J. Bundy

发表

Translational Arrest Due to Cytoplasmic Redox Stress Delays Adaptation to Growth on Methanol and Heterologous Protein Expression in a Typical Fed-Batch Culture of Pichia pastoris

Gregory D. Tredwell, D. Leak, Bryn Edwards-Jones, 2015, PloS one.

Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts

T. Ebbels, J. Lindon, J. Nicholson, 2007, Nature Protocols.

Unique metabolites protect earthworms against plant polyphenols

Manuel Liebeke, P. Kille, J. Bundy, 2015, Nature Communications.

A metabolic signature of long life in Caenorhabditis elegans

A. Leroi, J. Swire, J. Bundy, 2010, BMC Biology.

Analysis of intact bacteria using rapid evaporative ionisation mass spectrometry.

K. Veselkov, J. Bundy, Z. Takáts, 2013, Chemical communications.

Analog nitrogen sensing in Escherichia coli enables high fidelity information processing

M. Stumpf, J. Pinney, M. Bennett, 2015, bioRxiv.

Application of bioluminescence‐based microbial biosensors to the ecotoxicity assessment of organotins

G. Paton, J. Bundy, J. Wardell, 1997 .

The Development of Metabolomic Sampling Procedures for Pichia pastoris, and Baseline Metabolome Data

Gregory D. Tredwell, D. Leak, Bryn Edwards-Jones, 2011, PloS one.

Ion-Pairing Chromatography and Amine Derivatization Provide Complementary Approaches for the Targeted LC-MS Analysis of the Polar Metabolome

E. Want, I. Wilson, J. Bundy, 2021, Journal of proteome research.

Statistical Correlations between NMR Spectroscopy and Direct Infusion FT-ICR Mass Spectrometry Aid Annotation of Unknowns in Metabolomics.

T. Ebbels, M. Viant, Manuel Liebeke, 2016, Analytical chemistry.

Tissue disruption and extraction methods for metabolic profiling of an invertebrate sentinel species

Manuel Liebeke, J. Bundy, 2012, Metabolomics.

Artificial microRNA-mediated knockdown of pyruvate formate lyase (PFL1) provides evidence for an active 3-hydroxybutyrate production pathway in the green alga Chlamydomonas reinhardtii.

G. Tredwell, J. Bundy, A. Molnár, 2012, Journal of biotechnology.

Profiling the metabolic signature of senescence.

A. Leroi, J. Bundy, S. Fuchs, 2013, Methods in molecular biology.

Pseudomonas aeruginosa infection in cystic fibrosis: pathophysiological mechanisms and therapeutic approaches

P. Freemont, S. Faust, J. Bundy, 2016, Expert review of respiratory medicine.

Establishing principal soil quality parameters influencing earthworms in urban soils using bioassays.

J. Bundy, D. Spurgeon, C. Svendsen, 2005, Environmental pollution.

Combined microbial community level and single species biosensor responses to monitor recovery of oil polluted soil

G. Paton, J. Bundy, C. Campbell, 2004 .

Comparison of response of six different luminescent bacterial bioassays to bioremediation of five contrasting oils.

G. Paton, J. Bundy, C. Campbell, 2001, Journal of environmental monitoring : JEM.

Ecological drivers influence the distributions of two cryptic lineages in an earthworm morphospecies

Manuel Liebeke, C. Anderson, P. Kille, 2016 .

Rapid screening of cellular stress responses in recombinant Pichia pastoris strains using metabolite profiling

Gregory D. Tredwell, D. Leak, Bryn Edwards-Jones, 2017, Journal of Industrial Microbiology & Biotechnology.

Visualizing Antimicrobials in Bacterial Biofilms: Three-Dimensional Biochemical Imaging Using TOF-SIMS

S. Diggle, J. Bundy, A. Filloux, 2017, mSphere.

Identification of hydroxyapatite spherules provides new insight into subretinal pigment epithelial deposit formation in the aging eye

M. Ueffing, A. Bird, K. Boldt, 2015, Proceedings of the National Academy of Sciences.

Calm on the surface, dynamic on the inside. Molecular homeostasis in response to regulatory and metabolic perturbation of Anabaena sp. PCC 7120 nitrogen metabolism

Patrik R. Jones, J. Bundy, D. Gaboriau, 2020, bioRxiv.

Outdoor and indoor cadmium distributions near an abandoned smelting works and their relations to human exposure.

James K. Ellis, H. Keun, J. Bundy, 2011, Environmental pollution.

Microsoft Word-gluconate JBC revised final.docx

Manuel Liebeke, J. Bundy, H. Williams, 2013 .

Free glucosylglycerate is a novel marker of nitrogen stress in Mycobacterium smegmatis.

J. Bundy, B. Robertson, K. Williams, 2012, Journal of proteome research.

Earthworm species of the genus Eisenia can be phenotypically differentiated by metabolic profiling

John C Lindon, Jeremy K Nicholson, Claus Svendsen, 2002, FEBS letters.

Ecological drivers influence the distributions of two cryptic lineages in an earthworm morphospecies

Manuel Liebeke, C. Anderson, P. Kille, 2016 .

Calm on the surface, dynamic on the inside. Molecular homeostasis of Anabaena sp. PCC 7120 nitrogen metabolism.

Patrik R. Jones, J. Bundy, D. Gaboriau, 2021, Plant, cell & environment.

The metabolomic responses of Caenorhabditis elegans to cadmium are largely independent of metallothionein status, but dominated by changes in cystathionine and phytochelatins.

E. Want, S. Stürzenbaum, P. Kille, 2009, Journal of proteome research.

Metabolic profile biomarkers of metal contamination in a sentinel terrestrial species are applicable across multiple sites.

P. Kille, H. Keun, J. Bundy, 2007, Environmental science & technology.

Tissue disruption and extraction methods for metabolic profiling of an invertebrate sentinel species

Manuel Liebeke, J. Bundy, M. Liebeke, 2012, Metabolomics.

DNA sequence variation and methylation in an arsenic tolerant earthworm population

M. Hodson, M. Bruford, S. Stürzenbaum, 2013 .

Influence of the Crc regulator on the hierarchical use of carbon sources from a complete medium in Pseudomonas.

F. Rojo, J. Bundy, H. Williams, 2016, Environmental microbiology.

Biochemical diversity of betaines in earthworms.

Manuel Liebeke, J. Bundy, 2013, Biochemical and biophysical research communications.

Identifying biochemical phenotypic differences between cryptic species

T. Ebbels, Manuel Liebeke, M. Bruford, 2014, Biology Letters.

Earthworms Produce phytochelatins in Response to Arsenic

Manuel Liebeke, M. Bennett, P. Kille, 2013, PloS one.

'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus

S. Stürzenbaum, P. Kille, J. Bundy, 2008, BMC Biology.

Environmental metabolomics: a critical review and future perspectives

Mark R. Viant, Jacob G. Bundy, M. Viant, 2009, Metabolomics.

Phenylalanine Metabolism Regulates Reproduction and Parasite Melanization in the Malaria Mosquito

A. Crisanti, T. Nolan, J. Bundy, 2014, PloS one.

Metabolism of 4-fluoroaniline and 4-fluorobiphenyl in the earthworm Eisenia veneta characterized by high-resolution NMR spectroscopy with directly coupled HPLC-NMR and HPLC-MS

J. Lindon, J. Nicholson, J. Bundy, 2002, Xenobiotica; the fate of foreign compounds in biological systems.

Modelling the acid/base 1H NMR chemical shift limits of metabolites in human urine

Timothy M. D. Ebbels, Maria De Iorio, Jacob G. Bundy, 2016, Metabolomics.

Modelling the acid/base 1H NMR chemical shift limits of metabolites in human urine

M. De Iorio, T. Ebbels, G. Tredwell, 2016, Metabolomics.

Current and future therapies for Pseudomonas aeruginosa infection in patients with cystic fibrosis

P. Freemont, S. Faust, J. Bundy, 2017, FEMS microbiology letters.

Metabolites and metals in Metazoa--what role do phytochelatins play in animals?

P. Kille, J. Bundy, 2014, Metallomics : integrated biometal science.

Telomerase deficiency in humans is associated with systemic age-related changes in energy metabolism

M. Bennett, E. K. Parkinson, T. Roberts, 2022, bioRxiv.

Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis

Fabien Jourdan, Nathalie Poupin, Florence Vinson, 2021, PLoS Comput. Biol..

Pathway analysis in metabolomics: pitfalls and best practice for the use of over-representation analysis

Rachel P. J. Lai, T. Ebbels, F. Jourdan, 2021, bioRxiv.

NMR-derived developmental metabolic trajectories: an approach for visualizing the toxic actions of trichloroethylene during embryogenesis

Ronald S. Tjeerdema, Mark R. Viant, Jacob G. Bundy, 2005, Metabolomics.

Metabolomic profiling of rapid cold hardening and cold shock in Drosophila melanogaster.

V. Loeschcke, N. Nielsen, A. Malmendal, 2007, Journal of insect physiology.

Environmental Metabonomics: Applying Combination Biomarker Analysis in Earthworms at a Metal Contaminated Site

J. Lindon, J. Nicholson, J. Bundy, 2004, Ecotoxicology.

Standard reporting requirements for biological samples in metabolomics experiments: environmental context

Susanna-Assunta Sansone, Dawn Field, Norman Morrison, 2007, Metabolomics.

Cross-platform comparison of Caenorhabditis elegans tissue extraction strategies for comprehensive metabolome coverage.

E. Want, A. Leroi, J. Bundy, 2011, Analytical chemistry.

Metabonomic assessment of toxicity of 4‐fluoroaniline, 3,5‐difluoroaniline and 2‐fluoro‐4‐methylaniline to the earthworm Eisenia veneta (rosa): Identification of new endogenous biomarkers

Sunia A Trauger, John C Lindon, Jeremy K Nicholson, 2002, Environmental toxicology and chemistry.

The cellular geometry of growth drives the amino acid economy of Caenorhabditis elegans

Jacob G Bundy, A. Leroi, J. Swire, 2009, Proceedings of the Royal Society B: Biological Sciences.

Species Interactions Alter Evolutionary Responses to a Novel Environment

A. Phillimore, T. Bell, J. Bundy, 2012, PLoS biology.

Nitrogen and Carbon Status Are Integrated at the Transcriptional Level by the Nitrogen Regulator NtrC In Vivo

Mauricio Barahona, M. Stumpf, M. Bennett, 2013, mBio.

An NMR‐based metabonomic approach to the investigation of coelomic fluid biochemistry in earthworms under toxic stress

J G Bundy, J C Lindon, J. Nicholson, 2001, FEBS letters.

Identification of the Elusive Pyruvate Reductase of Chlamydomonas reinhardtii Chloroplasts

J. Bundy, P. Nixon, H. Taha, 2015, Plant & cell physiology.

Metabolite profiling to characterize disease-related bacteria: gluconate excretion by Pseudomonas aeruginosa mutants and clinical isolates from cystic fibrosis patients

Manuel Liebeke, J. Bundy, V. Behrends, 2013 .

Metabolic adaptations of Pseudomonas aeruginosa during cystic fibrosis chronic lung infections.

B. Ryall, J. Bundy, H. Williams, 2013, Environmental microbiology.

Metabolite Profiling to Characterize Disease-related Bacteria

Manuel Liebeke, J. Bundy, H. Williams, 2013, The Journal of Biological Chemistry.

Metabolic consequences of p300 gene deletion in human colon cancer cells.

C. Caldas, J. Brenton, Ana-Teresa Maia, 2006, Cancer research.

Metabolic Consequences of p 300 Gene Deletion in Human Colon Cancer Cells

C. Caldas, J. Brenton, Ana-Teresa Maia, 2006 .

Metabolic Youth in Middle Age: Predicting Aging in Caenorhabditis elegans Using Metabolomics.

A. Leroi, J. Bundy, Sarah K. Davies, 2015, Journal of proteome research.

Metabolic profiling detects early effects of environmental and lifestyle exposure to cadmium in a human population

James K. Ellis, Claus Svendsen, Lars Järup, 2012, BMC Medicine.

Time-Resolved Metabolic Footprinting for Nonlinear Modeling of Bacterial Substrate Utilization

J. Bundy, H. Williams, V. Behrends, 2009, Applied and Environmental Microbiology.

Metabolomic profiling of heat stress: hardening and recovery of homeostasis in Drosophila.

V. Loeschcke, N. Nielsen, A. Malmendal, 2006, American journal of physiology. Regulatory, integrative and comparative physiology.

Environmental Applications of Metabonomic Profiling

J. Bundy, 2005 .

A software complement to AMDIS for processing GC-MS metabolomic data.

Jacob G. Bundy, Volker Behrends, Gregory D. Tredwell, 2011, Analytical biochemistry.

Bayesian deconvolution and quantification of metabolites in complex 1D NMR spectra using BATMAN

Maria De Iorio, Timothy M D Ebbels, Jacob G Bundy, 2014, Nature Protocols.

The mutational structure of metabolism in Caenorhabditis elegans

A. Burt, A. Leroi, C. Baer, 2016, Evolution; international journal of organic evolution.

C. elegans metallothioneins: response to and defence against ROS toxicity.

S. Stürzenbaum, J. Bundy, F. Geier, 2011, Molecular bioSystems.

Discrimination of pathogenic clinical isolates and laboratory strains of Bacillus cereus by NMR-based metabolomic profiling.

K. Brindle, J. Bundy, D. Ellar, 2005, FEMS microbiology letters.

Aromatic metabolites from the coelomic fluid of Eisenia earthworm species

Morgan A. Wyatt, M. Viant, Manuel Liebeke, 2017 .

Investigation of the physiological relationship between the cyanide-insensitive oxidase and cyanide production in Pseudomonas aeruginosa.

J. Bundy, D. Mossialos, H. Williams, 2006, Microbiology.

Remodelling of microRNAs in colorectal cancer by hypoxia alters metabolism profiles and 5-fluorouracil resistance

T. Soga, J. Bundy, R. Lowe, 2017, Human molecular genetics.

Hypertonic Saline Therapy in Cystic Fibrosis: Do Population Shifts Caused by the Osmotic Sensitivity of Infecting Bacteria Explain the Effectiveness of this Treatment?

B. Ryall, J. Bundy, H. Williams, 2010, Front. Microbio..

Metabolic profiling of Pseudomonas aeruginosa demonstrates that the anti-sigma factor MucA modulates osmotic stress tolerance.

B. Ryall, J. Bundy, H. Williams, 2010, Molecular bioSystems.

International NMR-based environmental metabolomics intercomparison exercise.

Mark R Viant, Tobias K Karakach, Timothy W Collette, 2009, Environmental science & technology.

A metabolic trade-off between phosphate and glucose utilization in Escherichia coli.

B. Liu, B. Ryall, T. Ferenci, 2014, Molecular bioSystems.

Metabolic footprinting: extracellular metabolomic analysis.

J. Bundy, H. Williams, V. Behrends, 2014, Methods in molecular biology.

Combining spectral ordering with peak fitting for one-dimensional NMR quantitative metabolomics.

Jie Hao, Timothy M D Ebbels, Jacob G Bundy, 2013, Analytical chemistry.

Fluorodeoxyuridine affects the identification of metabolic responses to daf-2 status in Caenorhabditis elegans

A. Leroi, J. Bundy, Sarah K. Davies, 2012, Mechanisms of Ageing and Development.

Differences in strategies to combat osmotic stress in Burkholderia cenocepacia elucidated by NMR‐based metabolic profiling

J. Bundy, H. Williams, V. Behrends, 2011, Letters in applied microbiology.

Validation of metabolomics for toxic mechanism of action screening with the earthworm Lumbricus rubellus

Timothy M. D. Ebbels, Jacob G. Bundy, Jasmin K. Sidhu, 2009, Metabolomics.

Dyskeratosis Congenita Links Telomere Attrition to  Age-Related Systemic Energetics

M. Bennett, E. K. Parkinson, T. Roberts, 2023, The journals of gerontology. Series A, Biological sciences and medical sciences.

Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.

Balázs Papp, Stephen G Oliver, Kevin M Brindle, 2007, Genome research.

Multivariate metabolic profiling using 1H nuclear magnetic resonance spectroscopy of freeze-tolerant and freeze-intolerant earthworms exposed to frost.

J. Bundy, M. Holmstrup, H. Ramløv, 2003, Cryo letters.

Metallothioneins may not be enough--the role of phytochelatins in invertebrate metal detoxification.

Manuel Liebeke, P. Kille, J. Bundy, 2014, Environmental science & technology.

13C Labeling of Nematode Worms to Improve Metabolome Coverage by Heteronuclear Nuclear Magnetic Resonance Experiments

A. Leroi, J. Bundy, F. Geier, 2019, Front. Mol. Biosci..

Between-person comparison of metabolite fitting for NMR-based quantitative metabolomics.

Gregory D. Tredwell, Jacob G Bundy, Manuel Liebeke, 2011, Analytical chemistry.

Limitations of a Cosolvent for Ecotoxicity Testing of Hydrophobic Compounds

M T D Cronin, J G Bundy, H Maciel, 2003, Bulletin of environmental contamination and toxicology.

Development of QSARs to investigate the bacterial toxicity and biotransformation potential of aromatic heterocylic compounds.

J G Bundy, G I Paton, G. Paton, 2001, Chemosphere.

'systems Toxicology' Approach Identifies Coordinated Metabolic Responses to Copper in a Terrestrial Non-model Invertebrate, the Earthworm Lumbricus Rubellus

Morgan, S. Stürzenbaum, P. Kille, 2022 .

Avoiding the Misuse of Pathway Analysis Tools in Environmental Metabolomics

Rachel P. J. Lai, F. Jourdan, J. Bundy, 2022, Environmental Science and Technology.

Pseudomonas aeruginosa infection in cystic fibrosis: pathophysiological mechanisms and therapeutic approaches

P. Freemont, S. Faust, J. Bundy, 2016, Expert review of respiratory medicine.

Direct Assessment of Metabolite Utilization by Pseudomonas aeruginosa during Growth on Artificial Sputum Medium

J. Bundy, H. Williams, V. Behrends, 2013, Applied and Environmental Microbiology.

GlnK Facilitates the Dynamic Regulation of Bacterial Nitrogen Assimilation

Mauricio Barahona, Adam Gosztolai, Martin Buck, 2017, bioRxiv.

ToF‐SIMS analysis of biomolecules in the model organism Caenorhabditis elegans

J. Bundy, D. Mcphail, S. Fearn, 2013 .