T. Uchida

发表

The Iron Chaperone Protein CyaY from Vibrio cholerae Is a Heme-Binding Protein.

T. Uchida, N. Kobayashi, Souichiro Muneta, 2017, Biochemistry.

Heme Iron Coordination Structure of Heme Transport Protein HutB from Vibrio Cholerae

T. Uchida, K. Ishimori, Takumi Funamizu, 2017 .

Dual role of the active-center cysteine in human peroxiredoxin 1: Peroxidase activity and heme binding.

T. Uchida, K. Ishimori, Yuta Watanabe, 2017, Biochemical and biophysical research communications.

Heme-binding characteristics of the isolated PAS-A domain of mouse Per2, a transcriptional regulatory factor associated with circadian rhythms.

T. Uchida, K. Ishimori, Koya Hayasaka, 2008, Biochemistry.

Heterosynaptic enhancement of the excitability of hippocampal mossy fibers by long‐range spill‐over of glutamate

S. Fukuda, H. Kamiya, T. Uchida, 2012, Hippocampus.

Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme.

M. Chance, M. Brenowitz, T. Uchida, 2003, Journal of molecular biology.

Radical transfer but not heme distal residues is essential for pH dependence of dye-decolorizing activity of peroxidase from Vibrio cholerae.

T. Uchida, K. Ishimori, Issei Omura, 2021, Journal of inorganic biochemistry.

Unusual Pressure Effects on Ligand Rebinding to the Human Myoglobin Leucine 29 Mutants*

T. Uchida, K. Ishimori, I. Morishima, 2000, The Journal of Biological Chemistry.

Investigation of the redox-dependent modulation of structure and dynamics in human cytochrome c.

F. Inagaki, T. Saio, T. Uchida, 2016, Biochemical and biophysical research communications.

An approach to the O2 activating mononuclear non-heme Fe enzymes: structural characterization of Fe(II)–acetato complex and formation of alkylperoxoiron(III) species with the highly hindered hydrotris(3-tert-butyl-5-isopropyl-1-pyrazolyl)borate

T. Uchida, S. Hikichi, M. Akita, 2000 .

First Synthetic NO−Heme−Thiolate Complex Relevant to Nitric Oxide Synthase and Cytochrome P450nor

Yasuteru Urano, Kazuya Kikuchi, Tetsuo Nagano, 2000 .

Subunit-subunit interactions play a key role in the heme-degradation reaction of HutZ from Vibrio cholerae.

T. Uchida, K. Ishimori, Kazuki Ota, 2019, Dalton transactions.

The Interaction of Covalently Bound Heme with the Cytochrome c Maturation Protein CcmE*

T. Uchida, S. Ferguson, T. Kitagawa, 2004, Journal of Biological Chemistry.

HmuS from Yersinia pseudotuberculosis is a non-canonical heme-degrading enzyme to acquire iron from heme.

T. Uchida, K. Ishimori, S. Ozaki, 2017, Biochimica et biophysica acta. General subjects.

Evidence for Displacements of the C-helix by CO Ligation and DNA Binding to CooA Revealed by UV Resonance Raman Spectroscopy*

M. Kubo, Y. Mizutani, T. Uchida, 2006, Journal of Biological Chemistry.

Identification and Functional and Spectral Characterization of a Globin-coupled Histidine Kinase from Anaeromyxobacter sp. Fw109-5*

T. Uchida, K. Ishimori, Kenichi Kitanishi, 2011, The Journal of Biological Chemistry.

Molecular oxygen regulates the enzymatic activity of a heme-containing diguanylate cyclase (HemDGC) for the synthesis of cyclic di-GMP.

T. Uchida, K. Ishimori, Y. Hayakawa, 2010, Biochimica et biophysica acta.

A Dye-Decolorizing Peroxidase from Vibrio cholerae.

Yoshikazu Tanaka, T. Uchida, K. Ishimori, 2015, Biochemistry.

Unique Peroxidase Reaction Mechanism in Prostaglandin Endoperoxide H Synthase-2

T. Uchida, K. Ishimori, I. Morishima, 2007, Journal of Biological Chemistry.

Anti-allergy activities of Kuji amber extract and kujigamberol.

T. Uchida, K. Kimura, Shota Uesugi, 2018, Fitoterapia.

Specific heme binding to heme regulatory motifs in iron regulatory proteins and its functional significance.

T. Uchida, K. Ishimori, K. Iwai, 2019, Journal of inorganic biochemistry.

Redox-dependent axial ligand replacement and its functional significance in heme-bound iron regulatory proteins.

T. Uchida, K. Ishimori, Mari Ogura, 2018, Journal of inorganic biochemistry.

Dynamic Ligation Properties of the Escherichia coli Heme Chaperone CcmE to Non-covalently Bound Heme*

T. Uchida, S. Ferguson, T. Kitagawa, 2006, Journal of Biological Chemistry.

Iron chelators inhibit the heme-degradation reaction by HutZ from Vibrio cholerae.

T. Uchida, K. Ishimori, Y. Sekine, 2017, Dalton transactions.

A single mutation converts Alr5027 from cyanobacteria Nostoc sp. PCC 7120 to a heme-binding protein with heme-degrading ability.

T. Uchida, K. Ishimori, Nobuhiko Dojun, 2019, Journal of inorganic biochemistry.

Heme binding to cold shock protein D, CspD, from Vibrio cholerae.

T. Uchida, K. Ishimori, Dayeon Nam, 2022, Biochemical and biophysical research communications.

Role of His63 in HutZ from Vibrio cholerae in the heme degradation reaction and heme binding.

T. Uchida, K. Ishimori, Y. Sekine, 2019, Dalton transactions.

Regulation of the expression of the nickel uptake system in Vibrio cholerae by iron and heme via ferric uptake regulator (Fur).

T. Uchida, K. Ishimori, Kazuyoshi Muranishi, 2022, Journal of inorganic biochemistry.

On the Relationship of Coral Allene Oxide Synthase to Catalase

T. Uchida, A. Brash, T. Kitagawa, 2006, Journal of Biological Chemistry.

Energetic Mechanism of Cytochrome c-Cytochrome c Oxidase Electron Transfer Complex Formation under Turnover Conditions Revealed by Mutational Effects and Docking Simulation*

S. Yoshikawa, K. Shinzawa-Itoh, T. Saio, 2016, The Journal of Biological Chemistry.

Reaction intermediates in the heme degradation reaction by HutZ from Vibrio cholerae.

T. Uchida, K. Ishimori, S. Yeh, 2017, Dalton transactions.

Mechanistic insights into heme-mediated transcriptional regulation via a bacterial manganese-binding iron regulator, iron response regulator (Irr)

Y. Matsumoto, T. Uchida, K. Ishimori, 2020, The Journal of Biological Chemistry.

Unusual heme binding in the bacterial iron response regulator protein: spectral characterization of heme binding to the heme regulatory motif.

T. Uchida, K. Ishimori, K. Iwai, 2011, Biochemistry.

Novel Iron Porphyrin−Alkanethiolate Complex with Intramolecular NH···S Hydrogen Bond: Synthesis, Spectroscopy, and Reactivity

Y. Urano, K. Kikuchi, T. Uchida, 1999 .

Synthesis, structure, and H2O2-dependent catalytic functions of disulfide-bridged dicopper(I) and related thioether-copper(I) and thioether-copper(II) complexes.

T. Uchida, K. Yoshizawa, T. Yamabe, 2000, Inorganic chemistry.

Isolation of yeast Ca2+ signal transduction inhibitors from the Early Cretaceous Burmese amber.

T. Uchida, H. Koshino, K. Kimura, 2019, Fitoterapia.

Identification of histidine 77 as the axial heme ligand of carbonmonoxy CooA by picosecond time-resolved resonance Raman spectroscopy.

Y. Mizutani, T. Uchida, K. Ishimori, 2000, Biochemistry.

Active site structure of SoxB-type cytochrome bo3 oxidase from thermophilic Bacillus.

T. Uchida, H. Hori, T. Kitagawa, 2000, Journal of inorganic biochemistry.

SOUL in mouse eyes is a new hexameric heme-binding protein with characteristic optical absorption, resonance Raman spectral, and heme-binding properties.

T. Uchida, J. Igarashi, Toru Shimizu, 2004, Biochemistry.

Haem-dependent dimerization of PGRMC1/Sigma-2 receptor facilitates cancer proliferation and chemoresistance

H. Handa, M. Ohmura, M. Suematsu, 2016, Nature Communications.

Title Haem-dependent dimerization of PGRMC 1 / Sigma-2 receptorfacilitates cancer proliferation and chemoresistance

H. Handa, M. Ohmura, M. Suematsu, 2016 .

Spectroscopic and DNA‐binding characterization of the isolated heme‐bound basic helix–loop–helix‐PAS‐A domain of neuronal PAS protein 2 (NPAS2), a transcription activator protein associated with circadian rhythms

Yuko Sato, T. Uchida, J. Igarashi, 2006, The FEBS journal.

Structural basis for the heme transfer reaction in heme uptake machinery from Corynebacteria.

T. Uchida, K. Ishimori, N. Muraki, 2019, Chemical communications.

T. Todo, T. Uchida, T. Kitagawa, 2006, Journal of Biological Chemistry.

Construction of a Subnanosecond Time-Resolved, High-Resolution Ultraviolet Resonance Raman Measurement System and its Application to Reveal the Dynamic Structures of Proteins

M. Kubo, T. Uchida, T. Kitagawa, 2008, Applied spectroscopy.

Heme-Binding Properties of HupD Functioning as a Substrate-Binding Protein in a Heme-Uptake ABC-Transporter System in Listeria monocytogenes

Takashi Hayashi, T. Uchida, K. Ishimori, 2014 .

The C‐terminal residues of the 2b protein of Cucumber mosaic virus are important for efficient expression in Escherichia coli and DNA‐binding

T. Uchida, C. Masuta, A. Meguro, 2010, FEBS letters.

Specific hydrogen-bonding networks responsible for selective O2 sensing of the oxygen sensor protein HemAT from Bacillus subtilis.

Katsuaki Kobayashi, M. Kubo, T. Uchida, 2006, Biochemistry.

Role of conserved arginine in the heme distal site of HutZ from Vibrio cholerae in the heme degradation reaction.

T. Uchida, K. Ishimori, Sayaka Umetsu, 2019, Archives of biochemistry and biophysics.

Cytoplasmic Heme-Binding Protein (HutX) from Vibrio cholerae Is an Intracellular Heme Transport Protein for the Heme-Degrading Enzyme, HutZ.

Yoshikazu Tanaka, T. Uchida, K. Ishimori, 2016, Biochemistry.

Role of Tyr-288 at the Dioxygen Reduction Site of Cytochrome bo Studied by Stable Isotope Labeling and Resonance Raman Spectroscopy*

T. Uchida, T. Mogi, T. Kitagawa, 2004, Journal of Biological Chemistry.

Resonance Raman and Ligand Binding Studies of the Oxygen-sensing Signal Transducer Protein HemAT from Bacillus subtilis *

T. Uchida, H. Nakajima, T. Ohta, 2002, The Journal of Biological Chemistry.

Heme Environmental Structure of CooA Is Modulated by the Target DNA Binding

K. Ohkubo, S. Takahashi, T. Uchida, 1998, The Journal of Biological Chemistry.

Mechanism for transduction of the ligand-binding signal in heme-based gas sensory proteins revealed by resonance Raman spectroscopy.

T. Uchida, T. Kitagawa, 2005, Accounts of chemical research.

Crystallographic and Spectroscopic Studies of Peroxide-derived Myoglobin Compound II and Occurrence of Protonated FeIV–O*

T. Uchida, Å. Røhr, T. Kitagawa, 2007, Journal of Biological Chemistry.

Structural characterization of a binuclear center of a Cu-containing NO reductase homologue from Roseobacter denitrificans: EPR and resonance Raman studies.

T. Uchida, H. Hori, T. Kitagawa, 2004, Biochimica et biophysica acta.

Osmotic pressure effects identify dehydration upon cytochrome c - cytochrome c oxidase complex formation contributing to a specific electron pathway formation.

S. Yoshikawa, K. Shinzawa-Itoh, T. Uchida, 2020, The Biochemical journal.

Spectroscopic characterization of the isolated heme‐bound PAS‐B domain of neuronal PAS domain protein 2 associated with circadian rhythms

T. Uchida, J. Igarashi, Toru Shimizu, 2005, The FEBS journal.

Mechanism of Electron Transfer from Cytochrome c to Cytochrome c Oxidase Regulated by Hydrophobic Interaction

S. Yoshikawa, K. Shinzawa-Itoh, T. Saio, 2018 .

Effects of the bHLH domain on axial coordination of heme in the PAS-A domain of neuronal PAS domain protein 2 (NPAS2): conversion from His119/Cys170 coordination to His119/His171 coordination.

T. Uchida, K. Ishimori, Toru Shimizu, 2012, Journal of inorganic biochemistry.

CO-dependent Activity-controlling Mechanism of Heme-containing CO-sensor Protein, Neuronal PAS Domain Protein 2*

T. Uchida, Toru Shimizu, I. Sagami, 2005, Journal of Biological Chemistry.

Characteristic structure and environment in FAD cofactor of (6-4) photolyase along function revealed by resonance Raman spectroscopy.

T. Todo, T. Uchida, T. Ohta, 2006, The journal of physical chemistry. B.

The Effects of Heme Pocket Hydrophobicity on the Ligand Binding Dynamics in Myoglobin as Studied with Leucine 29 Mutants*

T. Uchida, K. Ishimori, I. Morishima, 1997, The Journal of Biological Chemistry.

Ligand migration in human myoglobin: steric effects of isoleucine 107(G8) on O(2) and CO binding.

S. Takahashi, T. Uchida, K. Ishimori, 2001, Biophysical journal.

Structural Characterization of Heme Environmental Mutants of CgHmuT that Shuttles Heme Molecules to Heme Transporters

T. Uchida, K. Ishimori, Mari Ogura, 2016, International journal of molecular sciences.

Redox-controlled backbone dynamics of human cytochrome c revealed by 15N NMR relaxation measurements.

T. Uchida, K. Ishimori, K. Kawano, 2010, Biochemical and biophysical research communications.

Linkage of monovalent and divalent ion binding in the folding of the P4-P6 domain of the Tetrahymena ribozyme.

M. Chance, M. Brenowitz, C. Ralston, 2002, Biochemistry.

Reactive complexes in myoglobin and nitric oxide synthase

B. Mayer, T. Uchida, Toru Shimizu, 2008 .

Spectroscopic studies on HasA from Yersinia pseudotuberculosis.

T. Uchida, K. Ishimori, C. T. Migita, 2014, Journal of inorganic biochemistry.

Heme Proximal Hydrogen Bonding between His170 and Asp132 Plays an Essential Role in the Heme Degradation Reaction of HutZ from Vibrio cholerae.

T. Uchida, K. Ishimori, Y. Sekine, 2017, Biochemistry.

A heme degradation enzyme, HutZ, from Vibrio cholerae.

M. Ikeda-Saito, T. Uchida, K. Ishimori, 2012, Chemical communications.

Polyethylene glycol promotes autoxidation of cytochrome c.

T. Saio, T. Uchida, K. Ishimori, 2018, Biochimica et biophysica acta. General subjects.

Molecular Mechanism for Heme-Mediated Inhibition of 5-Aminolevulinic Acid Synthase 1

T. Uchida, K. Ishimori, Mari Ogura, 2014 .

NMR basis for interprotein electron transfer gating between cytochrome c and cytochrome c oxidase

S. Yoshikawa, K. Shinzawa-Itoh, T. Uchida, 2011, Proceedings of the National Academy of Sciences.

Protein oxidation mediated by heme-induced active site conversion specific for heme-regulated transcription factor, iron response regulator

M. Ikeda-Saito, T. Uchida, K. Ishimori, 2016, Scientific Reports.

Effects of the intramolecular disulfide bond on ligand binding dynamics in myoglobin.

T. Uchida, K. Ishimori, I. Morishima, 1997, Biochemistry.

Resonance raman studies of oxo intermediates in the reaction of pulsed cytochrome bo with hydrogen peroxide.

T. Uchida, T. Mogi, T. Kitagawa, 2000, Biochemistry.

Heme Iron Coordination Structure of Heme Transport Protein HutB from Vibrio Cholerae

T. Uchida, K. Ishimori, Takumi Funamizu, 2017 .

Unusual Heme Binding in the Bacterial Iron Response Regulator Protein (Irr): Spectral Characterization of Heme Binding to Heme Regulatory Motif

T. Uchida, K. Ishimori, H. Ishikawa, 2011 .

Energetic Mechanism of Cytochrome c-Cytochrome c Oxidase Electron Transfer Complex Formation under Turnover Conditions Revealed by Mutational Effects and Docking Simulation*

S. Yoshikawa, K. Shinzawa-Itoh, T. Saio, 2016, The Journal of Biological Chemistry.