Mana Umeda

发表

Genome-wide analysis of transcriptional bursting-induced noise in mammalian cells

H. Kimura, Zhe Liu, I. Nikaido, 2019, bioRxiv.

An NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data

H. Okano, I. Nikaido, Tetsutaro Hayashi, 2019, NAR genomics and bioinformatics.

A NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data

H. Okano, I. Nikaido, Tetsutaro Hayashi, 2019, bioRxiv.

Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs

I. Nikaido, Tetsutaro Hayashi, Mana Umeda, 2018, Nature Communications.

Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets

I. Nikaido, Tetsutaro Hayashi, Mana Umeda, 2020, BMC Genomics.

The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression.

Yutaka Suzuki, T. Kasukawa, N. Yumoto, 2020, Cell reports.

Polysaccharide hydrolase of the hadal zone amphipods Hirondellea gigas

H. Watanabe, I. Nikaido, Tetsutaro Hayashi, 2018, Bioscience, biotechnology, and biochemistry.

Tracing the origin of hair follicle stem cells

T. Abe, H. Kiyonari, T. Shibata, 2021, Nature.

Local states of chromatin compaction at transcription start sites control transcription levels

S. Ishihara, I. Nikaido, Mana Umeda, 2021, Nucleic acids research.

The local state of chromatin compaction at transcription start sites controls transcription levels

S. Ishihara, I. Nikaido, Mana Umeda, 2019, bioRxiv.

Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs

I. Nikaido, Tetsutaro Hayashi, Mana Umeda, 2018, Nature Communications.

Derepression of inflammation-related genes link to microglia activation and neural maturation defect in a mouse model of Kleefstra syndrome

S. Itohara, I. Nikaido, Y. Shinkai, 2021, iScience.

Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells

H. Kimura, I. Nikaido, Y. Ohkawa, 2020, Science Advances.

Enhanced transcriptional heterogeneity mediated by NF-κB super-enhancers

N. Yumoto, Y. Sako, I. Nikaido, 2022, PLoS genetics.

Imaging and single cell sequencing analyses of super-enhancer activation mediated by NF-κB in B cells

N. Yumoto, Y. Sako, I. Nikaido, 2021, bioRxiv.

The novel heme-dependent inducible protein, SRRD regulates heme biosynthesis and circadian rhythms.

Y. Ohkawa, Tetsuya Sato, Mana Umeda, 2017, Archives of biochemistry and biophysics.

Single‐oocyte transcriptome analysis reveals aging‐associated effects influenced by life stage and calorie restriction

T. Kitajima, I. Nikaido, H. Hamada, 2021, Aging cell.

Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets

Haruka Ozaki, Tetsutaro Hayashi, Mana Umeda, 2019, BMC Genomics.

The p53‐Dependent Expression of Frataxin Controls 5‐Aminolevulinic Acid‐Induced Accumulation of Protoporphyrin IX and Photo‐Damage in Cancerous Cells

Mana Umeda, T. Kataoka, S. Taketani, 2013, Photochemistry and photobiology.

Maternal epigenetic factors in embryonic and postnatal development

I. Nikaido, H. Hamada, Tetsutaro Hayashi, 2023, Genes to cells : devoted to molecular & cellular mechanisms.