Huan Zhang

发表

Mitogen-Activated Protein Kinase in Pfiesteria piscicida and Its Growth Rate-Related Expression

Senjie Lin, Huan Zhang, 2003, Applied and Environmental Microbiology.

Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates

Huan Zhang, S. Yokoyama, T. Tada, 2008, Proceedings of the National Academy of Sciences.

Nuclear Gene Transformation in the Dinoflagellate Oxyrrhis marina

Senjie Lin, Huan Zhang, Brittany N. Sprecher, 2020, Microorganisms.

Isolation and Characterization of Proliferating Cell Nuclear Antigen from the Dinoflagellate Pfiesteria piscicida

Senjie Lin, Huan Zhang, Yubo Hou, 2006, The Journal of eukaryotic microbiology.

Low abundance distribution of Pfiesteria piscicida in Pacific and Western Atlantic as detected by mtDNA-18S rDNA real-time polymerase chain reaction

Senjie Lin, Huan Zhang, A. Dubois, 2006 .

Light-Promoted Rhodopsin Expression and Starvation Survival in the Marine Dinoflagellate Oxyrrhis marina

Senjie Lin, Huan Zhang, Zhiling Guo, 2014, PloS one.

Genome size‐dependent pcna gene copy number in dinoflagellates and molecular evidence of retroposition as a major evolutionary mechanism

Senjie Lin, Huan Zhang, Xinguo Shi, 2018, Journal of phycology.

Myxococcus xanthus as a Model Organism for Peptidoglycan Assembly and Bacterial Morphogenesis

Beiyan Nan, Huan Zhang, S. Venkatesan, 2021, Microorganisms.

FvLcp1, a type-D fungal LysM protein with Chitin-binding domains, is a secreted protein involved in host recognition and fumonisin production in Fusarium verticillioides - maize kernel interaction

Huan Zhang, Tao Yang, W. Shim, 2019, bioRxiv.

Characterizing co-expression networks underpinning maize stalk rot virulence in Fusarium verticillioides through computational subnetwork module analyses

Byung-Jun Yoon, Huan Zhang, W. Shim, 2017, Scientific Reports.

Characterizing co-expression networks underpinning maize stalk rot virulence in Fusarium verticillioides through computational subnetwork module analyses

Byung-Jun Yoon, Huan Zhang, W. Shim, 2017, bioRxiv.

Fusarium verticillioides SNARE protein FvSyn1 harbours two key functional motifs that play selective roles in fungal development and virulence.

Huan Zhang, W. Shim, Huijuan Yan, 2019, Microbiology.

Fusarium verticillioides SNARE protein FvSyn1 harbors two key functional motifs that play selective roles in fungal development and virulence

Huan Zhang, W. Shim, Huijuan Yan, 2019, bioRxiv.

In situ diet of the copepod Calanus sinicus in coastal waters of the South Yellow Sea and the Bohai Sea

Huan Zhang, Hongju Chen, Guangxing Liu, 2017, Acta Oceanologica Sinica.

Metatranscriptome profiling reveals versatile N-nutrient utilization, CO2 limitation, oxidative stress, and active toxin production in an Alexandrium fundyense bloom

L. Hannick, Senjie Lin, Huan Zhang, 2015 .

Life history interactions between the red algae Chondrus crispus (Gigartinales) and Grateloupia turuturu (Halymeniales) in a changing global environment

Senjie Lin, Huan Zhang, G. Kraemer, 2017 .

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

David S. Booth, Anastasios D. Tsaousis, M. Ares, 2020, Nature Methods.

Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology

David S. Booth, Anastasios D. Tsaousis, M. Ares, 2019, bioRxiv.

Serious Overestimation in Quantitative PCR by Circular (Supercoiled) Plasmid Standard: Microalgal pcna as the Model Gene

Senjie Lin, Huan Zhang, Yubo Hou, 2010, PloS one.

De Novo Transcriptomes of a Mixotrophic and a Heterotrophic Ciliate from Marine Plankton

Huan Zhang, L. Santoferrara, G. McManus, 2014, PloS one.

Spliced leader-based analyses reveal the effects of polycyclic aromatic hydrocarbons on gene expression in the copepod Pseudodiaptomus poplesia.

Huan Zhang, Hongju Chen, Guangxing Liu, 2017, Aquatic toxicology.

Spliced leader RNA trans-splicing discovered in copepods

Senjie Lin, Huan Zhang, D. Campbell, 2015, Scientific Reports.

Development of an immunofluorescence technique for detecting Pfiesteria piscicida

E. Carpenter, Senjie Lin, Huan Zhang, 2003 .

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

Huanming Yang, Jun Wang, Shifeng Cheng, 2015, Science.

Establishing rod shape from spherical, peptidoglycan-deficient bacterial spores

Shiwei Zhu, Jun Liu, T. Mignot, 2019, Proceedings of the National Academy of Sciences.

Transcriptome analysis of maize pathogen Fusarium verticillioides revealed FvLcp1, a secreted protein with type-D fungal LysM and chitin-binding domains, that plays important roles in pathogenesis and mycotoxin production.

Huan Zhang, Tao Yang, W. Shim, 2022, Microbiological research.

Signal recognition particle RNA in dinoflagellates and the Perkinsid Perkinsus marinus.

M. A. Rosenblad, Senjie Lin, Huan Zhang, 2013, Protist.

The coordination between penicillin-binding protein 1a (PBP1a) and the hydrolytic peptidase DacB determines the integrity of bacterial cell poles

Beiyan Nan, Huan Zhang, S. Venkatesan, 2022, bioRxiv.

Bait worm packaging as a potential vector of invasive species

Senjie Lin, Huan Zhang, R. Whitlatch, 2011, Biological Invasions.

Dinoflagellate Proton-Pump Rhodopsin Gene in Long Island Sound: Diversity and Spatiotemporal Distribution

Senjie Lin, Huan Zhang, Minglei Ma, 2022, bioRxiv.

Effects of Asian dust input on eukaryotic phytoplankton community structure in the open areas in the Northwestern Pacific Ocean

Huan Zhang, Hongju Chen, Guangxing Liu, 2019, Marine Biology Research.

Two flavodoxin genes in Trichodesmium (Oscillatoriales, Cyanophyceae): Remarkable sequence divergence and possible functional diversification

E. Carpenter, B. Bergman, Senjie Lin, 2009 .

Dinoflagellate spliced leader RNA genes display a variety of sequences and genomic arrangements.

Senjie Lin, Huan Zhang, D. Campbell, 2009, Molecular biology and evolution.

Spliced leader–based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates

J. Gill, Senjie Lin, Huan Zhang, 2010, Proceedings of the National Academy of Sciences.

Development of a Dinoflagellate-Oriented PCR Primer Set Leads to Detection of Picoplanktonic Dinoflagellates from Long Island Sound

D. Bhattacharya, Senjie Lin, Huan Zhang, 2006, Applied and Environmental Microbiology.

Development of a Dinoﬂagellate-Oriented PCR Primer Set Leads to Detection of Picoplanktonic Dinoﬂagellates from Long Island Sound†

D. Bhattacharya, Senjie Lin, Huan Zhang, 2006 .

Nuclear gene transformation in a dinoflagellate

Senjie Lin, Huan Zhang, Brittany N. Sprecher, 2019, bioRxiv.

Metagenome sequencing and 768 microbial genomes from cold seep in South China Sea

Huan Zhang, Hao Chen, Minxiao Wang, 2022, Scientific data.

Proof that dinoflagellate spliced leader (DinoSL) is a useful hook for fishing dinoflagellate transcripts from mixed microbial samples: Symbiodinium kawagutii as a case study.

J. Gill, Senjie Lin, Huan Zhang, 2013, Protist.

Cyclin B gene and its cell cycle-dependent differential expression in the toxic dinoflagellate Alexandrium fundyense Atama Group I/Clade I

Senjie Lin, Huan Zhang, Yunyun Zhuang, 2013 .

Apical Groove Type and Molecular Phylogeny Suggests Reclassification of Cochlodinium geminatum as Polykrikos geminatum

Senjie Lin, Huan Zhang, Liangmin Huang, 2013, PloS one.

Geographic distribution of Karlodinium veneficum in the US east coast as detected by ITS-ferredoxin real-time PCR assay

Senjie Lin, Huan Zhang, M. Vandersea, 2008 .

A Rab GTPase protein FvSec4 is necessary for fumonisin B1 biosynthesis and virulence in Fusarium verticillioides

Huan Zhang, W. Shim, Huijuan Yan, 2019, Current Genetics.

Effect of Inorganic and Organic Ligands on the Bioavailability of Methylmercury as Determined by Using a mer-lux Bioreporter

P. Visscher, Senjie Lin, Huan Zhang, 2012, Applied and Environmental Microbiology.

Bioreporter mer-lux Determined by Using a the Bioavailability of Methylmercury as Effect of Inorganic and Organic Ligands on

P. Visscher, Senjie Lin, Huan Zhang, 2012 .

Isolation of freshwater and deep-sea type opsin genes from the common Japanese conger

Huan Zhang, N. Okamoto, K. Futami, 2002 .

Bait worm packaging as a potential vector of invasive species

Senjie Lin, Huan Zhang, R. Whitlatch, 2012, Biological Invasions.

A Point Mutation of Magnesium Chelatase OsCHLI Gene Dampens the Interaction Between CHLI and CHLD Subunits in Rice

Huan Zhang, Ling Jiang, J. Wan, 2015, Plant Molecular Biology Reporter.

Needle morphological evidence of the homoploid hybrid origin of Pinus densata based on analysis of artificial hybrids and the putative parents, Pinus tabuliformis and Pinus yunnanensis

H. Liu, Wei Zhao, Huan Zhang, 2014, Ecology and evolution.

Tandem Repeats, High Copy Number and Remarkable Diel Expression Rhythm of Form II RuBisCO in Prorocentrum donghaiense (Dinophyceae)

Senjie Lin, Huan Zhang, Xinguo Shi, 2013, PloS one.

RNA Editing in Dinoflagellates and its Implications for the Evolutionary History of the Editing Machinery

Senjie Lin, Huan Zhang, M. Gray, 2007 .

Molecular Cloning of Carp Cellular myc (c-myc) cDNA

Huan Zhang, N. Okamoto, Naoyuki Yamamoto, 1993 .

Enhancement of cell growth and glycolic acid production by overexpression of membrane-bound alcohol dehydrogenase in Gluconobacter oxydans DSM 2003.

Huan Zhang, D. Wei, Jinping Lin, 2016, Journal of biotechnology.

Prevalent Ciliate Symbiosis on Copepods: High Genetic Diversity and Wide Distribution Detected Using Small Subunit Ribosomal RNA Gene

Senjie Lin, Huan Zhang, Tao Li, 2012, PloS one.

Mitochondrial Cytochrome b mRNA Editing in Dinoflagellates: Possible Ecological and Evolutionary Associations?

Senjie Lin, Huan Zhang, 2005, The Journal of eukaryotic microbiology.

Preferential synthesis of very long chain polyunsaturated fatty acids in eutreptiella sp. (eugelnozoa) revealed by chromatographic and transcriptomic analyses

L. Hannick, Senjie Lin, Huan Zhang, 2020, bioRxiv.

Identification of a novel promoter gHp0169 for gene expression in Gluconobacter oxydans.

Huan Zhang, D. Wei, Kefei Li, 2014, Journal of biotechnology.

Effective improvement of the activity of membrane-bound alcohol dehydrogenase by overexpression of adhS in Gluconobacter oxydans

Huan Zhang, D. Wei, Jinping Lin, 2016, Biotechnology Letters.

A Three-Gene Dinoflagellate Phylogeny Suggests Monophyly of Prorocentrales and a Basal Position for Amphidinium and Heterocapsa

Debashish Bhattacharya, D. Bhattacharya, Senjie Lin, 2007, Journal of Molecular Evolution.

Development of a cob-18S rRNA Gene Real-Time PCR Assay for Quantifying Pfiesteria shumwayae in the Natural Environment

Senjie Lin, Huan Zhang, 2005, Applied and Environmental Microbiology.

PHYLOGENY OF DINOFLAGELLATES BASED ON MITOCHONDRIAL CYTOCHROME B AND NUCLEAR SMALL SUBUNIT RDNA SEQUENCE COMPARISONS 1

D. Bhattacharya, Senjie Lin, Huan Zhang, 2005 .

Detection and Quantification of Pfiesteria piscicida by Using the Mitochondrial Cytochrome b Gene

Senjie Lin, Huan Zhang, 2002, Applied and Environmental Microbiology.

PhnW-PhnX Pathway in Dinoflagellates Not Functional to Utilize Extracellular Phosphonates

Senjie Lin, Huan Zhang, Xin Lin, 2016, Front. Mar. Sci..

Characterization and analysis of ribosomal proteins in two marine calanoid copepods

Huan Zhang, Hongju Chen, Guangxing Liu, 2016, Chinese Journal of Oceanology and Limnology.

CRISPR-Cas12a-mediated gene deletion and regulation in Clostridium ljungdahlii and its application in carbon flux redirection in synthesis gas fermentation.

Yang Gu, Weihong Jiang, Huan Zhang, 2019, ACS synthetic biology.

Molecular cloning and RNA interference analysis of β-N-acetylglucosaminidase in Mamestra brassicae L.

Huan Zhang, K. Zhao, Dong Fan, 2016 .

Spliced Leader RNAs, Mitochondrial Gene Frameshifts and Multi-Protein Phylogeny Expand Support for the Genus Perkinsus as a Unique Group of Alveolates

Senjie Lin, Huan Zhang, D. Campbell, 2011, PloS one.

Introns, alternative splicing, spliced leader trans-splicing and differential expression of pcna and cyclin in Perkinsus marinus.

Senjie Lin, Huan Zhang, C. Dungan, 2011, Protist.

Transcriptomic and isotopic data reveal central role of ammonium in facilitating the growth of the mixotrophic dinoflagellate, Dinophysis acuminata.

C. Gobler, Senjie Lin, Huan Zhang, 2021, Harmful algae.

Decline in non-native freshwater eels in Japan: ecology and future perspectives

K. Tsukamoto, Huan Zhang, A. Kotake, 2008, Environmental Biology of Fishes.

Abundant synthesis of long‐chain polyunsaturated fatty acids in Eutreptiella sp. (Euglenozoa) revealed by chromatographic and transcriptomic analyses

L. Hannick, Senjie Lin, Huan Zhang, 2020, Journal of phycology.

Alkaline phosphatase gene sequence characteristics and transcriptional regulation by phosphate limitation in Karenia brevis (Dinophyceae)

Senjie Lin, Huan Zhang, Bangqin Huang, 2012 .

A novel mutation from gene splicing of a voltage-gated sodium channel in a marine copepod and its potential effect on channel function

H. Dam, Senjie Lin, Huan Zhang, 2015 .

Marine planktonic ciliates that prey on macroalgae and enslave their chloroplasts

Senjie Lin, Huan Zhang, G. McManus, 2004 .

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

David S. Booth, Anastasios D. Tsaousis, M. Ares, 2020, Nature Methods.

Spliced leader RNA trans-splicing in dinoflagellates

T. Gaasterland, Senjie Lin, Huan Zhang, 2007, Proceedings of the National Academy of Sciences.

Transcriptomic Responses to Thermal Stress and Varied Phosphorus Conditions in Fugacium kawagutii

Senjie Lin, Huan Zhang, Liying Yu, 2019, Microorganisms.

Transcriptomic responses to thermal stress and varied phosphorus conditions in Symbiodinium kawagutii

Senjie Lin, Huan Zhang, Liying Yu, 2018, bioRxiv.

Phosphorus deficiency affects multiple macromolecular biosynthesis pathways of Thalassiosira weissflogii

Huan Zhang, Bangqin Huang, Xiu-Juan Wang, 2014, Acta Oceanologica Sinica.

High Sequence Variability, Diverse Subcellular Localizations, and Ecological Implications of Alkaline Phosphatase in Dinoflagellates and Other Eukaryotic Phytoplankton

Senjie Lin, Huan Zhang, Xin Lin, 2012, Front. Microbio..

Alkaline Phosphatase Gene Sequence And Transcriptional Regulation By Phosphate Limitation In Amphidinium Carterae (Dinophyceae) 1

Senjie Lin, Huan Zhang, Bangqin Huang, 2011, Journal of phycology.

Genetic conspecificity of the worldwide populations of Didemnum vexillum Kott, 2002.

Senjie Lin, Huan Zhang, R. Whitlatch, 2009 .

Transcriptomic Study Reveals Widespread Spliced Leader Trans-Splicing, Short 5′-UTRs and Potential Complex Carbon Fixation Mechanisms in the Euglenoid Alga Eutreptiella sp.

L. Hannick, Senjie Lin, Huan Zhang, 2013, PloS one.

The PsbO homolog from Symbiodiniumkawagutii (Dinophyceae) characterized using biochemical and molecular methods

P. Thomé, Senjie Lin, Huan Zhang, 2013, Photosynthesis Research.

Polyadenylation of 18S rRNA in algae1

Senjie Lin, Huan Zhang, Yunyun Zhuang, 2013, Journal of phycology.

Fsr1, a striatin homologue, forms an endomembrane-associated complex that regulates virulence in the maize pathogen Fusarium verticillioides.

Huan Zhang, W. Shim, M. Mukherjee, 2018, Molecular plant pathology.

Phylogenetic analysis guided by intragenomic SSU rDNA polymorphism refines classification of “Alexandrium tamarense” species complex

Senjie Lin, Huan Zhang, Yunyun Zhuang, 2012 .

COMPLEX GENE STRUCTURE OF THE FORM II RUBISCO IN THE DINOFLAGELLATE PROROCENTRUM MINIMUM (DINOPHYCEAE) 1

Senjie Lin, Huan Zhang, 2003 .

Characterizing co-expression networks underpinning maize stalk rot virulence in Fusarium verticillioides through computational subnetwork module analyses

Byung-Jun Yoon, Huan Zhang, W. Shim, 2017, bioRxiv.

Metatranscriptome Profiling Indicates Size-Dependent Differentiation in Plastic and Conserved Community Traits and Functional Diversification in Dinoflagellate Communities

Senjie Lin, Huan Zhang, U. John, 2018, Front. Mar. Sci..

A Rab GTPase protein FvSec4 is necessary for fumonisin B1 biosynthesis and virulence in Fusarium verticillioides

Huan Zhang, W. Shim, Huijuan Yan, 2019, bioRxiv.

Metabarcoding Analysis of Pollen Species Foraged by Osmia excavata Alfken (Hymenoptera: Megachilidae) in China

Zeyang Zhou, Chaodong Zhu, Huan Zhang, 2021, Frontiers in Ecology and Evolution.

Enhancement of Non-photochemical Quenching as an Adaptive Strategy under Phosphorus Deprivation in the Dinoflagellate Karlodinium veneficum

Senjie Lin, Huan Zhang, Yudong Cui, 2017, Front. Microbiol..

Biology of the Marine Heterotrophic Dinoflagellate Oxyrrhis marina: Current Status and Future Directions

Senjie Lin, Huan Zhang, Zhiling Guo, 2013, Microorganisms.

Determining the native region of the putatively invasive ascidian Didemnum vexillum Kott, 2002

K. Holsinger, Senjie Lin, Huan Zhang, 2012 .

DNA barcoding species in Alexandrium tamarense complex using ITS and proposing designation of five species.

Senjie Lin, Huan Zhang, Xin Lin, 2014, Harmful algae.

Utilization of urea and expression profiles of related genes in the dinoflagellate Prorocentrum donghaiense

Senjie Lin, Huan Zhang, Zhigang Yu, 2017, PloS one.

Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates.

Senjie Lin, Huan Zhang, D. Spencer, 2002, Journal of molecular biology.

Diversity, prevalence, and expression of cyanase genes (cynS) in planktonic marine microorganisms

Huan Zhang, T. Mock, C. van Oosterhout, 2021, The ISME journal.

The Small RNA sr8384 Is a Crucial Regulator of Cell Growth in Solventogenic Clostridia

Yang Gu, Weihong Jiang, Huan Zhang, 2020, Applied and Environmental Microbiology.

The small noncoding RNA sr8384 determines solvent synthesis and cell growth in industrial solventogenic clostridia

Yang Gu, Weihong Jiang, Huan Zhang, 2019, bioRxiv.

The small noncoding RNA sr 8384 determines solvent synthesis and 1 cell growth in industrial solventogenic clostridia 2 Running title : Functional sncRNA in solventogenic clostridia

Yang Gu, Weihong Jiang, Huan Zhang, 2019 .

High-Level Diversity of Dinoflagellates in the Natural Environment, Revealed by Assessment of Mitochondrial cox1 and cob Genes for Dinoflagellate DNA Barcoding

Yubo Hou, Senjie Lin, Huan Zhang, 2008, Applied and Environmental Microbiology.

mRNA EDITING AND SPLICED‐LEADER RNA TRANS‐SPLICING GROUPS OXYRRHIS, NOCTILUCA, HETEROCAPSA, AND AMPHIDINIUM AS BASAL LINEAGES OF DINOFLAGELLATES 1

Senjie Lin, Huan Zhang, 2008, Journal of phycology.

Molecular phylogeny of the spiny‐surfaced species of the dinoflagellate Prorocentrum with the description of P. thermophilum sp. nov. and P. criophilum sp. nov. (Prorocentrales, Dinophyceae)

L. Artigas, Senjie Lin, Huan Zhang, 2022, Journal of phycology.

Mitochondrial cob and cox1 Genes and Editing of the Corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with Special Reference to the Phylogenetic Position of the Genus Dinophysis

Lucie Maranda, D. Bhattacharya, Senjie Lin, 2007, Applied and Environmental Microbiology.

POTENTIAL UTILITY OF MITOCHONDRIAL CYTOCHROME B AND ITS MRNA EDITING IN RESOLVING CLOSELY RELATED DINOFLAGELLATES: A CASE STUDY OF PROROCENTRUM (DINOPHYCEAE) 1

N. Jiao, Senjie Lin, Huan Zhang, 2006 .

INTENSE GRAZING AND PREY‐DEPENDENT GROWTH OF PFIESTERIA PISCICIDA (DINOPHYCEAE) 1

E. Carpenter, Senjie Lin, Huan Zhang, 2004 .

An improved method for achieving high-quality RNA for copepod transcriptomic studies

H. Dam, Senjie Lin, Huan Zhang, 2013 .

Functional dissection and modulation of the BirA protein for improved autotrophic growth of gas‐fermenting Clostridium ljungdahlii

Yang Gu, Weihong Jiang, Huan Zhang, 2021, Microbial biotechnology.

Identification and Characterization of Pathogenic and Endophytic Fungal Species Associated with Pokkah Boeng Disease of Sugarcane

Huan Zhang, W. Shim, Wenying Yu, 2017, The plant pathology journal.

The PsbO homolog from Symbiodiniumkawagutii (Dinophyceae) characterized using biochemical and molecular methods

P. Thomé, Senjie Lin, Huan Zhang, 2013, Photosynthesis Research.

ISOLATION OF MITOCHONDRIAL CYTOCHROME B GENE AND DEVELOPMENT OF A REAL-TIME QUANTITATIVE PCR ASSAY FOR DETECTING NEOPARAMOEBA AESTUARINA

Senjie Lin, Huan Zhang, 2009 .

Computational Prediction of Pathogenic Network Modules in Fusarium verticillioides

Huan Zhang, Byung-Jun Yoon, Won-Bo Shim, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Dinoflagellate spliced leader RNA genes display a variety of sequences and genomic arrangements.

Senjie Lin, Huan Zhang, D. Campbell, 2009, Molecular biology and evolution.

Computational identification of genetic subnetwork modules associated with maize defense response to Fusarium verticillioides

Byung-Jun Yoon, Won-Bo Shim, Mansuck Kim, 2015, BMC Bioinformatics.

High-Level Diversity of Dinoflagellates in the Natural Environment, Revealed by Assessment of Mitochondrial cox1 and cob Genes for Dinoflagellate DNA Barcoding

Senjie Lin, Huan Zhang, Yubo Hou, 2008, Applied and Environmental Microbiology.

Functional divergence of duplicated c-myc genes in a tetraploid fish, the common carp (Cyprinus carpio).

Huan Zhang, N. Okamoto, K. Futami, 2005, Gene.