Bhaskar Dutta

发表

AKT-independent signaling downstream of oncogenic PIK3CA mutations in human cancer.

Yiling Lu, Gordon B Mills, Bhaskar Dutta, 2009, Cancer cell.

Kinome siRNA-phosphoproteomic screen identifies networks regulating AKT signaling

Luay Nakhleh, Yiling Lu, Kakajan Komurov, 2011, Oncogene.

Systems biology approaches for discovering biomarkers for traumatic brain injury.

Jaques Reifman, Chenggang Yu, Bhaskar Dutta, 2013, Journal of neurotrauma.

Network representations of immune system complexity

R. Germain, Bhaskar Dutta, N. Subramanian, 2015, Wiley interdisciplinary reviews. Systems biology and medicine.

Network inference and network response identification: moving genome-scale data to the next level of biological discovery.

Diogo F. Veiga, G. Balázsi, Bhaskar Dutta, 2010, Molecular bioSystems.

Time-Series Transcriptomic Analysis of a Systematically Perturbed Arabidopsis thaliana Liquid Culture System: A Systems Biology Perspective

Bhaskar Dutta, 2007 .

Systematic Investigation of Multi-TLR Sensing Identifies Regulators of Sustained Gene Activation in Macrophages.

I. Fraser, Bhaskar Dutta, B. Lin, 2017, Cell systems.

A small sustained increase in NOD1 abundance promotes ligand-independent inflammatory and oncogene transcriptional responses

R. Germain, I. Fraser, Bhaskar Dutta, 2020, Science Signaling.

A sustained small increase in NOD1 expression promotes ligand-independent oncogenic activity

R. Germain, I. Fraser, Bhaskar Dutta, 2019, bioRxiv.

A systems biology strategy to identify molecular mechanisms of action and protein indicators of traumatic brain injury

J. Reifman, A. Wallqvist, J. Feala, 2014, Journal of neuroscience research.

Time‐series integrated “omic” analyses to elucidate short‐term stress‐induced responses in plant liquid cultures

John Quackenbush, Bhaskar Dutta, Maria I Klapa, 2009, Biotechnology and bioengineering.

Time-Series Integrated Metabolomic and Transcriptional Profiling Analyses

John Quackenbush, Bhaskar Dutta, Maria I. Klapa, 2007 .

Comprehensive RNAi-based screening of human and mouse TLR pathways identifies species-specific preferences in signaling protein use

Bhaskar Dutta, Iain D. C. Fraser, I. Fraser, 2016, Science Signaling.

Dual Roles for Ikaros in Regulation of Macrophage Chromatin State and Inflammatory Gene Expression

I. Fraser, M. Sung, G. Hager, 2018, The Journal of Immunology.

3-Phosphoinositide-dependent kinase 1 potentiates upstream lesions on the phosphatidylinositol 3-kinase pathway in breast carcinoma.

Jorma Isola, Gordon B Mills, Mary Beth Terry, 2009, Cancer research.

PDK 1 potentiates upstream lesions on the PI 3 K pathway in breast carcinoma

Chin, Zhao, Jennifer S. Yu, 2009 .

Individual vs. combinatorial effect of elevated CO2 conditions and salinity stress on Arabidopsis thaliana liquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses

Bhaskar Dutta, Maria I. Klapa, Harin Kanani, 2010, BMC Systems Biology.

Tutorial on biological networks

Bhaskar Dutta, Francisco G. Vital-Lopez, Vesna Memisevic, 2012, WIREs Data Mining Knowl. Discov..

PathNet: a tool for pathway analysis using topological information

Jaques Reifman, Anders Wallqvist, Bhaskar Dutta, 2012, Source Code for Biology and Medicine.

Proteome and Secretome Analysis Reveals Differential Post-transcriptional Regulation of Toll-like Receptor Responses

I. Fraser, Bhaskar Dutta, Rachel A. Gottschalk, 2017, Molecular & Cellular Proteomics.

Distinct NF-κB and MAPK Activation Thresholds Uncouple Steady-State Microbe Sensing from Anti-pathogen Inflammatory Responses.

Martin Meier-Schellersheim, Bastian R Angermann, Bhaskar Dutta, 2016, Cell systems.

Genome-wide siRNA screen of genes regulating the LPS-induced NF-κB and TNF-α responses in mouse macrophages.

I. Fraser, Bhaskar Dutta, Ning Li, 2017 .

Abortive Autophagy Induces Endoplasmic Reticulum Stress and Cell Death in Cancer Cells

Jennifer B Dennison, G. Mills, Yiling Lu, 2012, PloS one.

TIME SERIES TRANSCRIPTIONAL PROFILING ANALYSIS OF THE Arabidopsis thaliana USING FULL GENOME DNA MICROARRAY AND METABOLIC INFORMATION

Bhaskar Dutta, 2004 .

IFN-mediated negative feedback supports bacteria class-specific macrophage inflammatory responses

R. Germain, I. Fraser, J. Tsang, 2019, eLife.

Significance analysis of time‐series transcriptomic data: A methodology that enables the identification and further exploration of the differentially expressed genes at each time‐point

Bhaskar Dutta, Maria I Klapa, M. Klapa, 2007, Biotechnology and bioengineering.

Genome-wide siRNA screen of genes regulating the LPS-induced TNF-α response in human macrophages

I. Fraser, Bhaskar Dutta, Ze Wang, 2017, Scientific Data.

An interactive web-based application for Comprehensive Analysis of RNAi-screen Data

Scott E. Martin, Bhaskar Dutta, Ronald N. Germain, 2016, Nature Communications.

IFN-mediated negative feedback supports bacteria class-specific macrophage inflammatory responses

R. Germain, I. Fraser, J. Tsang, 2019, eLife.