I. Shatsky

发表

Assembly of 48S Translation Initiation Complexesfrom Purified Components with mRNAs That Have Some Base Pairingwithin Their 5′ UntranslatedRegions

W. Merrick, S. E. Dmitriev, I. Terenin, 2003, Molecular and Cellular Biology.

Unidirectional constant rate motion of the ribosomal scanning particle during eukaryotic translation initiation

A. Spirin, I. Shatsky, O. Alekhina, 2011, Nucleic acids research.

Distinctive Properties of the 5′-Untranslated Region of Human Hsp70 mRNA*

V. Prassolov, S. E. Dmitriev, I. Shatsky, 2003, Journal of Biological Chemistry.

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

Patrick B. F. O'Connor, P. Baranov, D. Andreev, 2016, Nucleic acids research.

Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression

Patrick B. F. O'Connor, D. Morris, E. Kenny, 2015, eLife.

Cap- and IRES-independent scanning mechanism of translation initiation as an alternative to the concept of cellular IRESs

I. Terenin, I. Shatsky, D. Andreev, 2010, Molecules and cells.

Differential contribution of the m7G-cap to the 5′ end-dependent translation initiation of mammalian mRNAs

V. Prassolov, W. Merrick, I. Terenin, 2009, Nucleic acids research.

Internal ribosome entry sites of viral and cellular RNAs

I. Shatsky, D. Sizova, 2000, Molecular Biology.

Molecular mechanisms of translation initiation in eukaryotes

V. Agol, C. Hellen, T. Pestova, 2001, Proceedings of the National Academy of Sciences of the United States of America.

A factor that specifically binds to the 5'‐untranslated region of encephalomyocarditis virus RNA

I. Shatsky, A. Borovjagin, A. Evstafieva, 1990, FEBS letters.

eIF4G2 balances its own mRNA translation via a PCBP2-based feedback loop

I. Terenin, I. Shatsky, I. Osterman, 2019, RNA.

Pyrimidine tract binding protein strongly stimulates in vitro encephalomyocarditis virus RNA translation at the level of preinitiation complex formation

T. Pestova, I. Shatsky, A. Borovjagin, 1994, FEBS letters.

A researcher’s guide to the galaxy of IRESs

I. Terenin, I. Shatsky, D. Andreev, 2016, Cellular and Molecular Life Sciences.

Efficient Translation Initiation Directed by the 900-Nucleotide-Long and GC-Rich 5′ Untranslated Region of the Human Retrotransposon LINE-1 mRNA Is Strictly Cap Dependent Rather than Internal Ribosome Entry Site Mediated

Ivan N. Shatsky, Ilya M. Terenin, Sergey E. Dmitriev, 2007, Molecular and Cellular Biology.

Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2

D. Andreev, I. Terenin, I. Shatsky, 2008, Nature Structural &Molecular Biology.

The 5′ untranslated region of Apaf‐1 mRNA directs translation under apoptosis conditions via a 5′ end‐dependent scanning mechanism

I. Terenin, I. Shatsky, D. Andreev, 2012, FEBS letters.

Sliding of a 43S ribosomal complex from the recognized AUG codon triggered by a delay in eIF2-bound GTP hydrolysis

D. Andreev, I. Terenin, I. Shatsky, 2015, Nucleic acids research.

Four translation initiation pathways employed by the leaderless mRNA in eukaryotes

Ivan N. Shatsky, Ilya M. Terenin, Sergey E. Dmitriev, 2016, Scientific Reports.

A novel uORF-based regulatory mechanism controls translation of the human MDM2 and eIF2D mRNAs during stress.

D. Andreev, I. Terenin, I. Shatsky, 2019, Biochimie.

Unusual ribosome binding properties of mRNA encoding bacteriophage λ repressor

A. Bogdanov, I. Shatsky, A. Balakin, 1992 .

Efficient cap-dependent translation of mammalian mRNAs with long and highly structured 5′-untranslated regions in vitro and in vivo

I. Terenin, I. Shatsky, D. Andreev, 2009, Molecular Biology.

Cap-independent translation initiation of Apaf-1 mRNA based on a scanning mechanism is determined by some features of the secondary structure of its 5′ untranslated region

I. Terenin, I. Shatsky, D. Andreev, 2013, Biochemistry (Moscow).

Ribosome Pausing at Inefficient Codons at the End of the Replicase Coding Region Is Important for Hepatitis C Virus Genome Replication

M. Marz, I. Shatsky, D. Andreev, 2020, International journal of molecular sciences.

Non-AUG translation initiation in mammals

P. Baranov, D. Andreev, G. Loughran, 2022, Genome biology.

Eukaryotic translation elongation factor 2 (eEF2) catalyzes reverse translocation of the eukaryotic ribosome

E. Alkalaeva, I. Shatsky, A. Ivanov, 2018, The Journal of Biological Chemistry.

A Cross-Kingdom Internal Ribosome Entry Site Reveals a Simplified Mode of Internal Ribosome Entry

S. E. Dmitriev, I. Terenin, I. Shatsky, 2005, Molecular and Cellular Biology.

RNA--protein interactions within the internal translation initiation region of encephalomyocarditis virus RNA.

I. Shatsky, A. Borovjagin, M. Ezrokhi, 1991, Nucleic acids research.

Translation control of mRNAs encoding mammalian translation initiation factors.

P. Baranov, G. Loughran, I. Terenin, 2018, Gene.

Molecular environment of the subdomain IIIe loop of the RNA IRES element of hepatitis C virus on the human 40S ribosomal subunit

I. Shatsky, A. Malygin, G. Karpova, 2006, Russian journal of bioorganic chemistry.

Assembly of 48S Translation Initiation Complexes from Puriﬁed Components with mRNAs That Have Some Base Pairing within Their 5 (cid:2) Untranslated Regions

W. Merrick, S. E. Dmitriev, I. Terenin, 2003 .

Differential factor requirement to assemble translation initiation complexes at the alternative start codons of foot-and-mouth disease virus RNA.

I. Terenin, I. Shatsky, E. Martínez-Salas, 2007, RNA.

Encarna disease virus RNA complexes at the alternative start codons of foot-and-mouth Differential factor requirement to assemble translation initiation

I. Terenin, I. Shatsky, E. Martínez-Salas, 2022 .

PABP-interacting proteins, PAIP1 and PAIP2, affect translation termination

E. Alkalaeva, I. Terenin, I. Shatsky, 2019 .

The RNA-binding properties of protein synthesis initiation factor eIF-2.

C. Proud, A. Kaminski, I. Shatsky, 1994, Biochimica et biophysica acta.

Minor Secondary-Structure Variation in the 5"-Untranslated Region of the β-Globin mRNA Changes the Concentration Requirements for eIF2

I. Terenin, I. Shatsky, S. Dmitriev, 2003, Molecular Biology.

Molecular environment of the IIId subdomain of the IRES element of hepatitits C virus RNA on the human 40S ribosomal subunit

I. Shatsky, A. Malygin, G. Karpova, 2009, Russian Journal of Bioorganic Chemistry.

An Approach to Identifying the Functionally Important RNA Sites by Complementary Addressed Modification

I. Shatsky, A. Malygin, G. Karpova, 2003, Molecular Biology.

Positive and negative effects of the major mammalian messenger ribonucleoprotein p50 on binding of 40 S ribosomal subunits to the initiation codon of beta-globin mRNA.

L. Ovchinnikov, W. Merrick, I. Shatsky, 2002, The Journal of biological chemistry.

Mutual Effects of Translation Initiation Factors in Binding to the IRES of the Encephalomyocarditis Virus RNA

I. Shatsky, S. Dmitriev, A. Pisarev, 2004, Molecular Biology.

Functional dissection of eukaryotic initiation factor 4F: the 4A subunit and the central domain of the 4G subunit are sufficient to mediate internal entry of 43S preinitiation complexes

C. Hellen, T. Pestova, I. Shatsky, 1996, Molecular and cellular biology.

Proteins surrounding hairpin IIIe of the hepatitis C virus internal ribosome entry site on the human 40S ribosomal subunit

I. Shatsky, A. Ivanov, A. Malygin, 2006, Nucleic acids research.

Topography of RNA in the ribosome: Localization of the 3′‐end of the 23 S RNA on the surface of the 50 S ribosomal subunit by immune electron microscopy

A. Bogdanov, I. Shatsky, A. Evstafieva, 1980, FEBS letters.

Localization of the 3' end of Escherichia coli 16 S RNA by electron microscopy of antibody-labelled subunits.

A. Bogdanov, I. Shatsky, V. Vasiliev, 1979, Journal of molecular biology.

How does the mRNA pass through the ribosome?

A. Bogdanov, Andrei V Bakin, I. Shatsky, 1991, Biochimie.

Polyadenylate-binding protein–interacting proteins PAIP1 and PAIP2 affect translation termination

E. Alkalaeva, I. Terenin, I. Shatsky, 2019, The Journal of Biological Chemistry.

Positioning of subdomain IIId and apical loop of domain II of the hepatitis C IRES on the human 40S ribosome

I. Shatsky, A. Malygin, G. Karpova, 2008, Nucleic acids research.

Topography of rna in the ribosome localization of the 16 s rna 5' end by immune electron microscopy.

A. Bogdanov, I. Shatsky, V. Vasiliev, 1982, Journal of molecular biology.

Peptidyl transferase inhibitors arrest the ribosome at specific amino acid codons: insights from an integrated approach

D. Andreev, A. Mironov, I. Terenin, 2017 .

Translatome and transcriptome analysis of TMA20 (MCT-1) and TMA64 (eIF2D) knockout yeast strains

D. Andreev, I. Kulakovskiy, I. Terenin, 2019, Data in brief.

28 RIBOSOMES , PEPTIDES AND ANTIBIOTIC RESISTANCE

T. Tenson, I. Shatsky, J. Sedman, 2014 .

Tma64/eIF2D, Tma20/MCT-1, and Tma22/DENR Recycle Post-termination 40S Subunits In Vivo.

A. Hinnebusch, N. Guydosh, I. Shatsky, 2018, Molecular cell.

Pros and cons of pDNA and mRNA transfection to study mRNA translation in mammalian cells.

D. Andreev, I. Terenin, I. Shatsky, 2016, Gene.

Transition of the mRNA sequence downstream from the initiation codon into a single-stranded conformation is strongly promoted by binding of the initiator tRNA

A. Bogdanov, I. Shatsky, E. Skripkin, 1990, Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression.

Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes

Patrick B. F. O'Connor, Alexander V. Zhdanov, P. Baranov, 2015, Genome Biology.

PSF Acts through the Human Immunodeficiency Virus Type 1 mRNA Instability Elements To Regulate Virus Expression

I. Shatsky, A. Traish, A. Zolotukhin, 2003, Molecular and Cellular Biology.

Expression Instability Elements To Regulate Virus Immunodeficiency Virus Type 1 mRNA PSF Acts through the Human

I. Shatsky, A. Traish, A. Zolotukhin, 2003 .

GTP-independent tRNA Delivery to the Ribosomal P-site by a Novel Eukaryotic Translation Factor*

W. Merrick, I. Terenin, I. Shatsky, 2010, The Journal of Biological Chemistry.

Spatial organization of template polynucleotides on the ribosome determined by fluorescence methods.

A. Bogdanov, Andrei V Bakin, I. Shatsky, 1991, Journal of molecular biology.

Positive and Negative Effects of the Major Mammalian Messenger Ribonucleoprotein p50 on Binding of 40 S Ribosomal Subunits to the Initiation Codon of β-Globin mRNA*

L. Ovchinnikov, W. Merrick, I. Shatsky, 2002, The Journal of Biological Chemistry.

Lipoxygenase mRNA Silencing in Erythroid Differentiation The 3′UTR Regulatory Complex Controls 60S Ribosomal Subunit Joining

M. Hentze, A. Ostareck-Lederer, D. Ostareck, 2001, Cell.

A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs.

R. Jackson, C. Hellen, T. Pestova, 1998, Genes & development.

Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry

C. Hellen, T. Pestova, I. Shatsky, 1996, Molecular and cellular biology.

Specific Interaction of Eukaryotic Translation Initiation Factor 3 with the 5′ Nontranslated Regions of Hepatitis C Virus and Classical Swine Fever Virus RNAs

C. Hellen, T. Pestova, I. Shatsky, 1998, Journal of Virology.

The role of ribonucleic acids in the organization and functioning of ribosomes of E. coli.

A. Bogdanov, I. Shatsky, A. Kopylov, 1980, Sub-cellular biochemistry.

Determination of the minimal fragment of the poliovirus IRES that is necessary for the formation of a specific complex with the human glycyl-tRNA synthetase

E. Nikonova, O. Nikonov, M. Garber, 2016, Biofizika.

Glycyl-tRNA synthetase specifically binds to the poliovirus IRES to activate translation initiation

I. Terenin, I. Shatsky, D. Andreev, 2012, Nucleic acids research.

Transcriptome-wide studies uncover the diversity of modes of mRNA recruitment to eukaryotic ribosomes

I. Terenin, I. Shatsky, D. Andreev, 2014, Critical reviews in biochemistry and molecular biology.

Functional and Structural Similarities between the Internal Ribosome Entry Sites of Hepatitis C Virus and Porcine Teschovirus, a Picornavirus

Y. Kaku, I. Shatsky, G. Belsham, 2004, Journal of Virology.

Translation Eukaryotic Initiation Factor 4G Recognizes a Specific Structural Element within the Internal Ribosome Entry Site of Encephalomyocarditis Virus RNA*

C. Hellen, T. Pestova, I. Shatsky, 1998, The Journal of Biological Chemistry.

HCV IRES interacts with the 18S rRNA to activate the 40S ribosome for subsequent steps of translation initiation

I. Shatsky, A. Malygin, G. Karpova, 2013, Nucleic acids research.

Proteins of the human 40S ribosomal subunit involved in hepatitis C IRES Binding as revealed from fluorescent labeling

I. Shatsky, A. Malygin, G. Karpova, 2013, Biochemistry (Moscow).

Does HIV-1 mRNA 5'-untranslated region bear an internal ribosome entry site?

I. Terenin, I. Shatsky, D. Andreev, 2016, Biochimie.

A novel mechanism of eukaryotic translation initiation that is neither m7G-cap-, nor IRES-dependent

I. Terenin, I. Shatsky, D. Andreev, 2012, Nucleic acids research.

I. Terenin, I. Shatsky, D. Andreev, 2006, Molecular Biology.

Elusive Trans-Acting Factors Which Operate with Type I (Poliovirus-like) IRES Elements

D. Andreev, I. Shatsky, M. Niepmann, 2022, International journal of molecular sciences.

Modifications of Ribosome Profiling that Provide New Data on the Translation Regulation

D. Andreev, I. Shatsky, Viktoriya V Smirnova, 2021, Biochemistry (Moscow).

Eukaryotic translation initiation machinery can operate in a prokaryotic-like mode without eIF2

Ivan N. Shatsky, Ilya M. Terenin, Sergey E. Dmitriev, 2008 .

Molecular Mechanisms of Translation Initiation in Mammals Studied by in vitroReconstruction of Initiation Complexes

I. Shatsky, 2001, Molecular Biology.

Specific mechanisms of translation initiation in higher eukaryotes: the eIF4G2 story

I. Terenin, I. Shatsky, Ekaterina D Shestakova, 2022, RNA.

Ribosomal leaky scanning through a translated uORF requires eIF4G2

I. Kulakovskiy, I. Terenin, I. Shatsky, 2022, Nucleic acids research.

Cap-Independent Translation: What's in a Name?

I. Terenin, I. Shatsky, D. Andreev, 2018, Trends in biochemical sciences.

The conventional mechanism of mRNA recruitment to ribosomes in eukaryotes and factors involved in this process

I. Terenin, I. Shatsky, D. Andreev, 2014 .

Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF

Audrey M. Michel, Patrick B. F. O'Connor, Stephen J. Kiniry, 2020, Proceedings of the National Academy of Sciences.

Conversion of 48S translation preinitiation complexes into 80S initiation complexes as revealed by toeprinting

I. Shatsky, S. Dmitriev, M. Rubtsova, 2003, FEBS letters.

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling

Audrey M. Michel, Stephen J. Kiniry, A. Goesmann, 2019, International journal of molecular sciences.

A Leaderless mRNA Can Bind to Mammalian 80S Ribosomes and Direct Polypeptide Synthesis in the Absence of Translation Initiation Factors

I. Terenin, I. Shatsky, D. Andreev, 2006, Molecular and Cellular Biology.

Translation Initiation Factors Polypeptide Synthesis in the Absence of Mammalian 80 S Ribosomes and Direct A Leaderless mRNA Can Bind to

I. Terenin, I. Shatsky, D. Andreev, 2006 .

Unusual ribosome binding properties of mRNA encoding bacteriophage lambda repressor.

A. Bogdanov, I. Shatsky, E. Skripkin, 1992, Nucleic Acids Research.

Topography of RNA in the ribosome: location of the 3′‐end of 5 S RNA on the central protuberance of the 50 S subunit

I. Shatsky, A. Bogdanov, A. Evstafieva, 1980, FEBS letters.

Localization of 5′ and 3′ ends of the ribosome‐bound segment of template polynucleotides by immune electron microscopy.

I. Shatsky, A. Bogdanov, A. Evstafieva, 1983, The EMBO journal.

[5] Electron microscopy studies of ribosomal RNA

I. Shatsky, V. Vasiliev, 1988 .

Structural analysis of the interaction of the pyrimidine tract-binding protein with the internal ribosomal entry site of encephalomyocarditis virus and foot-and-mouth disease virus RNAs.

C. Hellen, I. Shatsky, V. Kolupaeva, 1996, RNA.

Archaeal translation initiation factor aIF2 can substitute for eukaryotic eIF2 in ribosomal scanning during mammalian 48S complex formation.

M. Garber, I. Terenin, I. Shatsky, 2011, Journal of molecular biology.

Influence of the hepatitis C virus 3′‐untranslated region on IRES‐dependent and cap‐dependent translation initiation

I. Terenin, I. Shatsky, M. Niepmann, 2010, FEBS letters.

Unprecedentedly efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF

Audrey M. Michel, Patrick B. F. O'Connor, Stephen J. Kiniry, 2020, bioRxiv.