Defne Surujon

发表

Use of a Probabilistic Motif Search to Identify Histidine Phosphotransfer Domain-Containing Proteins

D. Ratner, Defne Surujon, 2016, PloS one.

A Pangenomic Perspective on the Emergence, Maintenance, and Predictability of Antibiotic Resistance

Defne Surujon, Stephen J. Wood, Karen Zhu, 2020, The Pangenome.

Entropy of a bacterial stress response is a generalizable predictor for fitness and antibiotic sensitivity

Defne Surujon, R. Isberg, Wenwen Huo, 2020, Nature communications.

Entropy of a bacterial stress response is a generalizable predictor for fitness and antibiotic sensitivity

Defne Surujon, R. Isberg, Wenwen Huo, 2019, Nature Communications.

Forecasting bacterial survival-success and adaptive evolution through multi-omics stress-response mapping, network analyses and machine learning

Defne Surujon, T. van Opijnen, Zeyu Zhu, 2018, bioRxiv.

A bacterial pan-genome makes gene essentiality strain-dependent and evolvable

C. Rock, Defne Surujon, J. Rosch, 2022, bioRxiv.

ShinyOmics: collaborative exploration of omics-data

Tim van Opijnen, Defne Surujon, Defne Surujon, 2020, BMC Bioinformatics.

Lessons learned in virulence factor identification and data management from a hackathon on microbial virulence

E. Holloway, Kumardeep Chaudhary, M. Feldgarden, 2022, F1000Research.

A role for long-chain acyl-CoA synthetase-4 (ACSL4) in diet-induced phospholipid remodeling and obesity-associated adipocyte dysfunction

Xianlin Han, R. Coleman, A. Greenberg, 2018, Molecular metabolism.

Higher Temperatures Generically Favor Slower-Growing Bacterial Species in Multispecies Communities

Defne Surujon, 2019 .

Small-World Networks and RNA Secondary Structures

Peter Clote, Yann Ponty, Defne Surujon, 2018, J. Comput. Biol..