Judith Klein-Seetharaman

发表

Learning of protein interaction networks

Ziv Bar-Joseph, Judith Klein-Seetharaman, Yanjun Qi, 2008 .

Identification of fundamental building blocks in protein sequences using statistical association measures

Judith Klein-Seetharaman, Deborah K. Weisser, J. Klein-Seetharaman, 2004, SAC '04.

Signal Processing in Genomics and Proteomics: Defining Its Role [From the Guest Editors]

Judith Klein-Seetharaman, Ahmed H. Tewfik, Peter Beyerlein, 2012, IEEE Signal Process. Mag..

Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1

Sivaraman Balakrishnan, Jaime G. Carbonell, Judith Klein-Seetharaman, 2009, 2009 IEEE International Workshop on Genomic Signal Processing and Statistics.

Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources

Yanjun Qi, Ziv Bar-Joseph, Judith Klein-Seetharaman, 2004, Pacific Symposium on Biocomputing.

Towards Biomedical Problem Solving in a Game Environment

Judith Klein-Seetharaman, Yang Cai, Ingo Snel, 2003, International Conference on Computational Science.

Multitask Matrix Completion for Learning Protein Interactions Across Diseases

Jaime G. Carbonell, Judith Klein-Seetharaman, Meghana Kshirsagar, 2016, RECOMB.

Prediction of Interactions Between HIV-1 and Human Proteins by Information Integration

Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman, 2008, Pacific Symposium on Biocomputing.

A Sequence Alignment-Independent Method for Protein Classification

Judith Klein-Seetharaman, Ivet Bahar, Panayiotis V. Benos, 2004, Applied bioinformatics.

Transmembrane helix prediction using amino acid property features and latent semantic analysis

Narayanaswamy Balakrishnan, Judith Klein-Seetharaman, Raj Reddy, 2008, BMC Bioinformatics.

Refining Literature Curated Protein Interactions Using Expert Opinions

Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman, 2014, Pacific Symposium on Biocomputing.

Protein complex identification by supervised graph local clustering

Yanjun Qi, Christos Faloutsos, Ziv Bar-Joseph, 2008, ISMB.

Multisource transfer learning for host-pathogen protein interaction prediction in unlabeled tasks

Jaime G. Carbonell, Judith Klein-Seetharaman, Meghana Kshirsagar, 2013 .

Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors

Judith Klein-Seetharaman, Kalyan C. Tirupula, Naveena Yanamala, 2008, BMC Bioinformatics.

Collaborative Discovery Through Biological Language Modeling Interface

Judith Klein-Seetharaman, Madhavi Ganapathiraju, Raj Reddy, 2006, Ambient Intelligence in Everyday.

A mixture of feature experts approach for protein-protein interaction prediction

Ziv Bar-Joseph, Judith Klein-Seetharaman, Yanjun Qi, 2007, BMC Bioinformatics.

Determining Confidence of Predicted Interactions Between HIV-1 and Human Proteins Using Conformal Method

Yanjun Qi, Judith Klein-Seetharaman, Alexander Gammerman, 2011, Pacific Symposium on Biocomputing.

Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments

Judith Klein-Seetharaman, Oznur Tastan, Christopher James Langmead, 2010, 2010 5th International Conference on System of Systems Engineering.

BioSim--a biomedical character-based problem solving environment

Judith Klein-Seetharaman, Betty Cheng, Yang Cai, 2005, Future Gener. Comput. Syst..

BIPS: BIANA Interolog Prediction Server. A tool for protein–protein interaction inference

Baldomero Oliva, Judith Klein-Seetharaman, Javier García-García, 2012, Nucleic Acids Res..

A Machine Text-Inspired Machine Learning Approach for Identification of Transmembrane Helix Boundaries

Jaime G. Carbonell, Judith Klein-Seetharaman, Betty Yee Man Cheng, 2005, ISMIS.

Computational Biology and Language

Judith Klein-Seetharaman, Narayanas Balakrishnan, Madhavi Ganapathiraju, 2004, Ambient Intelligence for Scientific Discovery.

Early integration of the individual student in academic activities: a novel classroom concept for graduate education in molecular biophysics and structural biology

Judith Klein-Seetharaman, Naveena Yanamala, Sanford H Leuba, 2014, BMC biophysics.

BLMT: statistical sequence analysis using N-grams.

Judith Klein-Seetharaman, Madhavi Ganapathiraju, Vijayalaxmi Manoharan, 2004, Applied bioinformatics.

TMpro web server and web service: transmembrane helix prediction through amino acid property analysis

Judith Klein-Seetharaman, Hassan A. Karimi, Madhavi Ganapathiraju, 2007, Bioinform..

Rare and Frequent N-grams in Whole-genome Protein Sequences

Jaime G. Carbonell, Judith Klein-Seetharaman, Madhavi K. Ganapathiraju, 2002 .

Identification of Potentially Relevant Citeable Articles using Association Rule Mining

Judith Klein-Seetharaman, Selen Uguroglu, Sanford H. Leuba, 2011 .

Virus interactions with human signal transduction pathways

Jaime G. Carbonell, Judith Klein-Seetharaman, Junfeng Xia, 2011, Int. J. Comput. Biol. Drug Des..

Comparison of probabilistic combination methods for protein secondary structure prediction

Jaime G. Carbonell, Judith Klein-Seetharaman, Yan Liu, 2004, Bioinform..

Multitask learning for host–pathogen protein interactions

Jaime G. Carbonell, Judith Klein-Seetharaman, Meghana Kshirsagar, 2013, Bioinform..

BLMT Sequence Analysis Using N-Grams

Judith Klein-Seetharaman, Madhavi K. Ganapathiraju, Vijayalaxmi Manoharan, 2004 .

Techniques to cope with missing data in host–pathogen protein interaction prediction

Jaime G. Carbonell, Judith Klein-Seetharaman, Meghana Kshirsagar, 2012, Bioinform..

Ambient intelligence for scientific discovery

Judith Klein-Seetharaman, Yang Cai, J. Klein-Seetharaman, 2004, CHI EA '04.

Comparative n-gram analysis of whole-genome protein sequences

Jaime G. Carbonell, Judith Klein-Seetharaman, Madhavi K. Ganapathiraju, 2002 .

Comparison of virus interactions with human signal transduction pathways

Judith Klein-Seetharaman, Oznur Tastan, Irtisha Singh, 2010, BCB '10.

Evaluation of different biological data and computational classification methods for use in protein interaction prediction

Ziv Bar-Joseph, Judith Klein-Seetharaman, Yanjun Qi, 2006, Proteins.

Prediction of Anti-parallel and Parallel Beta-sheets using Conditional Random Fields

Jaime G. Carbonell, Judith Klein-Seetharaman, Yan Liu, 2003 .

PROTEINS: Structure, Function, and Bioinformatics 58:955–970 (2005) Protein Classification Based on Text Document Classification Techniques

Judith Klein-Seetharaman, Betty Yee Man Cheng, Jaime G Carbonell, 2022 .

Insulin biosensor development: a case study§

Judith Klein-Seetharaman, Narinder Sanghera, Alexander Anderson, 2017, Int. J. Parallel Emergent Distributed Syst..

Context sensitive vocabulary and its application in protein secondary structure prediction

Jaime G. Carbonell, Judith Klein-Seetharaman, Yan Liu, 2004, SIGIR '04.

Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins

Jason Weston, Jaime G. Carbonell, Judith Klein-Seetharaman, 2010, Bioinform..

Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience

Lenore Cowen, Judith Klein-Seetharaman, Hollie Putnam, 2020, PSB.

Comparative ngram analysis of whole-genome sequences

Jaime G. Carbonell, Judith Klein-Seetharaman, Madhavi K. Ganapathiraju, 2002 .

Additive Effects of Chlorin E6 and Metal Ion Binding on the Thermal Stability of Rhodopsin In Vitro †

Judith Klein-Seetharaman, Naveena Yanamala, Fernanda Balem, 2009, Photochemistry and photobiology.

The brown adipocyte protein CIDEA promotes lipid droplet fusion via a phosphatidic acid-binding amphipathic helix

Judith Klein-Seetharaman, Valerian Kagan, Joan Planas-Iglesias, 2015, eLife.

Identification of core amino acids stabilizing rhodopsin.

Judith Klein-Seetharaman, Ivet Bahar, H Gobind Khorana, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Combined solid state and solution NMR studies of α,ɛ-15N labeled bovine rhodopsin

Harald Schwalbe, Judith Klein-Seetharaman, Christian Richter, 2007 .

Cardiolipin Interactions with Proteins.

Judith Klein-Seetharaman, Joan Planas-Iglesias, Naveena Yanamala, 2015, Biophysical journal.

Ligand-independent antiapoptotic function of estrogen receptor-beta in lung cancer cells.

Judith Klein-Seetharaman, Guangfeng Zhang, Naveena Yanamala, 2010, Molecular endocrinology.

Techniques for transferring host-pathogen protein interactions knowledge to new tasks

Judith Klein-Seetharaman, Meghana Kshirsagar, Jaime Carbonell, 2015, Front. Microbiol..

A Mixture of Experts Approach for Protein-Protein Interaction Prediction

Yanjun Qi, Ziv Bar-Joseph, Judith Klein-Seetharaman, 2005 .

Comparative N-gram Analysis of Genome Sequences

Jaime G. Carbonell, Judith Klein-Seetharaman, Madhavi K. Ganapathiraju, 2001 .

Human immunodeficiency virus type 1 Vpr: oligomerization is an essential feature for its incorporation into virus particles

Judith Klein-Seetharaman, Oznur Tastan, Naveena Yanamala, 2010, Virology Journal.

Carbon nanotubes degraded by neutrophil myeloperoxidase induce less pulmonary inflammation.

Judith Klein-Seetharaman, Bengt Fadeel, Naveena Yanamala, 2010, Nature nanotechnology.

Predisposition of the dark state of rhodopsin to functional changes in structure

Judith Klein-Seetharaman, Ivet Bahar, J. Klein-Seetharaman, 2006, Proteins.

Application of latent semantic analysis using different vocabularies

Judith Klein-Seetharaman, Madhavi K. Ganapathiraju, N. Balakrishnan, .

Systematic prediction of human membrane receptor interactions

Yanjun Qi, Ziv Bar-Joseph, Judith Klein-Seetharaman, 2009, Proteomics.

Alternative paths in HIV-1 targeted human signal transduction pathways

Sivaraman Balakrishnan, Judith Klein-Seetharaman, Oznur Tastan, 2009, BMC Genomics.

Prediction and Comparison of SalmonellaHuman and SalmonellaArabidopsis Interactomes

Judith Klein-Seetharaman, Sylvia Schleker, Javier Garcia-Garcia, 2012, Chemistry & biodiversity.

Allosteric Modulation of G Protein Coupled Receptors by Cytoplasmic, Transmembrane and Extracellular Ligands

Judith Klein-Seetharaman, Naveena Yanamala, J. Klein-Seetharaman, 2010, Pharmaceuticals.

A Novel Method of Protein Secondary Structure Prediction Using Context Sensitive Vocabulary

Judith Klein-Seetharaman, Yan Liu, Vanathi Gopalakrishnan, 2003 .

Combined solid state and solution NMR studies of alpha,epsilon-15N labeled bovine rhodopsin.

Harald Schwalbe, Judith Klein-Seetharaman, H Gobind Khorana, 2007, Journal of biomolecular NMR.

Evolutionary insights from suffix array-based genome sequence analysis

Judith Klein-Seetharaman, Nagasuma Chandra, Madhavi Ganapathiraju, 2007, Journal of Biosciences.

Combined Inhibition of PLCγ-1 and c-Src Abrogates Epidermal Growth Factor Receptor–Mediated Head and Neck Squamous Cell Carcinoma Invasion

Judith Klein-Seetharaman, Alan Wells, Shinsuke Suzuki, 2008, Clinical Cancer Research.

Inferring Property Selection Pressure from Positional Residue Conservation

Judith Klein-Seetharaman, Rose Hoberman, Roni Rosenfeld, 2004, Applied bioinformatics.

Towards personalised molecular feedback for weight loss

Judith Klein-Seetharaman, Joan Planas-Iglesias, Vijayalaxmi Manoharan, 2019, BMC Obesity.

The optimal fraction of hydrophobic residues required to ensure protein collapse.

Judith Klein-Seetharaman, Jiangbo Miao, Hagai Meirovitch, 2004, Journal of molecular biology.

Comparing human–Salmonella with plant–Salmonella protein–protein interaction predictions

Judith Klein-Seetharaman, Meghana Kshirsagar, Sylvia Schleker, 2015, Front. Microbiol..

Carbon Nanotubes: Biodegradation of Single‐Walled Carbon Nanotubes by Eosinophil Peroxidase (Small 16/2013)

Judith Klein-Seetharaman, Bengt Fadeel, Muhammet S. Toprak, 2013 .

Adsorption of surfactant lipids by single-walled carbon nanotubes in mouse lung upon pharyngeal aspiration.

Judith Klein-Seetharaman, Bengt Fadeel, Naveena Yanamala, 2012, ACS nano.

Biodegradation of single-walled carbon nanotubes by eosinophil peroxidase.

Judith Klein-Seetharaman, Bengt Fadeel, Muhammet S. Toprak, 2013, Small.

Dynamics in Rhodopsin

Judith Klein-Seetharaman, J. Klein-Seetharaman, 2002, Chembiochem : a European journal of chemical biology.

The effect of loops on the structural organization of alpha-helical membrane proteins.

Judith Klein-Seetharaman, Oznur Tastan, Hagai Meirovitch, 2009, Biophysical journal.

Mechanistic investigations of horseradish peroxidase-catalyzed degradation of single-walled carbon nanotubes.

Judith Klein-Seetharaman, Alexander Star, Valerian E Kagan, 2009, Journal of the American Chemical Society.