69T, and D126N.

Dong-Qing Wei, Muhammad Tahir Khan, Shaukat Iqbal Malik, 2018, Journal of chemical information and modeling.

A drug information embedding method based on graph convolution neural network

Fei Li, Xiangxiang Zeng, Dongqing Wei, 2021, 2020 IEEE International Conference on E-health Networking, Application & Services (HEALTHCOM).

A Self-attention Graph Convolutional Network for Precision Multi-tumor Early Diagnostics with DNA Methylation Data

Dongqing Wei, A. Mehmood, Yanyi Chu, 2023, Interdisciplinary Sciences Computational Life Sciences.

Assessment of chemical libraries for their druggability

Kuo-Chen Chou, Qishi Du, George E. Hatzakis, 2005, Comput. Biol. Chem..