C. Wenger

发表

Molecular Systems Biology Peer Review Process File a Dynamic Model of Proteome Changes Reveals New Roles for Transcript Alteration in Yeast Transaction Report

A. Gasch, J. Coon, James Hose, 2022 .

A proteomics search algorithm specifically designed for high-resolution tandem mass spectra.

J. Coon, C. Wenger, 2013, Journal of proteome research.

Value of using multiple proteases for large-scale mass spectrometry-based proteomics.

J. Coon, C. Wenger, D. Swaney, 2010, Journal of proteome research.

Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search

Brian L. Frey, Lloyd M. Smith, Gloria M. Sheynkman, 2015, Journal of proteome research.

Gas-phase purification enables accurate, large-scale, multiplexed proteome quantification with isobaric tagging

M. Westphall, G. McAlister, J. Coon, 2011, Nature Methods.

Top-down proteomics on a chromatographic time scale using linear ion trap fourier transform hybrid mass spectrometers.

N. Kelleher, Lihua Jiang, K. Kwast, 2007, Analytical chemistry.

Proteomic and phosphoproteomic comparison of human ES and iPS cells

Jennifer M. Bolin, Derek J. Bailey, Mitchell D. Probasco, 2011, Nature Methods.

Global Post-Translational Modification Discovery

Brian L. Frey, Lloyd M. Smith, M. Scalf, 2016, Journal of proteome research.

Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry

J. Thomson, J. Coon, C. Wenger, 2009, Proceedings of the National Academy of Sciences.

Breakthrough Technologies Large-Scale Phosphoprotein Analysis in Medicago truncatula Roots Provides Insight into in Vivo Kinase Activity in Legumes 1 [ W ]

M. Sussman, J. Coon, Jean-Michel Ané, 2010 .

Versatile online-offline engine for automated acquisition of high-resolution tandem mass spectra.

N. Kelleher, C. Wenger, D. Robinson, 2008, Analytical chemistry.

Quantum criticality at the infinite complete basis set limit: A thermodynamic analog of the Yang and Lee theorem

S. Kais, C. Wenger, Qi Wei, 2006 .

COMPASS: A suite of pre‐ and post‐search proteomics software tools for OMSSA

Derek J. Bailey, Craig D Wenger, Douglas H Phanstiel, 2011, Proteomics.

Mass spectrometry data acquisition mode to achieve a more reliable quantification of proteins

J. Coon, C. Wenger, D. Phanstiel, 2011 .

RNA–protein analysis using a conditional CRISPR nuclease

Craig D Wenger, Kaihong Zhou, Laurakay Bruhn, 2013, Proceedings of the National Academy of Sciences.

Top-down proteomics reveals novel protein forms expressed in methanosarcina acetivorans

Neil L. Kelleher, William W. Metcalf, N. Kelleher, 2009, Journal of the American Society for Mass Spectrometry.

Prophylactic treatment of BALB/c mice with cyclosporine A and its analog B-5-49 enhances resistance to Leishmania major.

C. Wenger, B. Mathison, N. Behforouz, 1986, Journal of immunology.

Phosphoproteomics for the masses.

Craig D Wenger, Joshua J Coon, J. Coon, 2010, ACS chemical biology.

Plotgardener: Cultivating precise multi-panel figures in R

Erika M. Deoudes, M. Love, C. Wenger, 2021, bioRxiv.

Large-Scale Phosphoprotein Analysis in Medicago truncatula Roots Provides Insight into in Vivo Kinase Activity in Legumes1[W]

M. Sussman, J. Coon, Jean-Michel Ané, 2009, Plant Physiology.

Amine-reactive Neutron-encoded Labels for Highly Plexed Proteomic Quantitation*

Derek J. Bailey, Joshua J. Coon, Michael S. Westphall, 2013, Molecular & Cellular Proteomics.

Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval.

Leonid Zamdborg, Craig D Wenger, Neil L Kelleher, 2009, Journal of proteome research.

Sub-part-per-million Precursor and Product Mass Accuracy for High-throughput Proteomics on an Electron Transfer Dissociation-enabled Orbitrap Mass Spectrometer*

Joshua J. Coon, Graeme C. McAlister, G. McAlister, 2010, Molecular & Cellular Proteomics.

Characterization of proteomic and metabolomic responses to dietary factors and supplements.

N. Kelleher, T. Kodadek, G. Harrigan, 2007, The Journal of nutrition.

Characterizing Peptide Neutral Losses Induced by Negative Electron-Transfer Dissociation (NETD)

Derek J. Bailey, G. McAlister, J. Coon, 2012, Journal of The American Society for Mass Spectrometry.

Global amine and acid functional group modification of proteins.

N. Kelleher, P. J. Belshaw, C. Wenger, 2008, Analytical chemistry.

Characterization and Diagnostic Value of Amino Acid Side Chain Neutral Losses Following Electron-Transfer Dissociation

J. Coon, M. V. Lee, Shane L. Hubler, 2011, Journal of the American Society for Mass Spectrometry.

Post-acquisition ETD spectral processing for increased peptide identifications

Joshua J. Coon, Graeme C. McAlister, David M. Good, 2009, Journal of the American Society for Mass Spectrometry.

Instant spectral assignment for advanced decision tree-driven mass spectrometry

Pengzhi Yu, Christopher M Rose, Derek J. Bailey, 2012, Proceedings of the National Academy of Sciences.

Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification.

Craig D Wenger, Joshua J Coon, G. McAlister, 2010, Analytical chemistry.

Bedtoolsr: An R package for genomic data analysis and manipulation

Eric S Davis, Mayura N Patwardhan, Craig D Wenger, 2019, J. Open Source Softw..

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

A. Gasch, J. Coon, James Hose, 2011, Molecular Systems Biology.

Intellinsity: a tool for visualization and analysis of liquid chromatography/tandem mass spectrometry sampling events.

J. Coon, C. Wenger, D. Good, 2010, Rapid communications in mass spectrometry : RCM.

Analysis of tandem mass spectra by FTMS for improved large-scale proteomics with superior protein quantification.

G. McAlister, M. V. Lee, C. Wenger, 2010, Analytical chemistry.

The effect of interfering ions on search algorithm performance for electron‐transfer dissociation data

J. Coon, C. Wenger, D. Good, 2010, Proteomics.