X. Mao

发表

Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective

Ying Xu, Qin Ma, Chao Liu, 2014, Science China Life Sciences.

The percentage of bacterial genes on leading versus lagging strands is influenced by multiple balancing forces

Yanbin Yin, Yanbin Yin, Ying Xu, 2012, Nucleic acids research.

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

Chuan-Yun Li, Liping Wei, Jianmin Wu, 2011, Nucleic Acids Res..

Elucidation of How Cancer Cells Avoid Acidosis through Comparative Transcriptomic Data Analysis

M. Mehta, Fenglou Mao, Kun Xu, 2013, PloS one.

Integration of sequence-similarity and functional association information can overcome intrinsic problems in orthology mapping across bacterial genomes

Ying Xu, Guojun Li, Qin Ma, 2011, Nucleic acids research.

Genomic heterogeneity of multiple synchronous lung cancer

Dongmei Lin, Li Zhang, John V Heymach, 2016, Nature Communications.

24 Combined analysis of antigen presentation and T cell recognition reveals restricted immune responses in melanoma

Eytan Ruppin, Nir Friedman, Dan Reshef, 2018, Cancer discovery.

Multiplex profiling of peritoneal metastases from gastric adenocarcinoma identified novel targets and molecular subtypes that predict treatment response

S. Hanash, J. Ajani, G. Calin, 2019, Gut.

A Comparative Study of Gene-Expression Data of Basal Cell Carcinoma and Melanoma Reveals New Insights about the Two Cancers

Juan Cui, Chi Zhang, M. Mehta, 2012, PloS one.

Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma

P. A. Futreal, N. Navin, J. Wargo, 2020, Nature Communications.

The histologic phenotype of lung cancers may be driven by transcriptomic features rather than genomic characteristics

P. A. Futreal, Xin Hu, I. Wistuba, 2021, bioRxiv.

Multi-region exome sequencing reveals genomic evolution from preneoplasia to lung adenocarcinoma

K. Ashizawa, Xin Hu, P. Scheet, 2019, Nature Communications.

Comprehensive T cell repertoire characterization of non-small cell lung cancer

Mark M. Davis, P. A. Futreal, R. Emerson, 2020, Nature Communications.

New Insights into Clostridia Through Comparative Analyses of Their 40 Genomes

Ying Xu, Yanbin Yin, Q. Ma, 2014, BioEnergy Research.

Molecular Analysis of Clinically Defined Subsets of High-Grade Serous Ovarian Cancer

P. A. Futreal, K. Baggerly, G. Mills, 2020, Cell reports.

Metabolic reprogramming toward oxidative phosphorylation identifies a therapeutic target for mantle cell lymphoma

Michael L. Wang, Shaojun Zhang, Guangchun Han, 2019, Science Translational Medicine.

Experimental models of undifferentiated pleomorphic sarcoma and malignant peripheral nerve sheath tumor

A. Lazar, J. Slopis, Xingzhi Song, 2022, Laboratory Investigation.

Multi-modal molecular programs regulate melanoma cell state

P. A. Futreal, M. Morgan, A. G. Robertson, 2022, Nature Communications.

P2.02-013 Investigation of Genomic and TCR Repertoire Evolution of AAH, AIS, MIA to Invasive Lung Adenocarcinoma by Multiregion Exome and TCR Sequencing

J. Fujimoto, Xin Hu, W. Hong, 2017 .

Computational prediction of the osmoregulation network in Synechococcus sp. WH8102

I. Paulsen, V. Olman, X. Mao, 2010, BMC Genomics.

Abstract 213: Exome sequencing of paired primary and relapsed small cell lung cancers reveals increased copy number aberration complexity to be associated with disease relapse

I. Wistuba, Yamei Chen, J. Heymach, 2018, Tumor Biology.

CINPER: An Interactive Web System for Pathway Prediction for Prokaryotes

Xin Chen, X. Mao, Ying Xu, 2012, PloS one.

OP-NARE131048 654..659

Ying Xu, Fenglou Mao, Q. Ma, 2013 .

Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary

Tao Cai, Liping Wei, John G. Olyarchuk, 2005, Bioinform..

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

Xin Chen, Ying Xu, Jincai Yang, 2012, Nucleic Acids Res..

KOBAS server: a web-based platform for automated annotation and pathway identification

Jianmin Wu, Tao Cai, Jingchu Luo, 2006, Nucleic Acids Res..

Genomic and immune heterogeneity are associated with differential responses to therapy in melanoma

Hannah C. Beird, Jeffrey E. Lee, L. Chin, 2017, npj Genomic Medicine.

Telomere dysfunction activates YAP1 to drive tissue inflammation

R. DePinho, A. Rashid, Jun Li, 2020, Nature Communications.

Genes and (Common) Pathways Underlying Drug Addiction

Liping Wei, Chuan-Yun Li, Xizeng Mao, 2007, PLoS Comput. Biol..

Author Correction: Multi-region exome sequencing reveals genomic evolution from preneoplasia to lung adenocarcinoma

P. A. Futreal, K. Ashizawa, Xin Hu, 2019, Nature Communications.

Hypoxia and miscoupling between reduced energy efficiency and signaling to cell proliferation drive cancer to grow increasingly faster.

V. Olman, X. Mao, Ying Xu, 2012, Journal of molecular cell biology.

New cellular models of undifferentiated pleomorphic sarcoma and malignant peripheral nerve sheath tumor

Hannah C. Beird, K. Tomczak, A. Lazar, 2021, bioRxiv.

The histologic phenotype of lung cancers is associated with transcriptomic features rather than genomic characteristics

P. A. Futreal, Xin Hu, I. Wistuba, 2021, Nature Communications.

Multi-omic molecular profiling reveals potentially targetable abnormalities shared across multiple histologies of brain metastasis

J. Huse, X. Zhang, Dihua Yu, 2021, Acta Neuropathologica.

Molecular analysis of early rice stamen development using organ-specific gene expression profiling

Liping Wei, Liping Wei, X. Mao, 2006, Plant Molecular Biology.

Variants with a low allele frequency detected in genomic DNA affect the accuracy of mutation detection in cell‐free DNA by next‐generation sequencing

K. Shaw, J. Roth, S. Swisher, 2018, Cancer.

DOOR 2.0: presenting operons and their functions through dynamic and integrated views

Xin Chen, Ying Xu, Jincai Yang, 2013, Nucleic Acids Res..

Comprehensive characterization of the genomic alterations in human gastric cancer

Guoqing Wang, Wen-Chi Chou, Victor Olman, 2015, International journal of cancer.

Somatic Mutations in Circulating Cell-Free DNA and Risk for Hepatocellular Carcinoma in Hispanics

P. A. Futreal, Jianhua Zhang, L. Beretta, 2021, International journal of molecular sciences.

Understanding the commonalities and differences in genomic organizations across closely related bacteria from an energy perspective

Fei Ji, Ying Xu, Q. Ma, 2014, Science China Life Sciences.

Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma

P. A. Futreal, N. Navin, J. Wargo, 2020, Nature Communications.

PRDM16s transforms megakaryocyte-erythroid progenitors to acute myeloid leukemia-initiating cells.

P. A. Futreal, Matthew C. Hill, Koichi Takahashi, 2019, Blood.

Genome comparison using Gene Ontology (GO) with statistical testing

Liping Wei, Songgang Li, Xizeng Mao, 2006, BMC Bioinformatics.

A pilot study of pembrolizumab in smoldering myeloma: report of the clinical, immune, and genomic analysis.

V. Baladandayuthapani, Shaojun Zhang, Guangchun Han, 2019, Blood advances.

SEAS: A System for SEED-Based Pathway Enrichment Analysis

Yu Zhang, X. Mao, Ying Xu, 2011, PloS one.

DMINDA: an integrated web server for DNA motif identification and analyses

Xin Chen, Ying Xu, Chuan Zhou, 2014, Nucleic Acids Res..

Blocking immunosuppressive neutrophils deters pY696-EZH2–driven brain metastases

Jun Yao, J. Huse, S. Lakhani, 2020, Science Translational Medicine.

Revisiting operons: an analysis of the landscape of transcriptional units in E. coli

Xin Chen, Ying Xu, Bingqiang Liu, 2015, BMC Bioinformatics.

Enhancer reprogramming in PRC2-deficient malignant peripheral nerve sheath tumors induces a targetable de-differentiated state

P. A. Futreal, Hannah C. Beird, K. Hunt, 2021, Acta Neuropathologica.

Flowr: Robust and efficient pipelines using a simple language-agnostic approach

Sahil Seth, Jianhua Zhang, Xizeng Mao, 2015, bioRxiv.

Genome-Scale Identification of Cell-Wall-Related Genes in Switchgrass through Comparative Genomics and Computational Analyses of Transcriptomic Data

Qin Ma, Richard A. Dixon, Chi Zhang, 2016, BioEnergy Research.

A Cryptic BCR-PDGFRB Fusion Resulting in a Chronic Myeloid Neoplasm With Monocytosis and Eosinophilia: A Novel Finding With Treatment Implications.

Jianhua Zhang, A. Futreal, M. Routbort, 2020, Journal of the National Comprehensive Cancer Network : JNCCN.

Genomic and immune heterogeneity are associated with differential responses to therapy in melanoma

Hannah C. Beird, Jeffrey E. Lee, L. Chin, 2017, npj Genomic Medicine.

Computational prediction of the osmoregulation network in Synechococcus sp. WH8102

I. Paulsen, V. Olman, X. Mao, 2010, BMC Genomics.

Isolation and analysis of differentially expressed genes in dominant genic male sterility (DGMS) Brassica napus L. using subtractive PCR and cDNA microarray

Liping Wei, Kede Liu, X. Mao, 2007 .