J. Noorbakhsh

发表

Intrinsic Noise of microRNA-Regulated Genes and the ceRNA Hypothesis

Pankaj Mehta, Alex H. Lang, Javad Noorbakhsh, 2012, PloS one.

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images

Jeffrey H. Chuang, D. Rimm, J. Noorbakhsh, 2020, Nature communications.

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images

Jeffrey H. Chuang, Ali Foroughi pour, D. Rimm, 2019, Nature Communications.

Uncertainties in tumor allele frequencies limit power to infer evolutionary pressures

Jeffrey H. Chuang, J. Noorbakhsh, 2017, Nature Genetics.

Machine Learning in Biology and Medicine

Joshy George, Javad Noorbakhsh, J. George, 2019, Advances in Molecular Pathology.

From intracellular signaling to population oscillations: bridging size- and time-scales in collective behavior

David J Schwab, Pankaj Mehta, Thomas Gregor, 2015, Molecular systems biology.

Distribution-based measures of tumor heterogeneity are sensitive to mutation calling and lack strong clinical predictive power

Jeffrey H. Chuang, J. Noorbakhsh, Sandeep Namburi, 2018, Scientific Reports.

Treating Cancer as an Invasive Species

Jeffrey H. Chuang, J. Noorbakhsh, J. Russell, 2019, Molecular Cancer Research.

Evolution of an intratumoral ecology susceptible to successive treatment in breast cancer xenografts

Jeffrey H. Chuang, C. Bult, J. George, 2018, bioRxiv.

High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts

Jeffrey H. Chuang, C. Bult, J. George, 2018, Scientific Reports.

Repeat expansions confer WRN dependence in microsatellite-unstable cancers

K. Garimella, S. West, P. Meltzer, 2020, Nature.

LONGITUDINAL MOLECULAR TRAJECTORIES OF DIFFUSE GLIOMA IN ADULTS

Jeffrey H. Chuang, Kevin C. Johnson, Lucy F. Stead, 2019, Nature.

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images: Pan-cancer classifications of tumor histological images using deep learning

J. Noorbakhsh, Sandeep Namburi, S. Farahmand, 2020 .

Computational estimation of quality and clinical relevance of cancer cell lines

James M. McFarland, F. Iorio, F. Vazquez, 2022, Molecular systems biology.

Germline variation contributes to false negatives in CRISPR-based experiments with varying burden across ancestries

Joshua M. Dempster, Thomas M Green, R. Beroukhim, 2022, bioRxiv.

Bridging the gap between cancer cell line models and tumours using gene expression data

James M. McFarland, F. Vazquez, J. Noorbakhsh, 2021, British Journal of Cancer.

Repeat Expansions Confers WRN Dependence in Microsatellite Unstable 1 Cancers

Anthony, Tubbs, K. Garimella, 2020 .

Pan-cancer classifications of tumor histological images using deep learning

Kourosh Zarringhalam, Sandeep Namburi, Jeffrey H. Chuang, 2019, bioRxiv.

CamDavidsonPilon/lifelines: v0.23.8

Lilian Besson, Jonas Kalderstam, Cameron Davidson-Pilon, 2020 .

Repeat expansions confer WRN dependence in microsatellite-unstable cancers

K. Garimella, S. West, P. Meltzer, 2020, Nature.

CamDavidsonPilon/lifelines: v0.25.11

D. Golland, Skipper Seabold, A. Fiore-Gartland, 2020 .

CCNE1 amplification is associated with poor prognosis in patients with triple negative breast cancer

Jeffrey H. Chuang, Yate-Ching Yuan, K. Hutchinson, 2019, BMC Cancer.

1-21-2019 CCNE 1 amplification is associated with poor prognosis in patients with triple negative breast cancer

Jeffrey H. Chuang, Yate-Ching Yuan, K. Hutchinson, 2019 .

Cellos: High-throughput deconvolution of 3D organoid dynamics at cellular resolution for cancer pharmacology

Jeffrey H. Chuang, Olga Anczuków, J. Noorbakhsh, 2023, bioRxiv.

CamDavidsonPilon/lifelines: v0.24.16

D. Golland, A. Flaxman, A. Fiore-Gartland, 2020 .

Modeling oscillations and spiral waves in Dictyostelium populations.

Thomas Gregor, David J Schwab, Pankaj Mehta, 2014, Physical review. E, Statistical, nonlinear, and soft matter physics.

Integrative Deep Learning for PanCancer Molecular Subtype Classification Using Histopathological Images and RNAseq Data

Fatima Zare, Sheida Nabavi, Jeffrey H. Chuang, 2020, BCB.

An Evaluation of Water Quality from Siahrod River, Haraz River and Babolrood River by NSFWQI index

J. Noorbakhsh, N. Mehrdadi, Gholamreza Darvishi, 2014 .

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images

Jeffrey H. Chuang, D. Rimm, J. Noorbakhsh, 2020, Nature Communications.

Simulating the phase behavior of the Kuramoto tree

J. Noorbakhsh, mohammad Nouhi, 2023, 2306.14928.

Investigation of Qualitative Condition of Nekarud River and Tajan River by NSFWQI Index

M. Dadashpour, J. Noorbakhsh, Gholamreza Darvishi, 2015 .

Supporting Information Two-Dimensionality of Yeast Colony Expansion Accompanied by Pattern Formation

Lin Chen, Gábor Balázsi, Pankaj Mehta, 2014 .

Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images

Ali Foroughi pour, J. Noorbakhsh, Sandeep Namburi, 2020, Nature Communications.