A. Ham

发表

Cyclin-Dependent Kinase 2 – Dependent Phosphorylation of ATRIP Regulates the G 2M Checkpoint Response to DNA Damage

J. Myers, R. Zhao, Xin Xu, 2007 .

Cyclin-dependent kinase 2 dependent phosphorylation of ATRIP regulates the G2-M checkpoint response to DNA damage.

Xin Xu, Amy-Joan L Ham, J. Myers, 2007, Cancer research.

TagRecon: high-throughput mutation identification through sequence tagging.

D. Tabb, R. Slebos, A. Ham, 2010, Journal of proteome research.

Methods for Peptide and Protein Quantitation by Liquid Chromatography-Multiple Reaction Monitoring Mass Spectrometry*

P. Massion, D. Carbone, R. Slebos, 2011, Molecular & Cellular Proteomics.

P-Mod: an algorithm and software to map modifications to peptide sequences using tandem MS data.

D. Liebler, A. Ham, S. Davey, 2005, Journal of proteome research.

Microtubule-dependent association of AKAP350A and CCAR1 with RNA stress granules.

A. Rishi, A. Ham, M. Larocca, 2009, Experimental cell research.

Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry.

D. Tabb, R. Slebos, D. Liebler, 2008, Journal of proteome research.

DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring.

David L Tabb, Matthew C Chambers, Amy-Joan L Ham, 2008, Journal of proteome research.

Phosphoproteomic mass spectrometry profiling links Src family kinases to escape from HER2 tyrosine kinase inhibition

G. Mills, Jenny C. Chang, D. Liebler, 2011, Oncogene.

New immunoaffinity-LC-MS/MS methodology reveals that Aag null mice are deficient in their ability to clear 1,N6-etheno-deoxyadenosine DNA lesions from lung and liver in vivo.

L. Samson, L. Meira, B. Engelward, 2004, DNA repair.

Identification of the protein targets of the reactive metabolite of teucrin A in vivo in the rat.

L. Marnett, A. Ham, R. Mernaugh, 2007, Chemical research in toxicology.

Spin filter–based sample preparation for shotgun proteomics

D. Liebler, A. Ham, 2009, Nature Methods.

Methods for Measuring DNA Adducts and Abasic Sites II: Methods for Measurement of DNA Adducts

B. Pachkowski, J. Swenberg, A. Ham, 2002, Current protocols in toxicology.

Identification and Functional Analysis of Phosphorylated Tyrosine Residues within EphA 2 Receptor Tyrosine Kinase *

Dana M. Brantley-Sieders, Jin Chen, D. Brantley-Sieders, 2008 .

Identification and Validation of Novel Spinophilin-associated Proteins in Rodent Striatum Using an Enhanced ex Vivo Shotgun Proteomics Approach*□S

D. Tabb, R. Colbran, A. Ham, 2010 .

A new LC-MS/MS method for the quantification of endogenous and vinyl chloride-induced 7-(2-Oxoethyl)guanine in sprague-dawley rats.

J. Swenberg, A. Ham, Y. Jeong, 2012, Chemical research in toxicology.

Linking Pharmacokinetics and Biomarker Data to Mechanism of Action in Risk Assessment

J. Swenberg, A. Ham, P. Upton, 2002 .

Molecular dosimetry and repair of N(2),3-ethenoguanine in rats exposed to vinyl chloride.

J. Swenberg, A. Ham, Jun Nakamura, 2002, Cancer research.

VASP is a CXCR2-interacting protein that regulates CXCR2-mediated polarization and chemotaxis

A. Ham, A. Richmond, J. Sai, 2009, Journal of Cell Science.

L-type Ca2+ channel facilitation mediated by phosphorylation of the beta subunit by CaMKII.

Mark E. Anderson, Chad E. Grueter, R. Colbran, 2006, Molecular cell.

Antioxidant reactions of vitamin E in rat liver.

A. Ham, 1995 .

Characterization of chemokine receptor CXCR2 interacting proteins using a proteomics approach to define the CXCR2 "chemosynapse".

A. Ham, A. Richmond, J. Sai, 2009, Methods in enzymology.

Proteome of murine jejunal brush border membrane vesicles.

R. Cole, M. Gucek, Siddharth Singh, 2007, Journal of proteome research.

Simultaneous quantitation of N(2),3-ethenoguanine and 1,N(2)-ethenoguanine with an immunoaffinity/gas chromatography/high-resolution mass spectrometry assay.

J. Swenberg, A. Ham, E. Morinello, 2001, Chemical research in toxicology.

Immunoaffinity/gas chromatography/high-resolution mass spectrometry method for the detection of N(2),3-ethenoguanine.

J. Swenberg, A. Ham, F. Johnson, 1999, Chemical research in toxicology.

DNA adducts: effects of low exposure to ethylene oxide, vinyl chloride and butadiene.

J A Swenberg, N. Tretyakova, J. Swenberg, 2000, Mutation research.

RETRACTED: L-Type Ca2+ Channel Facilitation Mediated by Phosphorylation of the β Subunit by CaMKII

Mark E. Anderson, Peter J. Mohler, Yuejin Wu, 2006 .

A Sulfilimine Bond Identified in Collagen IV

T. Veenstra, C. Sanders, T. Conrads, 2009, Science.

A Dynamic Pathway for Calcium-Independent Activation of CaMKII by Methionine Oxidation

Mark E. Anderson, Peter J. Mohler, Amy-Joan L. Ham, 2008, Cell.

Identification of Regulatory Phosphorylation Sites in a Cell Volume– and Ste20 Kinase–dependent ClC Anion Channel

R. Morrison, A. Ham, K. Strange, 2009, The Journal of general physiology.

Gas chromatography-mass spectrometry analysis of vitamin E and its oxidation products.

D. Liebler, A. Ham, J. Burr, 1996, Analytical biochemistry.

Precision of Multiple Reaction Monitoring Mass Spectrometry Analysis of Formalin-Fixed, Paraffin-Embedded Tissue

M. Washington, M. Sanders, D. Liebler, 2012, Journal of proteome research.

Use of Fluorescence-activated Vesicle Sorting for Isolation of Naked2-associated, Basolaterally Targeted Exocytic Vesicles for Proteomics Analysis*S

Kristin L Cheek, R. Coffey, D. Tabb, 2008, Molecular & Cellular Proteomics.

Prostate cancer serum biomarker discovery through proteomic analysis of alpha‐2 macroglobulin protein complexes

Dean Billheimer, David L Tabb, Amy-Joan L Ham, 2008, Proteomics. Clinical applications.

Eto2/MTG16 and MTGR1 are heteromeric corepressors of the TAL1/SCL transcription factor in murine erythroid progenitors.

M. Koury, A. Ham, S. Hiebert, 2009, Biochemical and biophysical research communications.

Increased p53 mutation load in noncancerous colon tissue from ulcerative colitis: a cancer-prone chronic inflammatory disease.

K Raja, J A Swenberg, W P Bennett, 2000, Cancer research.

Increasedp53 Mutation Load in Noncancerous Colon Tissue from Ulcerative Colitis: A Cancer-prone Chronic Inflammatory Disease

C. Harris, S. Ambs, P. Shields, 2000 .

Rab11-FIP2 influences multiple components of the endosomal system in polarized MDCK cells

Nicole A. Ducharme, A. Ham, L. Lapierre, 2011, Cellular logistics.

Elucidating the mechanism of regulation of transforming growth factor β Type II receptor expression in human lung cancer cell lines.

D. Carbone, Yong-jig Cho, A. Ham, 2011, Neoplasia.

Identification and Validation of Novel Spinophilin-associated Proteins in Rodent Striatum Using an Enhanced ex Vivo Shotgun Proteomics Approach*

D. Tabb, R. Colbran, L. Carmody, 2010, Molecular & Cellular Proteomics.

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry.

Birgit Schilling, Lisa J Zimmerman, Christopher R Kinsinger, 2010, Journal of proteome research.

Gas chromatography-mass spectrometry analysis of vitamin E and its oxidation products.

D. Liebler, A. Ham, J. Burr, 1996, Methods in enzymology.

Label-Free Quantitation of Protein Modifications by Pseudo Selected Reaction Monitoring with Internal Reference Peptides

Brendan MacLean, Daniel C. Liebler, Michael J. MacCoss, 2012, Journal of proteome research.

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses*

David L. Tabb, Daniel C. Liebler, Stephen E. Stein, 2009, Molecular & Cellular Proteomics.

Identification of novel Smad2 and Smad3 associated proteins in response to TGF‐β1

H. Moses, J. Pietenpol, A. Ham, 2008, Journal of cellular biochemistry.

Identification of a Novel Isoform of Microsomal Triglyceride Transfer Protein*

A. Ham, G. S. Shelness, P. Mohler, 2007, Journal of Biological Chemistry.

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Christoph H Borchers, Birgit Schilling, Michael P. Cusack, 2009, Nature Biotechnology.

Sample preparation and digestion for proteomic analyses using spin filters

Amy-Joan L Ham, Daniel C Liebler, A. Ham, 2005, Proteomics.

Proteomic Analysis of Exosomes from Mutant KRAS Colon Cancer Cells Identifies Intercellular Transfer of Mutant KRAS*

R. Coffey, J. Franklin, D. Liebler, 2012, Molecular & Cellular Proteomics.

Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance*

Birgit Schilling, Lisa J Zimmerman, Christopher R Kinsinger, 2009, Molecular & Cellular Proteomics.

Quinone-induced enhancement of DNA cleavage by human topoisomerase IIalpha: adduction of cysteine residues 392 and 405.

N. Osheroff, A. Ham, R. Bender, 2007, Biochemistry.

Identification of phosphorylation sites in glycine N‐methyltransferase from rat liver

R. Caprioli, A. Ham, J. L. Norris, 2006, Protein science : a publication of the Protein Society.

Heterologous expression, purification, and properties of human cytochrome P450 27C1.

F. Guengerich, A. Ham, Z. Wu, 2006, Archives of biochemistry and biophysics.

A Role for Collagen IV Cross-links in Conferring Immune Privilege to the Goodpasture Autoantigen

A. Ham, Y. Sado, B. Hudson, 2008, Journal of Biological Chemistry.

Proteomic profiling of paraffin-embedded samples identifies metaplasia-specific and early-stage gastric cancer biomarkers.

B. LaFleur, Bing Zhang, D. Liebler, 2012, The American journal of pathology.

The Selenium-rich C-terminal Domain of Mouse Selenoprotein P Is Necessary for the Supply of Selenium to Brain and Testis but Not for the Maintenance of Whole Body Selenium*

J. F. Atkins, R. Gesteland, A. Ham, 2007, Journal of Biological Chemistry.

Verification of automated peptide identifications from proteomic tandem mass spectra

David L Tabb, Amy-Joan L Ham, David B Friedman, 2006, Nature Protocols.

Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment.

David L Tabb, Surendra Dasari, Matthew C Chambers, 2012, Journal of proteome research.

Characterization of immunoisolated human gastric parietal cells tubulovesicles: identification of regulators of apical recycling.

A. Ham, L. Lapierre, J. Goldenring, 2007, American journal of physiology. Gastrointestinal and liver physiology.

Vitamin E oxidation in rat liver mitochondria.

D. Liebler, A. Ham, 1995, Biochemistry.

Antioxidant reactions of vitamin E in the perfused rat liver: product distribution and effect of dietary vitamin E supplementation.

D. Liebler, A. Ham, 1997, Archives of biochemistry and biophysics.

Scaffolding Protein INAD Regulates Deactivation of Vision by Promoting Phosphorylation of Transient Receptor Potential by Eye Protein Kinase C in Drosophila

A. Ham, B. Shieh, Daniela C. Popescu, 2006, The Journal of Neuroscience.

MARK2/EMK1/Par-1Balpha phosphorylation of Rab11-family interacting protein 2 is necessary for the timely establishment of polarity in Madin-Darby canine kidney cells.

Nicole A. Ducharme, Chadwick M. Hales, A. Ham, 2006, Molecular biology of the cell.

MARK 2 / EMK 1 / Par-1 B Phosphorylation of Rab 11-Family Interacting Protein 2 Is Necessary for the Timely Establishment of Polarity in Madin-Darby Canine Kidney Cells

Nicole A. Ducharme, A. Ham, L. Lapierre, 2005 .

Intracellular Src Family Kinases Mediate PI3K-Akt Pathway Activation and Resistance to Lapatinib in HER2-Overexpressing Human Breast Cancer Cells.

D. Liebler, A. Ham, S. Hill, 2009 .

Identification and Functional Analysis of Phosphorylated Tyrosine Residues within EphA2 Receptor Tyrosine Kinase*

Dana M. Brantley-Sieders, Jin Chen, D. Brantley-Sieders, 2008, Journal of Biological Chemistry.

Methods for Measuring DNA Adducts and Abasic Sites I: Isolation, Purification, and Analysis of DNA Adducts in Intact DNA

J. Swenberg, A. Ham, Jun Nakamura, 2002, Current protocols in toxicology.

IQGAP1 Is a Novel CXCR2-Interacting Protein and Essential Component of the “Chemosynapse”

A. Ham, A. Richmond, J. Sai, 2011, PloS one.

Corrigendum: Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Christoph H Borchers, Jing Li, Birgit Schilling, 2009, Nature Biotechnology.

Identification of S-hydroxylysyl-methionine as the covalent cross-link of the noncollagenous (NC1) hexamer of the alpha1alpha1alpha2 collagen IV network: a role for the post-translational modification of lysine 211 to hydroxylysine 211 in hexamer assembly.

A. Ham, D. Friedman, B. Hudson, 2005, The Journal of biological chemistry.

Four and a half LIM protein 1: a partner for KCNA5 in human atrium.

K. Murray, A. Link, A. Ham, 2008, Cardiovascular research.

Formation and repair of DNA adducts in vinyl chloride- and vinyl fluoride-induced carcinogenesis.

J. Swenberg, A. Ham, M. Bogdanffy, 1999, IARC scientific publications.

IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.

David L Tabb, J. L. Turner, Matthew C Chambers, 2013, Journal of proteome research.

ScanRanker: Quality assessment of tandem mass spectra via sequence tagging.

Birgit Schilling, David L Tabb, Matthew C Chambers, 2011, Journal of proteome research.

4-Hydroxy-2-nonenal and ethyl linoleate form N(2),3-ethenoguanine under peroxidizing conditions.

J. Swenberg, A. Ham, A. Ranasinghe, 2000, Chemical research in toxicology.

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma

Michael P. Cusack, Susan E. Abbatiello, Jeffrey R. Whiteaker, 2009, Nature Biotechnology.

TagRecon: high-throughput mutation identification through sequence tagging.

D. Tabb, R. Slebos, A. Ham, 2010, Journal of proteome research.

A Sulfilimine Bond Identified in Collagen IV

T. Veenstra, C. Sanders, T. Conrads, 2009, Science.