G. Babnigg

发表

Analysis of periplasmic sensor domains from Anaeromyxobacter dehalogenans 2CP-C: Structure of one sensor domain from a histidine kinase and another from a chemotaxis protein

H. Szurmant, N. Duke, A. Joachimiak, 2013, MicrobiologyOpen.

Molecular control of gene expression by Brucella BaaR, an IclR-family repressor

J. Herrou, S. Crosson, Youngchang Kim, 2018, bioRxiv.

Co-occurrence of analogous enzymes determines evolution of a novel (βα)8-isomerase sub-family after non-conserved mutations in flexible loop.

C. Henry, A. Joachimiak, M. Endres, 2016, The Biochemical journal.

Predicting protein crystallization propensity from protein sequence

Andrzej Joachimiak, A. Joachimiak, G. Babnigg, 2010, Journal of Structural and Functional Genomics.

Develop the Knowledgebase, Computational Meth- Ods, and Capabilities to Advance Understanding and Prediction of Complex Biological Systems Computing Infrastructure, Bioinformatics, and Data Management 112 Center Blockinfor Blockincomputational Blockinbiology Blockinat Blockinthe Blockinuniversity Bl

Grigoriy E. Pinchuk, K. Nealson, M. Leuze, 2022 .

ProteomeWeb: A web‐based interface for the display and interrogation of proteomes

G. Babnigg, C. Giometti, György Babnigg, 2003, Proteomics.

Efficient recognition of protein fold at low sequence identity by conservative application of Psi‐BLAST: application

F. Collart, G. Babnigg, F. Stevens, 2005, Journal of molecular recognition : JMR.

Brucella periplasmic protein EipB is a molecular determinant of cell envelope integrity and virulence

Jason X. Cheng, J. Herrou, S. Crosson, 2019, bioRxiv.

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

Gordon A Anderson, John R Yates, Monica Riley, 2005, Proceedings of the National Academy of Sciences of the United States of America.

RsaM: a transcriptional regulator of Burkholderia spp. with novel fold

A. Joachimiak, S. C. Winans, K. Michalska, 2014, The FEBS journal.

Expression and phosphorylation of NHE1 in wild‐type and transformed human and rodent fibroblasts

E. Chang, G. Babnigg, M. Musch, 1994, Journal of cellular physiology.

Crystal Structure of SgcJ, An NTF2-Like Superfamily Protein Involved in Biosynthesis of the 9-Membered Enediyne Antitumor Antibiotic C-1027

B. Shen, G. Phillips, A. Joachimiak, 2016, The Journal of Antibiotics.

Structure of the ent-Copalyl Diphosphate Synthase PtmT2 from Streptomyces platensis CB00739, a Bacterial Type II Diterpene Synthase

B. Shen, G. Phillips, A. Joachimiak, 2016, Journal of the American Chemical Society.

Periplasmic protein EipA determines envelope stress resistance and virulence in Brucella abortus

Jason X. Cheng, J. Herrou, S. Crosson, 2018, bioRxiv.

Structural dynamics of a methionine γ-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate

G. Phillips, A. Joachimiak, J. Thorson, 2016, Structural dynamics.

Natural separation of the acyl-CoA ligase reaction results in a non-adenylating enzyme

B. Shen, G. Phillips, A. Joachimiak, 2018, Nature Chemical Biology.

Gene selection and cloning approaches for co-expression and production of recombinant protein–protein complexes

A. Joachimiak, B. Nocek, R. Jedrzejczak, 2015, Journal of Structural and Functional Genomics.

Crystal Structures of SgcE6 and SgcC, the Two-Component Monooxygenase That Catalyzes Hydroxylation of a Carrier Protein-Tethered Substrate during the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 in Streptomyces globisporus

B. Shen, G. Phillips, A. Joachimiak, 2016, Biochemistry.

The structure of a contact-dependent growth-inhibition (CDI) immunity protein from Neisseria meningitidis MC58.

C. Hayes, K. Tan, C. Goulding, 2015, Acta crystallographica. Section F, Structural biology communications.

The crystal structure of BlmI as a model for nonribosomal peptide synthetase peptidyl carrier proteins

B. Shen, G. Phillips, A. Joachimiak, 2014, Proteins.

Protein production for structural genomics using E. coli expression.

A. Joachimiak, Youngchang Kim, G. Babnigg, 2014, Methods in molecular biology.

Bradykinin-induced Ca2+ entry, release, and refilling of intracellular Ca2+ stores. Relationships revealed by image analysis of individual human fibroblasts.

G. Babnigg, M. Villereal, K. Byron, 1992, The Journal of biological chemistry.

Potent and Selective Covalent Inhibition of the Papain-like Protease from SARS-CoV-2

Russell B. Davidson, D. Sterner, S. Pokhrel, 2022, Nature Communications.

The CDI toxin of Yersinia kristensenii is a novel bacterial member of the RNase A superfamily

A. Joachimiak, C. Hayes, C. Goulding, 2017, Nucleic acids research.

Structural Characterization of CalS8, a TDP-α-d-Glucose Dehydrogenase Involved in Calicheamicin Aminodideoxypentose Biosynthesis*

G. Phillips, A. Joachimiak, M. Endres, 2015, The Journal of Biological Chemistry.

Structural Modifications of Methanococcus Jannaschii Flagellin Proteins Revealed by Proteome Analysis

J. Yates, G. Olsen, C. Reich, 2001, Proteomics.

A novel signal transduction protein: Combination of solute binding and tandem PAS‐like sensor domains in one polypeptide chain

C. Henry, A. Joachimiak, M. Endres, 2017, Protein science : a publication of the Protein Society.

NARBreakthroughArticle The CDI toxin of Yersiniakristensenii is a novel bacterial member of the RNase A superfamily

A. Joachimiak, C. Hayes, C. Goulding, 2017 .

Crystal Structure of the Zorbamycin-Binding Protein ZbmA, the Primary Self-Resistance Element in Streptomyces flavoviridis ATCC21892.

B. Shen, G. Phillips, A. Joachimiak, 2015, Biochemistry.

Perspectives for self-driving labs in synthetic biology.

Tyler W. H. Backman, Jose Manuel Martí, Daniel B. Arnold, 2022, Current opinion in biotechnology.

Induction of Osmoadaptive Mechanisms and Modulation of Cellular Physiology Help Bacillus licheniformis Strain SSA 61 Adapt to Salt Stress

A. Joachimiak, G. Babnigg, S. Paul, 2015, Current Microbiology.

How Aromatic Compounds Block DNA Binding of HcaR Catabolite Regulator*

A. Joachimiak, Youngchang Kim, L. Bigelow, 2015, The Journal of Biological Chemistry.

Evolution of substrate specificity in a retained enzyme driven by gene loss

Janaka N. Edirisinghe, C. Henry, A. Joachimiak, 2017, eLife.

Novel (cid:1) -glucosidase from human gut microbiome: substrate speciﬁcities and their switch

A. Joachimiak, R. Wilton, K. Tan, 2010 .

Structural and evolutionary relationships of “AT-less” type I polyketide synthase ketosynthases

B. Shen, G. Phillips, A. Joachimiak, 2015, Proceedings of the National Academy of Sciences.

Tyrosine phosphatase and cytochrome P450 activity are critical in regulating store-operated calcium channels in human fibroblasts

G. Babnigg, S. Son, M. Villereal, 2006, Experimental & Molecular Medicine.

Molecular control of gene expression by Brucella BaaR, an IclR-type transcriptional repressor

J. Herrou, S. Crosson, Youngchang Kim, 2018, The Journal of Biological Chemistry.

Crystal Structure of Thioesterase SgcE10 Supporting Common Polyene Intermediates in 9- and 10-Membered Enediyne Core Biosynthesis

B. Shen, G. Phillips, A. Joachimiak, 2017, ACS omega.

Structure of Apo- and Monometalated Forms of NDM-1—A Highly Potent Carbapenem-Hydrolyzing Metallo-β-Lactamase

Gyorgy Babnigg, Youngchang Kim, Robert Jedrzejczak, 2011, PloS one.

The Role of pp60c- src in the Regulation of Calcium Entry via Store-operated Calcium Channels*

G. Babnigg, M. Villereal, Susan R. Bowersox, 1997, The Journal of Biological Chemistry.

Functional significance of human trp1 and trp3 in store-operated Ca(2+) entry in HEK-293 cells.

G. Babnigg, X. Wu, M. Villereal, 2000, American journal of physiology. Cell physiology.

Cell-to-cell variation in store-operated calcium entry in HEK-293 cells and its impact on the interpretation of data from stable clones expressing exogenous calcium channels.

B. Heller, G. Babnigg, M L Villereal, 2000, Cell calcium.

Brucella Periplasmic Protein EipB Is a Molecular Determinant of Cell Envelope Integrity and Virulence

Jason X. Cheng, J. Herrou, S. Crosson, 2019, Journal of bacteriology.

Brucella periplasmic protein EipB is a molecular determinant of cell envelope integrity and virulence

Jason X. Cheng, J. Herrou, S. Crosson, 2019, bioRxiv.

Structures of teixobactin-producing nonribosomal peptide synthetase condensation and adenylation domains☆

A. Joachimiak, K. Tan, R. Jedrzejczak, 2020, Current Research in Structural Biology.

A microbial community growth model for dynamic phenotype predictions

D. Antonopoulos, G. Babnigg, A. Freiburger, 2022, bioRxiv.

Fixed-target serial crystallography at the Structural Biology Center

Ian T. Foster, A. Joachimiak, Youngchang Kim, 2022, bioRxiv.

Time-resolved β-lactam cleavage by L1 metallo-β-lactamase

V. Šrajer, G. Babnigg, R. Henning, 2022, Nature Communications.

Global proteomic analysis of the chromate response in Arthrobacter sp. strain FB24.

Dorothea K. Thompson, A. Konopka, C. Nakatsu, 2009, Journal of proteome research.

Primary structure-based function characterization of BRCT domain replicates in BRCA1.

O. Olopade, M. Schiffer, R. Wilton, 2006, Biochemical and Biophysical Research Communications - BBRC.

GELBANK: a database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes

Carol S. Giometti, GyoÈ rgy Babnigg, G. Babnigg, 2004, Nucleic Acids Res..

High-throughput protein purification and quality assessment for crystallization.

Hui Li, Gyorgy Babnigg, Youngchang Kim, 2011, Methods.

Novel α‐glucosidase from human gut microbiome: substrate specificities and their switch

A. Joachimiak, R. Wilton, K. Tan, 2010, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Conserved ABC Transport System Regulated by the General Stress Response Pathways of Alpha- and Gammaproteobacteria

J. Herrou, S. Crosson, Youngchang Kim, 2016, Journal of bacteriology.

New sub-family of lysozyme-like proteins shows no catalytic activity: crystallographic and biochemical study of STM3605 protein from Salmonella Typhimurium

A. Joachimiak, J. Adkins, J. Cort, 2013, Journal of Structural and Functional Genomics.

Structure of a novel antibacterial toxin that exploits elongation factor Tu to cleave specific transfer RNAs

A. Joachimiak, C. Hayes, C. Goulding, 2017, Nucleic acids research.

Title The CDI toxin of Yersinia kristensenii is a novel bacterial member of the RNase A superfamily Permalink

A. Joachimiak, C. Hayes, C. Goulding, 2017 .

Insight into the sporulation phosphorelay: Crystal structure of the sensor domain of Bacillus subtilis histidine kinase, KinD

H. Szurmant, A. Joachimiak, M. Schiffer, 2013, Protein science : a publication of the Protein Society.

Induction of Osmoadaptive Mechanisms and Modulation of Cellular Physiology Help Bacillus licheniformis Strain SSA 61 Adapt to Salt Stress

A. Joachimiak, G. Babnigg, S. Paul, 2015, Current Microbiology.

The Gel Electrophoresis Markup Language (GelML) from the Proteomics Standards Initiative

Henning Hermjakob, Gyorgy Babnigg, Andrew R Jones, 2010, Proteomics.

Extracytoplasmic PAS-Like Domains Are Common in Signal Transduction Proteins

H. Szurmant, A. Joachimiak, M. Schiffer, 2009, Journal of bacteriology.

A Structural Systems Biology Approach to High-Risk CG23 Klebsiella pneumoniae

A. Joachimiak, M. Endres, Z. Wawrzak, 2023, Microbiology resource announcements.

Functional Imaging of Microbial Interactions With Tree Roots Using a Microfluidics Setup

R. Wilton, M. Noirot-Gros, G. Babnigg, 2020, Frontiers in Plant Science.

Potent and Selective Covalent Inhibition of the Papain-like Protease from SARS-CoV-2

Russell B. Davidson, M. Head, A. Joachimiak, 2021, Research square.

Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 Å resolution

G. Phillips, A. Joachimiak, R. Yennamalli, 2015, Proteins.

WrpA Is an Atypical Flavodoxin Family Protein under Regulatory Control of the Brucella abortus General Stress Response System

J. Herrou, S. Crosson, Youngchang Kim, 2016, Journal of bacteriology.

A 2.08 Å resolution structure of HLB5, a novel cellulase from the anaerobic gut bacterium Parabacteroides johnsonii DSM 18315

A. Joachimiak, M. Hess, J. Mack, 2019, Protein science : a publication of the Protein Society.

Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor

Kelly P. Nevin, J. Yates, D. Lovley, 2007, Proteomics.

GH1-family 6-P-β-glucosidases from human microbiome lactic acid bacteria

A. Joachimiak, K. Tan, K. Michalska, 2013, Acta crystallographica. Section D, Biological crystallography.

Structural and functional characterization of microcin C resistance peptidase MccF from Bacillus anthracis.

K. Makarova, A. Joachimiak, K. Severinov, 2012, Journal of molecular biology.

The crystal structure of papain-like protease of SARS CoV-2

A. Joachimiak, M. Endres, Youngchang Kim, 2020 .

Global analysis of a "simple" proteome: Methanococcus jannaschii.

J. Yates, G. Olsen, C. Reich, 2002, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

Resistance to Enediyne Antitumor Antibiotics by Sequestration.

B. Shen, G. Phillips, A. Joachimiak, 2018, Cell chemical biology.

Molecular Glue Discovery: Current and Future Approaches.

D. Antonopoulos, G. Babnigg, Vivian Lu, 2023, Journal of medicinal chemistry.

The Role of Endogenous Human Trp4 in Regulating Carbachol-induced Calcium Oscillations in HEK-293 Cells*

G. Babnigg, Xiaoyan Wu, M. Villereal, 2002, The Journal of Biological Chemistry.

Differential Tyrosine Phosphorylation of Plasma Membrane Ca2+-ATPase and Regulation of Calcium Pump Activity by Carbachol and Bradykinin*

G. Babnigg, Xiaoyan Wu, M. Villereal, 2003, The Journal of Biological Chemistry.

Structural characterization of AtmS13, a putative sugar aminotransferase involved in indolocarbazole AT2433 aminopentose biosynthesis

G. Phillips, A. Joachimiak, M. Endres, 2015, Proteins.

Template‐based recognition of protein fold within the midnight and twilight zones of protein sequence similarity

M. Pirun, G. Babnigg, F. Stevens, 2005, Journal of molecular recognition : JMR.

Guidelines for reporting the use of gel electrophoresis in proteomics

Chris F. Taylor, Joachim Klose, Gyorgy Babnigg, 2008, Nature Biotechnology.

that to RNAs.

A. Joachimiak, M. Johnson, C. Hayes, 2017 .

Robotic pendant drop: containerless liquid for μs-resolved, AI-executable XPCS

Qingteng Zhang, G. Babnigg, Rory Butler, 2023, Light, science & applications.

RMI-chip: a microfluidics setup for functional imaging of microbial interactions with tree roots

R. Wilton, G. Babnigg, P. Noirot, 2018, bioRxiv.

A 2.08 Å resolution structure of HLB5, a novel cellulase from the anaerobic gut bacterium Parabacteroides johnsonii DSM 18315

A. Joachimiak, M. Hess, J. Mack, 2019, bioRxiv.

Engineering of increased L-Threonine production in bacteria by combinatorial cloning and machine learning

D. Antonopoulos, T. Brettin, B. Parrello, 2023, Metabolic engineering communications.

Insights into PG‐binding, conformational change, and dimerization of the OmpA C‐terminal domains from Salmonella enterica serovar Typhimurium and Borrelia burgdorferi

A. Joachimiak, J. Adkins, J. Cort, 2017, Protein science : a publication of the Protein Society.

Native Mass Spectrometry Dissects the Structural Dynamics of an Allosteric Heterodimer of SARS-CoV-2 Nonstructural Proteins.

G. Babnigg, Neeraj Kumar, N. Maltseva, 2024, Journal of the American Society for Mass Spectrometry.

Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2

Jerry M. Parks, Russell B. Davidson, D. Sterner, 2023, Nature Communications.

Global proteomic analysis of the chromate response in Arthrobacter sp. strain FB24.

Dorothea K. Thompson, A. Konopka, C. Nakatsu, 2009, Journal of proteome research.