P. Spealman

发表

Single-cell copy number variant detection reveals the dynamics and diversity of adaptation

Sasha F. Levy, Sasha F Levy, David Gresham, 2018, bioRxiv.

Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast

Gemma E. May, C. J. McManus, P. Spealman, 2013, Genome research.

Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data

Armaghan W. Naik, S. Kuersten, R. Murphy, 2018, Genome research.

Differential analysis of prokaryotic 1 communities from pristine mangrove tidal 2 zone sediments reveal distinct structures 3 and functional profiles 4 5

D. Gresham, P. Spealman, F. Chinalia, 2020 .

Bacteria communities and water quality parameters in riverine water and sediments near wastewater discharges

P. Spealman, D. Azulai, G. Perron, 2022, Scientific Data.

Complex Genomic Rearrangements following Selection in a Glutamine-Limited Medium over Hundreds of Generations

D. Gresham, Grace Avecilla, P. Spealman, 2022, Microbiology resource announcements.

Inverted duplicate DNA sequences increase translocation rates through sequencing nanopores resulting in reduced base calling accuracy

D. Gresham, P. Spealman, Jaden Burrell, 2020, Nucleic acids research.

Nanopore sequencing undergoes catastrophic sequence failure at inverted duplicated DNA sequences

David Gresham, D. Gresham, P. Spealman, 2019, bioRxiv.

Impacts of uORF codon identity and position on translation regulation

Gemma E. May, Yizhu Lin, C. J. McManus, 2019, Nucleic acids research.

Effects of tidal influence on the structure and function of prokaryotic communities in the sediments of a pristine Brazilian mangrove

D. Gresham, P. Spealman, F. Chinalia, 2021 .

Microbial community structure and ecology in sediments of a pristine mangrove forest

P. Spealman, F. Chinalia, V. Melo, 2019 .

Large-scale differences in diversity and functional adaptations of prokaryotic communities from conserved and anthropogenically impacted mangrove sediments in a tropical estuary

D. Gresham, P. Spealman, F. Chinalia, 2021, PeerJ.

Exploring Ribosome Positioning on Translating Transcripts with Ribosome Profiling.

Carl Kingsford, Hao Wang, C Joel McManus, 2016, Methods in molecular biology.

uORF-seqr: A Machine Learning-Based Approach to the Identification of Upstream Open Reading Frames in Yeast.

Armaghan W. Naik, P. Spealman, Joel McManus, 2021, Methods in molecular biology.

Copy number variants alter local and global mutational tolerance

D. Gresham, Grace Avecilla, P. Spealman, 2022, bioRxiv.

Best Practices in Microbial Experimental Evolution: Using Reporters and Long-Read Sequencing to Identify Copy Number Variation in Experimental Evolution

D. Gresham, P. Spealman, Julie N. Chuong, 2023, Journal of Molecular Evolution.

Metagenomes from Soils along an Agricultural Transect in Ulster County, New York

D. Gresham, P. Spealman, G. Perron, 2023, Microbiology resource announcements.

Modifying Reference Sequence and Annotation Files Quickly and Reproducibly with ref orm

D. Gresham, P. Spealman, M. Khalfan, 2021 .

A mobile target

P. Spealman, G. Perron, Carolina Oliveira de Santana, 2023, eLife.

Post-transcriptional mechanisms modulate the consequences of adaptive copy number variation

D. Gresham, P. Spealman, Titir De, 2022 .

Copy number variation alters local and global mutational tolerance

D. Gresham, Grace Avecilla, P. Spealman, 2023, Genome research.

Multilevel gene expression changes in lineages containing adaptive copy number variants

D. Gresham, P. Spealman, Titir De, 2023, bioRxiv.