J. Cole

发表

Role of the PAS Sensor Domains in the Bacillus subtilis Sporulation Kinase KinA

Glenn F. King, James L. Cole, B. Winnen, 2013, Journal of bacteriology.

Recognition of C-terminal amino acids in tubulin by pore loops in Spastin is important for microtubule severing

J. Cole, Katia J. Evans, B. Lauring, 2007, The Journal of cell biology.

Spectroscopic and chemical studies of the laccase trinuclear copper active site: geometric and electronic structure

J. Cole, E. Solomon, P. Clark, 1990 .

Spectroscopic and chemical studies of the ascorbate oxidase trinuclear copper active site: comparison to laccase

J. Cole, E. Solomon, L. Avigliano, 1991 .

Analysis of heterogeneous interactions.

James L Cole, J. Cole, 2004, Methods in enzymology.

Analysis of PKR structure by small-angle scattering.

James L Cole, S. Krueger, E. Anderson, 2009, Journal of molecular biology.

Crystal structure of unphosphorylated human PKR

Eric R. May, V. Robinson, J. Cole, 2019 .

Energetics of SecA dimerization.

J. Cole, Dongmei Yu, D. Kendall, 2011, Journal of molecular biology.

Inhibition of HIV-1 Ribonuclease H by a Novel Diketo Acid, 4-[5-(Benzoylamino)thien-2-yl]-2,4-dioxobutanoic Acid*

D. Hazuda, Michael D. Miller, J. Cole, 2003, The Journal of Biological Chemistry.

The S0 state of photosystem II induced by hydroxylamine: differences between the structure of the manganese complex in the S0 and S1 states determined by X-ray absorption spectroscopy.

A. McDermott, J. Cole, R. D. Britt, 1990, Biochemistry.

The flash number dependence of EPR Signal II decay as a probe for charge accumulation in Photosystem II

J. Cole, K. Sauer, 1987 .

Structure of the manganese complex of photosystem II upon removal of the 33-kilodalton extrinsic protein: an X-ray absorption spectroscopy study.

A. McDermott, J. Cole, R. D. Britt, 1987, Biochemistry.

Comparison of the structure of the manganese complex in the S1 and S2 states of the photosynthetic O2-evolving complex: an x-ray absorption spectroscopy study.

A. McDermott, J. Cole, R. D. Britt, 1987, Biochemistry.

Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP.

P. Gollnick, J. Cole, J. Lary, 2004, Journal of molecular biology.

Glycan specificity of the Vibrio vulnificus hemolysin lectin outlines evolutionary history of membrane targeting by a toxin family.

J. Cole, R. Olson, J. Lary, 2014, Journal of molecular biology.

Effect of Aggregation on the Hydrodynamic Properties of Bovine Serum Albumin

J. Cole, D. Kalonia, J. Kaur, 2017, Pharmaceutical Research.

Active Human Cytomegalovirus Protease Is a Dimer (*)

L. Kuo, P. Darke, D. Hall, 1996, The Journal of Biological Chemistry.

Characterization of human cytomegalovirus protease dimerization by analytical centrifugation.

J. Cole, 1996, Biochemistry.

Regulation of PKR by RNA: formation of active and inactive dimers.

J. Cole, B. Husain, Stephen J. Hesler, 2015, Biochemistry.

Oligomerization of RIG‐I and MDA5 2CARD domains

J. Cole, David J. Mouser, Cassie M Zerbe, 2019, Protein science : a publication of the Protein Society.

NADH/NAD+ binding and linked tetrameric assembly of the oncogenic transcription factors CtBP1 and CtBP2

W. Royer, J. Cole, H. Erlandsen, 2022, FEBS letters.

HU Binding to DNA: Evidence for Multiple Complex Formation and DNA Bending†

J. Cole, M. Hawkins, I. Mukerji, 2001 .

Activation of PKR by short stem–loop RNAs containing single-stranded arms

J. Cole, J. Lary, C. J. Wong, 2016, RNA.

X-Ray Absorption Spectroscopy of Manganese and Iron in the Photosynthetic Apparatus

A. McDermott, J. Cole, R. D. Britt, 1987 .

Chemical and Spectroscopic Definition of the Peroxide-Level Intermediate in the Multicopper Oxidases: Relevance to the Catalytic Mechanism of Dioxygen Reduction to Water

K. Hodgson, J. Cole, W. Shin, 1996 .

Structural analysis of adenovirus VAI RNA defines the mechanism of inhibition of PKR.

J. Cole, C. J. Wong, Katherine D Launer-Felty, 2015, Biophysical journal.

Domain stabilities in protein kinase R (PKR): evidence for weak interdomain interactions.

E. Anderson, J. Cole, 2008, Biochemistry.

Defining the Escherichia coli SecA Dimer Interface Residues through In Vivo Site-Specific Photo-Cross-Linking

J. Cole, Dongmei Yu, D. Kendall, 2013, Journal of bacteriology.

Identification of new inhibitors of protein kinase R guided by statistical modeling.

J. Griffin, C. Nathan, E. Anderson, 2011, Bioorganic & medicinal chemistry letters.

Solution oligomerization of the rev protein of HIV-1: implications for function.

L. Kuo, J. Shafer, J. Cole, 1993, Biochemistry.

Domain Stabilities in PKR: Evidence for Weak Interdomain Interactions

E. Anderson, J. Cole, 2009 .

HIV-1 integrase inhibitors that compete with the target DNA substrate define a unique strand transfer conformation for integrase.

Amy S. Espeseth, D. Hazuda, A. Espeseth, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Analytical ultracentrifugation: sedimentation velocity and sedimentation equilibrium.

James L Cole, T. Laue, J. Cole, 2008, Methods in cell biology.

The S3 state of photosystem II: differences between the structure of the manganese complex in the S2 and S3 states determined by X-ray absorption spectroscopy.

K. Wieghardt, A. McDermott, J. Cole, 1990, Biochemistry.

Characterization of the manganese O2-evolving complex and the iron-quinone acceptor complex in photosystem II from a thermophilic cyanobacterium by electron paramagnetic resonance and X-ray absorption spectroscopy.

A. McDermott, J. Cole, R. D. Britt, 1988, Biochemistry.

Spectroscopic characterization of the peroxide intermediate in the reduction of dioxygen catalyzed by the multicopper oxidases

J. Cole, E. Solomon, D. Ballou, 1991 .

Reactivity of the laccase trinuclear copper active site with dioxygen: an x-ray absorption edge study

K. Hodgson, J. Cole, E. Solomon, 1990 .

Assignment of the g = 4.1 EPR signal to manganese in the S2 state of the photosynthetic oxygen-evolving complex: an X-ray absorption edge spectroscopy study.

A. McDermott, J. Cole, R. D. Britt, 1987, Biochimica et biophysica acta.

Molecular and biochemical characterization of a cytokinin oxidase from maize.

R. O. Morris, T. Esparza, J. Cole, 2001, Plant physiology.

The use of analytical sedimentation velocity to extract thermodynamic linkage.

J. Correia, J. Cole, W. Stafford, 2011, Biophysical chemistry.

Analysis of SecA Dimerization in Solution

Eric R. May, M. Gross, Jun Zhang, 2014, Biochemistry.

Complex of NS3 protease and NS4A peptide of BK strain hepatitis C virus: A 2.2 Å resolution structure in a hexagonal crystal form

Ying Li, Zhongguo Chen, Youwei Yan, 1998, Protein science : a publication of the Protein Society.

Stoichiometry of 2′,5′-Oligoadenylate-induced Dimerization of Ribonuclease L

L. Kuo, J. Cole, S. Carroll, 1996, The Journal of Biological Chemistry.

Activation of RNase L by 2′,5′-Oligoadenylates

L. Kuo, J. Cole, J. Gehman, 1997, The Journal of Biological Chemistry.

Mechanism of PKR Activation by dsRNA.

James L Cole, E. Anderson, J. Cole, 2008, Journal of molecular biology.

Approaches to high-volume screening assays of viral polymerases and related proteins.

J. Cole, 1996, Methods in enzymology.

Analysis of PKR-RNA interactions by sedimentation velocity.

J. Cole, C. J. Wong, Katherine D Launer-Felty, 2011, Methods in enzymology.

Analysis of PKR activation using analytical ultracentrifugation.

J. Cole, 2010, Macromolecular bioscience.

RNA dimerization promotes PKR dimerization and activation.

P. Bevilacqua, Xiaofeng Zheng, Laurie A. Heinicke, 2009, Journal of molecular biology.

Analysis of Monomeric and Dimeric Phosphorylated Forms of PKR

X. Yao, E. Anderson, J. Cole, 2009 .

The Role of Human Dicer-dsRBD in Processing Small Regulatory RNAs

S. Showalter, J. Cole, Kaycee A. Quarles, 2012, PloS one.

Regulation of PKR by Epstein-Barr virus EBER1 RNA.

J. Cole, Cassie M Zerbe, 2020, Biochemistry.

Domain Architecture and Biochemical Characterization of Vertebrate Mcm10*

B. Eichman, J. Walter, J. Cole, 2008, Journal of Biological Chemistry.

The labelling of an axonal membrane component with 4-(N-maleimido) benzyltrimethylammonium, a reagent capable of affinity-labelling the alpha-subunit of the nicotinic acetylcholine receptor.

J. Cole, H. Mautner, M. Belew, 1983, Biochemical and biophysical research communications.

T cell immunoglobulin mucin-3 crystal structure reveals a galectin-9-independent ligand-binding surface.

Steven C Almo, Haiteng Deng, Alexander Fedorov, 2007, Immunity.

The tetramer structure of the Nervy homology two domain, NHR2, is critical for AML1/ETO's activity.

Z. Dauter, J. Gaudet, J. Bushweller, 2006, Cancer cell.

Activation of PKR: an open and shut case?

J. Cole, 2007, Trends in biochemical sciences.

Unactivated PKR exists in an open conformation capable of binding nucleotides.

James L Cole, D. Erie, J. Cole, 2006, Biochemistry.

Cytokinesis in Trypanosoma brucei relies on an orphan kinesin that dynamically crosslinks microtubules

J. Cole, Thomas E. Sladewski, N. Billington, 2023, Current Biology.

Probing interdomain linkers and protein supertertiary structure in vitro and in live cells with fluorescent protein resonance energy transfer.

F. Ding, Sujit Basak, J. Cole, 2020, Journal of molecular biology.

Defining how ubiquitin receptors hHR23a and S5a bind polyubiquitin.

J. Cole, J. Lary, K. Walters, 2007, Journal of molecular biology.

Heparin activates PKR by inducing dimerization.

E. Anderson, J. Cole, J. Lary, 2011, Journal of molecular biology.

proteinstransduction by heme-containing PAS-domain

S. Lee, M. Gilles-Gonzalez, W. Lubitz, 2015 .

Mechanism of PKR activation: dimerization and kinase activation in the absence of double-stranded RNA.

J. Cole, J. Lary, P. Lemaire, 2005, Journal of molecular biology.

Conformational dynamics of the Rpt6 ATPase in proteasome assembly and Rpn14 binding.

Soyeon Park, J. Cole, J. Lary, 2013, Structure.

Interaction of PKR with single-stranded RNA

J. Cole, C. Mayo, Christopher B. Mayo, 2017, Scientific Reports.

Elucidation of Basic Mechanistic and Kinetic Properties of Influenza Endonuclease Using Chemically Synthesized RNAs (*)

R. Dempski, L. Kuo, P. Darke, 1996, The Journal of Biological Chemistry.

Analytical ultracentrifugation as a contemporary biomolecular research tool.

J L Cole, J C Hansen, J. Cole, 1999, Journal of biomolecular techniques : JBT.

HU binding to DNA: evidence for multiple complex formation and DNA bending.

J. Cole, M. Hawkins, I. Mukerji, 2001, Biochemistry.

Global analysis of non-specific protein-nucleic interactions by sedimentation equilibrium.

J. Cole, Jason W Ucci, 2004, Biophysical chemistry.

Magnesium-dependent interaction of PKR with adenovirus VAI.

A. Wahid, J. Cole, G. Conn, 2010, Journal of molecular biology.

Reversible and irreversible effects of alkaline pH on Photosystem II electron-transfer reactions.

J. Cole, M. Boska, N. Blough, 1986, Biochimica et biophysica acta.

Contribution of dsRBD2 to PKR Activation

J. Cole, Stephen J. Hesler, Matthew Angeliadis, 2021, ACS omega.

Structure of the s5a:k48-linked diubiquitin complex and its interactions with rpn13.

Aydin Haririnia, James L Cole, D. Fushman, 2009, Molecular cell.

Domain interactions in adenovirus VAI RNA mediate high-affinity PKR binding.

J. Cole, Katherine D Launer-Felty, 2014, Journal of molecular biology.

NTB-A receptor crystal structure: insights into homophilic interactions in the signaling lymphocytic activation molecule receptor family.

A. Fedorov, E. Fedorov, S. Almo, 2006, Immunity.

Analysis of high-affinity binding of protein kinase R to double-stranded RNA.

J. Cole, I. Mukerji, Bushra Husain, 2012, Biochemistry.

Characterization of the neuron-specific L1-CAM cytoplasmic tail: naturally disordered in solution it exercises different binding modes for different adaptor proteins.

L. Deshmukh, O. Vinogradova, J. Cole, 2008, Biochemistry.

Activation of RNase L by 2′,5′-Oligoadenylates

L. Kuo, J. Cole, S. Carroll, 1997, The Journal of Biological Chemistry.

Role of the Interdomain Linker in RNA-Activated Protein Kinase Activation.

J. Cole, C. Mayo, Bushra Husain, 2016, Biochemistry.

Structure of CD84 provides insight into SLAM family function

V. Malashkevich, A. Fedorov, E. Fedorov, 2007, Proceedings of the National Academy of Sciences.

Defining how ubiquitin receptors hHR23a and S5a bind polyubiquitin.

J. Cole, J. Lary, K. Walters, 2007, Journal of molecular biology.

Mechanism of interaction of the double-stranded RNA (dsRNA) binding domain of protein kinase R with short dsRNA sequences.

A. Alexandrescu, J. Cole, Yumiko Kobayashi, 2007, Biochemistry.

The Relationship between Glycan Binding and Direct Membrane Interactions in Vibrio cholerae Cytolysin, a Channel-forming Toxin*

J. Cole, S. De, R. Olson, 2015, The Journal of Biological Chemistry.

Design of High-Affinity Metal-Controlled Protein Dimers.

B. Stec, T. Huxford, J. Love, 2019, Biochemistry.

Defining the Escherichia coli SecA Dimer Interface Residues through In Vivo Site-Specific Photo-Cross-Linking

J. Cole, Dongmei Yu, D. Kendall, 2013, Journal of bacteriology.

Analysis of PKR activation using analytical ultracentrifugation.

J. Cole, 2010, Macromolecular bioscience.

Analytical ultracentrifugation: sedimentation velocity and sedimentation equilibrium.

T. Laue, J. Cole, J. Lary, 2008, Methods in cell biology.

Structural Basis of Protein Kinase R Autophosphorylation.

Eric R. May, V. Robinson, J. Cole, 2019, Biochemistry.