P. Gafken

Philip R. Gafken, Y. Ogata, P. Gafken, 2016, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

Lentivirus-mediated Gene Transfer in Hematopoietic Stem Cells Is Impaired in SHIV-infected, ART-treated Nonhuman Primates.

Philip R. Gafken, Hannah W. Miller, Shiu-Lok Hu, 2015, Molecular therapy : the journal of the American Society of Gene Therapy.

Evaluation of matrix‐assisted laser desorption/ionization‐time of flight mass spectrometry proteomic profiling: identification of alpha 2‐HS glycoprotein B‐chain as a biomarker of diet

Philip R. Gafken, P. Gafken, J. Lampe, 2005, Proteomics.

Internal Standard Triggered-Parallel Reaction Monitoring Mass Spectrometry Enables Multiplexed Quantification of Candidate Biomarkers in Plasma

Jeffrey R. Whiteaker, Lisa A. Jones, Jacob J. Kennedy, 2022, Analytical chemistry.

Myc-dependent Mitochondrial Generation of Acetyl-CoA Contributes to Fatty Acid Biosynthesis and Histone Acetylation during Cell Cycle Entry*

Fionnuala Morrish, Philip R. Gafken, J. Kelleher, 2010, The Journal of Biological Chemistry.

A biomarker panel for risk of early respiratory failure following hematopoietic cell transplantation

Philip R. Gafken, C. Bollard, S. Farag, 2022, Blood advances.

Murine chronic graft-versus-host disease proteome profiling discovers CCL15 as a novel biomarker in patients.

Nathan H. Roy, Philip R. Gafken, Y. Ogata, 2018, Blood.

Erratum: Computational Proteomics Analysis System (CPAS): An extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments (Journal of Proteome Research (2006) 5 (112-121))

David J. States, Brendan MacLean, Adam Rauch, 2006 .

State-dependent protein-protein interactions mediating 4-1BB CAR Signaling

Philip R. Gafken, ChenWei Lin, Josh Gustafson, 2022, bioRxiv.

Modification of IL-6 by hypochlorous acid: effects on receptor binding and possible role in treatment of COVID-19

Philip R. Gafken, P. Gafken, J. Meschke, 2021 .

Ubiquitination-Linked Phosphorylation of the FANCI S/TQ Cluster Contributes to Activation of the Fanconi Anemia I/D2 Complex.

Philip R. Gafken, T. Taniguchi, P. Gafken, 2017, Cell reports.

Hypochlorous acid as a disinfectant for high‐risk HPV: Insight into the mechanism of action

Philip R. Gafken, P. Gafken, S. Alam, 2022, Journal of medical virology.

Aberrant Glycosylation of Plasma Proteins in Severe Preeclampsia Promotes Monocyte Adhesion

Jonathan D. Stallings, Philip R. Gafken, Y. Ogata, 2014, Reproductive Sciences.

Histone H3.3 is enriched in covalent modifications associated with active chromatin.

Philip R. Gafken, S. Henikoff, P. Gafken, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Heritable chromatin structure: Mapping “memory” in histones H3 and H4

Philip R. Gafken, M. Parthun, D. Gottschling, 2002, Proceedings of the National Academy of Sciences of the United States of America.

DGCR8 Mediates Repair of UV-Induced DNA Damage Independently of RNA Processing.

Philip R. Gafken, B. Clurman, K. Sugasawa, 2017, Cell reports.

Dot1p Modulates Silencing in Yeast by Methylation of the Nucleosome Core

Philip R. Gafken, Fred van Leeuwen, D. Gottschling, 2002, Cell.

A Chicken Ovalbumin Upstream Promoter Transcription Factor I (COUP-TFI) Complex Represses Expression of the Gene Encoding Tumor Necrosis Factor α-induced Protein 8 (TNFAIP8)*♦

Philip R. Gafken, M. Leid, P. Gafken, 2009, Journal of Biological Chemistry.

NFX1-123 and Poly(A) Binding Proteins Synergistically Augment Activation of Telomerase in Human Papillomavirus Type 16 E6-Expressing Cells

Philip R. Gafken, D. Galloway, L. Gewin, 2007, Journal of Virology.

ARTEMIS: A Novel Mass-Spec Platform for HLA-Restricted Self and Disease-Associated Peptide Discovery

Roland K. Strong, Mi-Youn Brusniak, Philip R. Gafken, 2021, Frontiers in Immunology.

Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of facioscapulohumeral muscular dystrophy

Philip R. Gafken, S. Tapscott, Y. Ogata, 2019, eLife.

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.

Ruedi Aebersold, Jimmy K Eng, Parag Mallick, 2008, Journal of proteome research.

Mass spectrometric quantification of acetylation at specific lysines within the amino-terminal tail of histone H4.

Philip R Gafken, Philip R. Gafken, D. Gottschling, 2003, Analytical biochemistry.

Dynamic changes in histone acetylation regulate origins of DNA replication

Philip R. Gafken, T. Tsukiyama, P. Gafken, 2010, Nature Structural &Molecular Biology.

Identification of long-lived proteins retained in cells undergoing repeated asymmetric divisions

Philip R. Gafken, D. Gottschling, P. Gafken, 2014, Proceedings of the National Academy of Sciences.

Proteomics-driven Antigen Discovery for Development of Vaccines Against Gonorrhea*

Philip R. Gafken, K. Holmes, M. Unemo, 2016, Molecular & Cellular Proteomics.

Quantitative Proteomic Analysis of the Cell Envelopes and Native Membrane Vesicles Derived from Gram‐Negative Bacteria

Philip R. Gafken, P. Gafken, R. Zielke, 2014, Current protocols in microbiology.

Biomarker Panel for Chronic Graft-Versus-Host Disease.

Philip R. Gafken, Y. Ogata, B. Storer, 2016, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

A targeted proteomics–based pipeline for verification of biomarkers in plasma

Pei Wang, Jacob Kennedy, Jeffrey R. Whiteaker, 2011, Nature Biotechnology.

Translation Control of Swarming Proficiency in Bacillus subtilis by 5-Amino-pentanolylated Elongation Factor P*

Sarah B Erickson, Philip R. Gafken, M. Ibba, 2016, The Journal of Biological Chemistry.

An overview of the qualitative analysis of phosphoproteins by mass spectrometry.

P. Gafken, 2009, Methods in molecular biology.

Ubiquitin–Proteasome-Mediated Synaptic Reorganization: A Novel Mechanism Underlying Rapid Ischemic Tolerance

Philip R. Gafken, R. Simon, D. Henshall, 2008, The Journal of Neuroscience.

Multiplex targeted proteomic assay for biomarker detection in plasma: a pancreatic cancer biomarker case study.

David R Goodlett, John Rush, Philip R Gafken, 2012, Journal of proteome research.

Multiplexed triage of candidate biomarkers in plasma using internal standard triggered-parallel reaction monitoring mass spectrometry

Jeffrey R. Whiteaker, Lisa A. Jones, A. Paulovich, 2021, bioRxiv.

Discovery and Validation of a Compound to Target Ewing’s Sarcoma

Philip R. Gafken, W. Vogel, M. Leid, 2021, Pharmaceutics.

Phosphorylation at S365 is a gatekeeper event that changes the structure of Cx43 and prevents down-regulation by PKC

Philip R. Gafken, P. Gafken, P. Lampe, 2007, The Journal of cell biology.

Ultrasensitive detection and characterization of posttranslational modifications using surface-enhanced Raman spectroscopy.

Ziding Feng, D. McLerran, P. Gafken, 2006, Analytical chemistry.

Identification of a Novel Bcl-2-interacting Mediator of Cell Death (Bim) E3 Ligase, Tripartite Motif-containing Protein 2 (TRIM2), and Its Role in Rapid Ischemic Tolerance-induced Neuroprotection*

Philip R. Gafken, R. Simon, D. Henshall, 2011, The Journal of Biological Chemistry.

Cyclic Rhamnosylated Elongation Factor P Establishes Antibiotic Resistance in Pseudomonas aeruginosa

Julian P. Whitelegge, Kym F. Faull, Sarah B Erickson, 2015, mBio.

13C- and 15N-Labeling Strategies Combined with Mass Spectrometry Comprehensively Quantify Phospholipid Dynamics in C. elegans

Blair C. R. Dancy, Philip R. Gafken, P. Gafken, 2015, PloS one.

Quantitative proteomics reveals key roles for post-transcriptional gene regulation in the molecular pathology of FSHD

Philip R. Gafken, S. Tapscott, Y. Ogata, 2018, bioRxiv.