Julien Dorier

发表

Additional file 3: of Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method

Ioannis Xenarios, Martin Ebeling, Julien Dorier, 2016 .

Generation of Molecular Models and Pathways

Alan Bridge, Ioannis Xenarios, Julien Dorier, 2018 .

Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method

Ioannis Xenarios, Martin Ebeling, Julien Dorier, 2016, BMC Bioinformatics.

Additional file 5: of Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method

Ioannis Xenarios, Martin Ebeling, Julien Dorier, 2016 .

Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids

Julien Dorier, Andrzej Stasiak, Fabrizio Benedetti, 2018, Bioinform..

Reversed dynamics to uncover basins of attraction of asynchronous logical models

Aurélien Naldi, Claudine Chaouiya, Elisabeth Remy, 2017 .

KnotProt 2.0: a database of proteins with knots and other entangled structures

Eric J. Rawdon, Pawel Dabrowski-Tumanski, Joanna I. Sulkowska, 2018, Nucleic Acids Res..

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

Steffen Klamt, Aurélien Naldi, Denis Thieffry, 2013, BMC Systems Biology.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Oliver Horlacher, Damian Szklarczyk, Christian von Mering, 2015, Nucleic Acids Res..

Additional file 2: of Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method

Ioannis Xenarios, Martin Ebeling, Julien Dorier, 2016 .

Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation

Alan Bridge, Ioannis Xenarios, Julien Dorier, 2018, Database J. Biol. Databases Curation.

Introducing Supercoiling into Models of Chromosome Structure

Julien Dorier, Andrzej Stasiak, Fabrizio Benedetti, 2019 .

Efficient computation of minimal perturbation sets in gene regulatory networks

Ioannis Xenarios, Kartik Mohanram, Julien Dorier, 2013, Front. Physiol..

The role of transcription factories-mediated interchromosomal contacts in the organization of nuclear architecture

Julien Dorier, Andrzej Stasiak, A. Stasiak, 2010, Nucleic acids research.

Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes

Julien Dorier, Fabrizio Benedetti, Andrzej Stasiak, 2013, Nucleic acids research.

Topological origins of chromosomal territories

Julien Dorier, Andrzej Stasiak, A. Stasiak, 2009, Nucleic acids research.

Effects of supercoiling on enhancer–promoter contacts

Julien Dorier, Fabrizio Benedetti, Andrzej Stasiak, 2014, Nucleic acids research.

DNA supercoiling inhibits DNA knotting

Julien Dorier, Andrzej Stasiak, A. Stasiak, 2008, Nucleic acids research.

Studies of global and local entanglements of individual protein chains using the concept of knotoids

Julien Dorier, Fabrizio Benedetti, Dimos Goundaroulis, 2017, Scientific Reports.

Topological Models for Open-Knotted Protein Chains Using the Concepts of Knotoids and Bonded Knotoids

Julien Dorier, Sofia Lambropoulou, Dimos Goundaroulis, 2017, Polymers.