Julien Racle

发表

Noise analysis of genome-scale protein synthesis using a discrete computational model of translation.

V. Hatzimanikatis, Julien Racle, A. Stefaniuk, 2015, The Journal of chemical physics.

Personalized cancer vaccine effectively mobilizes antitumor T cell immunity in ovarian cancer

Brian J. Stevenson, D. Torigian, H. Nisenbaum, 2018, Science Translational Medicine.

Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data

D. Speiser, P. Baumgaertner, D. Gfeller, 2017, bioRxiv.

Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data

D. Speiser, P. Baumgaertner, D. Gfeller, 2017, bioRxiv.

Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes

George Coukos, David Gfeller, Philippe Guillaume, 2019, Nature Biotechnology.

Deep motif deconvolution of HLA-II peptidomes for robust class II epitope predictions

George Coukos, David Gfeller, Philippe Guillaume, 2019, bioRxiv.

The Length Distribution and Multiple Specificity of Naturally Presented HLA-I Ligands

George Coukos, David Gfeller, Philippe Guillaume, 2018, The Journal of Immunology.

Cathepsin S Regulates Antigen Processing and T Cell Activity in Non-Hodgkin Lymphoma.

A. Mottok, R. Kridel, C. Steidl, 2020, Cancer cell.

Analysis of Translation Elongation Dynamics in the Context of an Escherichia coli Cell.

Joana Raquel Pinto Vieira, V. Hatzimanikatis, Julien Racle, 2016, Biophysical journal.

EPIC: A Tool to Estimate the Proportions of Different Cell Types from Bulk Gene Expression Data.

D. Gfeller, Julien Racle, 2020, Methods in molecular biology.

Mass Spectrometry Based Immunopeptidomics Leads to Robust Predictions of Phosphorylated HLA Class I Ligands*

Markus Müller, G. Coukos, D. Gfeller, 2019, Molecular & Cellular Proteomics.

Mass Spectrometry Based Immunopeptidomics Leads to Robust Predictions of Phosphorylated HLA Class I Ligands*

Markus Müller, G. Coukos, D. Gfeller, 2019, Molecular & Cellular Proteomics.

Predictions of immunogenicity reveal potent SARS-CoV-2 CD8+ T-cell epitopes

A. Harari, D. Gfeller, Julien Racle, 2022, bioRxiv.

The Length Distribution and Multiple Specificity of Naturally Presented HLA-I Ligands

G. Coukos, D. Gfeller, Julien Racle, 2018, The Journal of Immunology.

Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes

G. Coukos, A. Harari, D. Gfeller, 2022, bioRxiv.

High-throughput and sensitive immunopeptidomics platform reveals profound (cid:44)(cid:41)(cid:49)(cid:534) -mediated remodeling of the HLA ligandome

G. Coukos, D. Gfeller, Julien Racle, 2017 .

Where is my Self ? Experimentally Induced “ Whole Body Illusions ” in Healthy Subjects using Virtual Reality Students

Julien Racle, Simon Ruffieux, J. Rentsch, 2007 .

Prediction of neo-epitope immunogenicity reveals TCR recognition determinants and provides insight into immunoediting

Santiago J. Carmona, G. Ciriello, G. Coukos, 2021, Cell reports. Medicine.

High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome*

Markus Müller, G. Coukos, D. Gfeller, 2017, Molecular & Cellular Proteomics.

Deciphering the landscape of phosphorylated HLA-II ligands

G. Coukos, D. Gfeller, M. Solleder, 2021, bioRxiv.

A Phase Ib Study of the Combination of Personalized Autologous Dendritic Cell Vaccine, Aspirin, and Standard of Care Adjuvant Chemotherapy Followed by Nivolumab for Resected Pancreatic Adenocarcinoma—A Proof of Antigen Discovery Feasibility in Three Patients

Brian J. Stevenson, N. Demartines, G. Coukos, 2019, Front. Immunol..

Sensitive and frequent identification of high avidity neo-epitope specific CD8+ T cells in immunotherapy-naive ovarian cancer

Brian J. Stevenson, G. Coukos, D. Monos, 2018, Nature Communications.

Inflammatory B cells correlate with failure to checkpoint blockade in melanoma patients

M. Delorenzi, D. Speiser, P. Baumgaertner, 2021, Oncoimmunology.

Contemplating immunopeptidomes to better predict them.

Yan Liu, D. Gfeller, Julien Racle, 2023, Seminars in immunology.

Improved predictions of antigen presentation and TCR recognition with MixMHCpred2.2 and PRIME2.0 reveal potent SARS-CoV-2 CD8+ T-cell epitopes

A. Harari, D. Gfeller, Julien Racle, 2022, Cell Systems.

The MHC Motif Atlas: a database of MHC binding specificities and ligands

D. Gfeller, Julien Racle, Daniel M Tadros, 2022, Nucleic Acids Res..

Tumour-derived PGD2 and NKp30-B7H6 engagement drives an immunosuppressive ILC2-MDSC axis

G. Coukos, C. Akdis, S. Minucci, 2017, Nature Communications.

Immunopeptidomics of colorectal cancer organoids reveals a sparse HLA class I neoantigen landscape and no increase in neoantigens with interferon or MEK-inhibitor treatment

Brian J. Stevenson, G. Coukos, M. Gerlinger, 2019, Journal of Immunotherapy for Cancer.

ILC2-modulated T cell–to-MDSC balance is associated with bladder cancer recurrence

D. Speiser, D. Gfeller, Julien Racle, 2017, The Journal of clinical investigation.

A Novel Pulse-Chase SILAC Strategy Measures Changes in Protein Decay and Synthesis Rates Induced by Perturbation of Proteostasis with an Hsp90 Inhibitor

Céline Hernandez, V. Hatzimanikatis, M. Quadroni, 2013, PloS one.

A computational framework for the design of optimal protein synthesis

Vassily Hatzimanikatis, Jan Overney, Julien Racle, 2012, Biotechnology and bioengineering.

Dynamic Impacts of the Inhibition of the Molecular Chaperone Hsp90 on the T-Cell Proteome Have Implications for Anti-Cancer Therapy

Céline Hernandez, M. Quadroni, Julien Racle, 2013, PloS one.

Sensitive and frequent identification of high avidity neo-epitope specific CD8+ T cells in immunotherapy-naive ovarian cancer

Brian J. Stevenson, I. Xenarios, G. Coukos, 2018, Nature Communications.

A Genome-Scale Integration and Analysis of Lactococcus lactis Translation Data

Vassily Hatzimanikatis, Julien Racle, Flora Picard, 2013, PLoS Comput. Biol..

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Oliver Horlacher, Damian Szklarczyk, Christian von Mering, 2015, Nucleic Acids Res..

Cathepsin SRegulatesAnt igenProcessing andTCell Activity in Non-Hodgkin Lymphoma

A. Mottok, R. Kridel, C. Steidl, 2022 .

Tumour-derived PGD2 and NKp30-B7H6 engagement drives an immunosuppressive ILC2-MDSC axis

G. Coukos, C. Akdis, S. Minucci, 2017, Nature Communications.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Joshua L. Payne, Christian J. A. Sigrist, Brian J. Stevenson, 2015, Nucleic Acids Res..

Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data

D. Speiser, D. Gfeller, Julien Racle, 2017, bioRxiv.

Noise analysis of genome-scale protein synthesis using a discrete computational model of translation.

V. Hatzimanikatis, Julien Racle, A. Stefaniuk, 2015, The Journal of chemical physics.