Xin Chen

发表

Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective

Ying Xu, Qin Ma, Chao Liu, 2014, Science China Life Sciences.

RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis

Q. Ma, Xin Chen, Chao Liu, 2018, bioRxiv.

OP-BIBJ170088 1..8

Ying Xu, Q. Ma, Xin Chen, 2017 .

RECTA: Regulon Identification Based on Comparative Genomics and Transcriptomics Analysis

Q. Ma, Xin Chen, Chao Liu, 2018, bioRxiv.

Computational elucidation of regulatory network responding to acid stress in Lactococcus lactis MG1363

Q. Ma, Xin Chen, Huansheng Cao, 2018 .

DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses

Xin Chen, Qin Ma, Adam McDermaid, 2017, Bioinform..

LTMG (Left truncated mixture Gaussian) based modeling of transcriptional regulatory heterogeneities in single cell RNA-seq data – a perspective from the kinetics of mRNA metabolism

Q. Ma, Xin Chen, M. Fishel, 2018, bioRxiv.

CINPER: An Interactive Web System for Pathway Prediction for Prokaryotes

Xin Chen, X. Mao, Ying Xu, 2012, PloS one.

OP-NARE131048 654..659

Ying Xu, Fenglou Mao, Q. Ma, 2013 .

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

Xin Chen, Ying Xu, Jincai Yang, 2012, Nucleic Acids Res..

Rapid determination of momordicoside in Momoradica charantia seeds by capillary zone electrophoresis

Xin Chen, Qun Sun, Fang Chen, 2009 .

GeneQC: A quality control tool for gene expression estimation based on RNA-sequencing reads mapping

Qin Ma, Juan Xie, Xin Chen, 2018, bioRxiv.

DOOR: a prokaryotic operon database for genome analyses and functional inference

Ying Xu, Qin Ma, Xin Chen, 2019, Briefings Bioinform..

DOOR 2.0: presenting operons and their functions through dynamic and integrated views

Xin Chen, Ying Xu, Jincai Yang, 2013, Nucleic Acids Res..

Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective

Fei Ji, Ying Xu, Q. Ma, 2014, Science China Life Sciences.

Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

R. Dixon, A. Ragauskas, Hui Shen, 2017, Biotechnology for Biofuels.

DMINDA: an integrated web server for DNA motif identification and analyses

Xin Chen, Ying Xu, Chuan Zhou, 2014, Nucleic Acids Res..

Revisiting operons: an analysis of the landscape of transcriptional units in E. coli

Xin Chen, Ying Xu, Bingqiang Liu, 2015, BMC Bioinformatics.

A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation

Juan Xie, Xin Chen, Qin Ma, 2018, Front. Genet..

D ynamic changes in tr anscriptome and c ell wall composition underlying brassinosteroid-mediated lig nifica tion of swit chgrass suspension cells

R. Dixon, A. Ragauskas, Hui Shen, 2017 .

A probabilistic model-based bi-clustering method for single-cell transcriptomic data analysis

Xin Chen, Qin Ma, Chi Zhang, 2017, bioRxiv.

Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum)

R. Dixon, Hui Shen, S. Lenaghan, 2018, Plant biotechnology journal.

Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum)

R. Dixon, Hui Shen, S. Lenaghan, 2018, Plant biotechnology journal.

Genome-Scale Identification of Cell-Wall-Related Genes in Switchgrass through Comparative Genomics and Computational Analyses of Transcriptomic Data

Qin Ma, Richard A. Dixon, Chi Zhang, 2016, BioEnergy Research.

SeqTU: A Web Server for Identification of Bacterial Transcription Units

Ying Xu, Wen-Chi Chou, Xin Chen, 2017, Scientific Reports.

Identification and Typing of Human Enterovirus: A Genomic Barcode Approach

Ying Xu, Bin Liu, Fan Li, 2011, PloS one.

Computational elucidation of regulatory network 1 responding to acid stress in Lactococcus lactis MG1363

Q. Ma, Xin Chen, Huansheng Cao, 2018 .