F. Levander

发表

Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas

Fredrik Levander, Oscar Persson, Morten Krogh, 2009, Proteomics. Clinical applications.

An Adaptive Alignment Algorithm for Quality-controlled Label-free LC-MS*

F. Levander, E. Andreasson, M. Sandín, 2012, Molecular & Cellular Proteomics.

Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach

Deborah A. Weighill, P. Hedley, D. Burra, 2014, BMC Genomics.

Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions

P. Hedley, M. Lenman, F. Levander, 2014, BMC Genomics.

Automated methods for improved protein identification by peptide mass fingerprinting

Thorsteinn S. Rögnvaldsson, F. Levander, P. James, 2004, Proteomics.

Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans

P. Hedley, Jenny Morris, D. Burra, 2014, BMC Plant Biology.

Parallel antibody germline gene and haplotype analyses support the validity of immunoglobulin germline gene inference and discovery

Fredrik Levander, Ufuk Kirik, Mats Ohlin, 2017, Molecular immunology.

Proteome of the Nematode-Trapping Cells of the Fungus Monacrosporium haptotylum

D. Ahrén, F. Levander, A. Tunlid, 2013, Applied and Environmental Microbiology.

An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations.

A. Chawade, F. Levander, M. Lindstedt, 2020, Journal of proteomics.

Getting a grip on proteomics data – Proteomics Data Collection (ProDaC)

Lennart Martens, Harald Barsnes, Martin Eisenacher, 2009, Proteomics.

Human Proteinpedia enables sharing of human protein data

Y. L. Ramachandra, Christine A. Miller, J. Bader, 2008, Nature Biotechnology.

Multimodel pathway enrichment methods for functional evaluation of expression regulation.

F. Levander, A. Heyden, M. Lindstedt, 2012, Journal of proteome research.

Proteomic Analysis of Phytophthora infestans Reveals the Importance of Cell Wall Proteins in Pathogenicity*

F. Govers, F. Levander, L. Grenville-Briggs, 2017, Molecular & Cellular Proteomics.

Development of reagents for differential protein quantitation by subtractive parent (precursor) ion scanning.

P. Busson, F. Levander, G. Arrigoni, 2007, Journal of proteome research.

Physiological Role of β-Phosphoglucomutase inLactococcus lactis

F. Levander, P. Rådström, U. Andersson, 2001, Applied and Environmental Microbiology.

Trehalose-6-phosphate Phosphorylase Is Part of a Novel Metabolic Pathway for Trehalose Utilization in Lactococcus lactis *

F. Levander, P. Rådström, U. Andersson, 2001, The Journal of Biological Chemistry.

Targeted Proteomics Approach for Precision Plant Breeding.

Fredrik Levander, Aakash Chawade, Erik Alexandersson, 2016, Journal of proteome research.

Proteomics of PTI and Two ETI Immune Reactions in Potato Leaves

M. Lenman, D. Burra, F. Levander, 2019, International journal of molecular sciences.

Comparative Membrane-Associated Proteomics of Three Different Immune Reactions in Potato

M. Lenman, D. Burra, F. Levander, 2018, International journal of molecular sciences.

Hunting for protein markers of hypoxia by combining plasma membrane enrichment with a new approach to membrane protein analysis.

E. Fredlund, F. Levander, Morten Krogh, 2011, Journal of proteome research.

Tutorial on protein fingerprinting

F. Levander, 2006 .

Chapter 9 Mass spectrometry for protein identification

F. Levander, P. James, 2005 .

Comparative proteomic analysis of hyphae and germinating cysts of Phytophthora pisi and Phytophthora sojae.

F. Levander, M. Karlsson, E. Andreasson, 2015, Journal of proteomics.

A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients.

F. Levander, P. Nanni, P. James, 2009, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

Laboratory data and sample management for proteomics.

J. Häkkinen, F. Levander, 2011, Methods in molecular biology.

Physiological role of beta-phosphoglucomutase in Lactococcus lactis.

F. Levander, P. Rådström, U. Andersson, 2001, Applied and environmental microbiology.

A Breast Cell Atlas: Organelle analysis of the MDA-MB-231 cell line by density-gradient fractionation using isotopic marking and label-free analysis

F. Levander, P. James, M. Sandín, 2015 .

NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling

F. Levander, Hengning Ke, R. Massoumi, 2017, Molecular biology of the cell.

Chemical derivatization of phosphoserine and phosphothreonine containing peptides to increase sensitivity for MALDI‐based analysis and for selectivity of MS/MS analysis

M. Quadroni, E. Degerman, F. Levander, 2006, Proteomics.

Abbreviations: ROS, reactive oxygen species; HR, hypersensitive response; PR, pathogenesis-related; SAR, systemic acquired resistance; rAUPDC, relative area under disease progression curve; DAB, 3,3- Diaminobenzidine; cpr, constitutive expressor of PR proteins; hpi, hours post infection; dpi, days p

M. Lenman, F. Levander, E. Andreasson, 2012 .

In Vitro Evolution of Antibodies Inspired by In Vivo Evolution

F. Levander, H. Persson, M. Ohlin, 2018, Front. Immunol..

Plasma proteome profiling of healthy individuals across the life span in a Sicilian cohort with long‐lived individuals

C. Caruso, F. Levander, S. Vasto, 2022, Aging cell.

Proteomic changes after fertilization and before first cleavage in rainbow trout Oncorhynchus mykiss

F. Levander, P. James, A. Kouba, 2020 .

Interactive proteogenomic exploration of response to Fusarium head blight in oat varieties with different resistance.

O. Olsson, A. Chawade, F. Levander, 2020, Journal of proteomics.

Physiological Role of (cid:2) -Phosphoglucomutase in Lactococcus lactis

F. Levander, P. Rådström, U. Andersson, 2001 .

Choice of High-Throughput Proteomics Method Affects Data Integration with Transcriptomics and the Potential Use in Biomarker Discovery

J. Vallon-Christersson, L. Rydén, F. Levander, 2022, Cancers.

Adjuvants in fungicide formulations can be skin sensitizers and cause different types of cell stress responses

F. Levander, M. Lindstedt, R. D. de Ávila, 2022, Toxicology reports.

A proteomics dataset capturing myeloid cell responses upon cellular exposure to fungicides, adjuvants and fungicide formulations

F. Levander, M. Lindstedt, R. D. de Ávila, 2023, Data in brief.

Shaping our food – an overview of crop and livestock breeding

P. Sandin, Li-Hua Zhu, F. Levander, 2014 .

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

Martin Eisenacher, Juan Antonio Vizcaíno, Henning Hermjakob, 2013, Database J. Biol. Databases Curation.

mzML—a Community Standard for Mass Spectrometry Data*

Lennart Martens, Henning Hermjakob, Fredrik Levander, 2010, Molecular & Cellular Proteomics.

Stable bull fertility protein markers in seminal plasma.

D. de Koning, F. Levander, J. Morrell, 2021, Journal of proteomics.

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons

Fredrik Levander, Jakob Willforss, Valentina Siino, 2020, bioRxiv.

Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets

A. Chawade, F. Levander, Erik Alexandersson, 2014, Journal of proteome research.

Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML

K. Stegmaier, M. Hemann, Å. Borg, 2015, Oncogene.

Patient-Derived Xenograft Models Reveal Intratumor Heterogeneity and Temporal Stability in Neuroblastoma.

J. Karlsson, D. Gisselsson, D. Lindgren, 2018, Cancer research.

Title : Patient-derived xenograft models reveal intratumor heterogeneity and temporal stability in neuroblastoma Running title : Intratumor heterogeneity in neuroblastoma

Noguera, J. Karlsson, D. Gisselsson, 2018 .

Requirement for Phosphoglucomutase in Exopolysaccharide Biosynthesis in Glucose- and Lactose-Utilizing Streptococcus thermophilus

F. Levander, P. Rådström, 2001, Applied and Environmental Microbiology.

A community proposal to integrate proteomics activities in ELIXIR

Lennart Martens, Martin Eisenacher, Wout Bittremieux, 2017, F1000Research.

NormalyzerDE: Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis.

Fredrik Levander, Aakash Chawade, Jakob Willforss, 2018, Journal of proteome research.

Data processing methods and quality control strategies for label-free LC-MS protein quantification.

Fredrik Levander, Johan Teleman, Johan Malmström, 2014, Biochimica et biophysica acta.

Pathway-centric analysis of the DNA damage response to chemotherapeutic agents in two breast cell lines

F. Levander, P. James, P. Cifani, 2015 .

Leaf Apoplast of Field-Grown Potato Analyzed by Quantitative Proteomics and Activity-Based Protein Profiling

M. Kaiser, F. Levander, E. Andreasson, 2021, International journal of molecular sciences.

Proteome of the Nematode-Trapping Cells of the Fungus Monacrosporium haptotylum

D. Ahrén, F. Levander, A. Tunlid, 2013 .

Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification

Fredrik Levander, Johan Teleman, Peter James, 2012, Journal of proteome research.

Critical comparison of multidimensional separation methods for increasing protein expression coverage.

Fredrik Levander, Peter James, Paolo Cifani, 2012, Journal of proteome research.

The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

Fredrik Levander, Jari Häkkinen, Kristofer Wårell, 2009, Journal of proteome research.

Quantitative label-free phosphoproteomics of six different life stages of the late blight pathogen Phytophthora infestans reveals abundant phosphorylation of members of the CRN effector family.

Fredrik Levander, Berend Snel, Svante Resjö, 2014, Journal of proteome research.

Dinosaur: A Refined Open-Source Peptide MS Feature Detector

Fredrik Levander, Johan Teleman, Aakash Chawade, 2016, Journal of proteome research.

DIANA - algorithmic improvements for analysis of data-independent acquisition MS data

Lars Malmström, Fredrik Levander, Johan Teleman, 2015, Bioinform..

Numerical Compression Schemes for Proteomics Mass Spectrometry Data*

Lars Malmström, Fredrik Levander, Johan Teleman, 2014, Molecular & Cellular Proteomics.

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists*

Lennart Martens, Fredrik Levander, Matthew Chambers, 2011, Molecular & Cellular Proteomics.

Antibody Heavy Chain Variable Domains of Different Germline Gene Origins Diversify through Different Paths

F. Levander, H. Persson, M. Ohlin, 2017, Front. Immunol..

Towards a standardized bioinformatics infrastructure for N- and O-glycomics

Oliver Horlacher, Kiyoko F. Aoki-Kinoshita, Fredrik Levander, 2019, Nature Communications.

Is label‐free LC‐MS/MS ready for biomarker discovery?

Fredrik Levander, Aakash Chawade, Marianne Sandin, 2015, Proteomics. Clinical applications.

Automated quality control system for LC-SRM setups.

Fredrik Levander, Johan Teleman, Sofia Waldemarson, 2013, Journal of proteomics.

Generic workflow for quality assessment of quantitative label‐free LC‐MS analysis

Karin Hansson, Fredrik Levander, Morten Krogh, 2011, Proteomics.

Starch-hydrolyzing bacteria from Ethiopian soda lakes

W. Al-Soud, F. Levander, R. Hatti-Kaul, 2001, Extremophiles.

Proteome analysis of the xylose‐fermenting mutant yeast strain TMB 3400

B. Hahn-Hägerdal, M. Gorwa-Grauslund, A. Påhlman, 2009, Yeast.

Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose

B. Hahn-Hägerdal, F. Levander, P. James, 2004, Proteomics.

High-Resolution Proteomic Profiling Shows Sexual Dimorphism in Zebrafish Heart-Associated Proteins.

F. Levander, H. Niksirat, C. Steinbach, 2021, Journal of proteome research.

Quantification of membrane proteins using nonspecific protease digestions.

Salvatore Cappadona, F. Levander, G. Arrigoni, 2009, Journal of proteome research.

Exopolysaccharide‐producing strains of thermophilic lactic acid bacteria cluster into groups according to their EPS structure

F. Levander, L. De Vuyst, M. Elvin, 2001, Letters in Applied Microbiology.

Enhanced Exopolysaccharide Production by Metabolic Engineering of Streptococcus thermophilus

F. Levander, P. Rådström, M. Svensson, 2002, Applied and Environmental Microbiology.

Small-scale analysis of exopolysaccharides from Streptococcus thermophilus grown in a semi-defined medium

F. Levander, P. Rådström, M. Svensson, 2001, BMC Microbiology.

Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010.

Fredrik Levander, Jürgen Cox, Eugene Kolker, 2011, Journal of proteomics.

e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines

Oliver Horlacher, Kiyoko F. Aoki-Kinoshita, Fredrik Levander, 2018, bioRxiv.

Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans

P. Hedley, D. Burra, F. Levander, 2014, BMC Plant Biology.

Automated reporting from gel‐based proteomics experiments using the open source Proteios database application

Fredrik Levander, Peter James, Jari Häkkinen, 2007, Proteomics.

BEX1 acts as a tumor suppressor in acute myeloid leukemia

L. Rönnstrand, Hui Zhao, F. Levander, 2015, Oncotarget.

BEX 1 acts as a tumor suppressor in acute myeloid leukemia

L. Rönnstrand, Hui Zhao, F. Levander, 2015 .

The protein expression of Streptococcus pyogenes is significantly influenced by human plasma.

L. Björck, B. Johansson, F. Levander, 2005, Journal of proteome research.

Data processing has major impact on the outcome of quantitative label-free LC-MS analysis.

Marianne Sandin, Fredrik Levander, Johan Teleman, 2015, Journal of proteome research.

Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE.

Fredrik Levander, Mats Ohlin, F. Levander, 2017, The Journal of allergy and clinical immunology.

Differential proteomic analysis of HT29 Cl.16E and intestinal epithelial cells by LC ESI/QTOF mass spectrometry.

F. Levander, P. Nanni, P. James, 2009, Journal of proteomics.

Quantification of proteomic profile changes in the hemolymph of crayfish during in vitro coagulation.

F. Levander, H. Niksirat, P. Kozák, 2023, Developmental and comparative immunology.

Relative quantification of membrane proteins in wild-type and prion protein (PrP)-knockout cerebellar granule neurons.

F. Levander, P. James, K. Hansson, 2012, Journal of proteome research.

Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching.

F. Levander, P. James, K. Wårell, 2008, Journal of proteome research.

Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting

Fredrik Levander, Thorsteinn S. Rögnvaldsson, Daniel Dalevi, 2004, Bioinform..

Relative quantification of membrane proteins in wild-type and prion protein (PrP)-knockout cerebellar granule neurons.

F. Levander, P. James, K. Hansson, 2012, Journal of proteome research.

An mTRAN-mRNA interaction mediates mitochondrial translation initiation in plants

V. Brunaud, F. Levander, A. Rasmusson, 2023, Science.

Improved Label-Free LC-MS Analysis by Wavelet-Based Noise Rejection

Piera Versura, Fredrik Levander, Sergio Cerutti, 2010, Journal of biomedicine & biotechnology.