J. Manak

发表

Mutation of serum response factor phosphorylation sites and the mechanism by which its DNA-binding activity is increased by casein kinase II

J. Manak, R. Prywes, 1991, Molecular and cellular biology.

The Dm-Myb Oncoprotein Contributes to Insulator Function and Stabilizes Repressive H3K27me3 PcG Domains

K. M. Nukala, J. Manak, Juan F. Santana, 2020, Cell reports.

Temporal Coordination of Gene Networks by Zelda in the Early Drosophila Embryo

Stephen Butcher, J. Robert Manak, C. Rushlow, 2011, PLoS genetics.

Sex-specific chromatin landscapes in an ultra-compact chordate genome

J. Manak, A. Long, S. Butcher, 2017, Epigenetics & Chromatin.

Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells.

Terry Speed, David M MacAlpine, T. Speed, 2007, Genes & development.

Mutation of the Drosophila homologue of the Myb protooncogene causes genomic instability

J. Lipsick, J. Manak, N. Mitiku, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Biological function of unannotated transcription during the early development of Drosophila melanogaster

Srinka Ghosh, Philipp Kapranov, Antonio Piccolboni, 2006, Nature Genetics.

Mutation of orthologous prickle genes causes a similar epilepsy syndrome in flies and humans

J. Robert Manak, Alexander G. Bassuk, T. Kitamoto, 2016, Annals of clinical and translational neurology.

The Ecoresponsive Genome of Daphnia pulex

Todd H. Oakley, Abraham E. Tucker, Rupali Patwardhan, 2011, Science.

TFAP2 paralogs regulate melanocyte differentiation in parallel with MITF

W. Pavan, R. Sompallae, J. Manak, 2017, PLoS genetics.

Target specificity of the Candida albicans Efg1 regulator

D. Soll, J. Manak, J. Ernst, 2011, Molecular microbiology.

Spatial regulation of microRNA gene expression in the Drosophila embryo.

M. Levine, R. Zinzen, V. Sementchenko, 2005, Proceedings of the National Academy of Sciences of the United States of America.

PRICKLE1 Interaction with SYNAPSIN I Reveals a Role in Autism Spectrum Disorders

Vinit B. Mahajan, J. Robert Manak, Heather C. Mefford, 2013, PloS one.

Comprehensive identification of Drosophila dorsal–ventral patterning genes using a whole-genome tiling array

I. Bell, D. Nix, M. Levine, 2006, Proceedings of the National Academy of Sciences.

Mutations in prickle orthologs cause seizures in flies, mice, and humans.

J. Rosenfeld, L. Shaffer, M. Scott, 2011, American journal of human genetics.

Seizures Are Regulated by Ubiquitin-specific Peptidase 9 X-linked (USP9X), a De-Ubiquitinase

G. Carvill, I. Scheffer, H. Mefford, 2015, PLoS genetics.

Accumulating evidence for a genetic link between epilepsy and neurodegenerative disease

J. Manak, 2015 .

Planar Cell Polarity and the Cell Biology of Nervous System Development and Disease

J. Manak, 2017 .

Phosphorylation of serum response factor by casein kinase II: evidence against a role in growth factor regulation of fos expression.

J. Manak, R. Prywes, 1993, Oncogene.

Recent advances in understanding the regulation of the DNA-binding specificity of gene regulatory proteins may help explain how similar proteins can have diverse effects.

M. Scott, J. Manak, 1993 .

Able assistants for homeodomain proteins

M. Scott, J. Manak, 1993, Current Biology.

1 ADDITONAL FILE 1 : Supplemental Results Sex-specific chromatin landscapes in an ultracompact chordate genome

J. Manak, A. Long, S. Butcher, 2016 .

Abnormal larval neuromuscular junction morphology and physiology in Drosophila prickle isoform mutants with known axonal transport defects and adult seizure behavior

J. Manak, Chun-Fang Wu, Salleh N. Ehaideb, 2022, Journal of neurogenetics.

Benign-Ex: Delineating Regions of the Human Genome Benign to Copy Number Variation.

B. Darbro, J. Manak, H. Major, 2022, medRxiv.

DISCRIMINATOR: Assigning Cohort-Wide Provisional Pathogenicity Classifications to CNVs

B. Darbro, J. Manak, H. Major, 2022, medRxiv.

Genome-wide analysis of copy number variation in humans with cleft lip and/or cleft palate identifies COBLL1, RIC1, and ARHGEF38 as clefting genes.

Lisa A. Lansdon, K. Mohlke, S. Girirajan, 2022, American journal of human genetics.

Genomic and proteomic studies on the effects of the insect growth regulator diflubenzuron in the model beetle species Tribolium castaneum.

Susan J. Brown, Hee Shin Kim, J. Manak, 2012, Insect biochemistry and molecular biology.

The insulator protein Suppressor of Hairy-wing is an essential transcriptional repressor in the Drosophila ovary

J. Manak, P. Geyer, Ryan M. Baxley, 2013, Development.

Transcriptional profiling of predator-induced phenotypic plasticity in Daphnia pulex

Linda C. Weiss, R. Tollrian, J. Manak, 2015, Frontiers in Zoology.

A class act: conservation of homeodomain protein functions.

M. Scott, J. Manak, 1994, Development (Cambridge, England). Supplement.

Copy number variation analysis implicates the cell polarity gene glypican 5 as a human spina bifida candidate gene.

A. Bassuk, L. Muthuswamy, C. Yung, 2013, Human molecular genetics.

Functional Enhancers at the Gene-Poor 8q24 Cancer-Linked Locus

D. Reich, P. Kantoff, G. Coetzee, 2009, PLoS genetics.

The 8q24 cancer risk variant rs6983267 demonstrates long-range interaction with MYC in colorectal cancer

Christopher A. Haiman, Li Jia, Matthew L. Freedman, 2009, Nature Genetics.

Downregulation of oxidative stress-mediated glial innate immune response suppresses seizures in a fly epilepsy model

A. Bassuk, K. M. Nukala, J. Manak, 2023, Cell reports.

Expression of Human Paraoxonase 1 Decreases Superoxide Levels and Alters Bacterial Colonization in the Gut of Drosophila melanogaster

Emma E. Hornick, J. Manak, D. Stoltz, 2012, PloS one.

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

Frédéric Delsuc, Boris Lenhard, Hans Lehrach, 2010, Science.

Animal-specific C-terminal domain links myeloblastosis oncoprotein (Myb) to an ancient repressor complex

J. Lipsick, J. Manak, L. Andrejka, 2011, Proceedings of the National Academy of Sciences.

Functional evolution of the Myb oncogene family.

J. Lipsick, J. Manak, N. Mitiku, 2001, Blood cells, molecules & diseases.

Interferon Regulatory Factor 6 promotes differentiation of the periderm by activating expression of Grainyhead-like 3

T. Mansour, D. Houston, D. Wagner, 2012, The Journal of investigative dermatology.

Identification of Isthmin 1 as a Novel Clefting and Craniofacial Patterning Gene in Humans

Lisa A. Lansdon, J. Murray, D. Houston, 2017, Genetics.

Candidate modifier genes for immune function in 22q11.2 deletion syndrome

B. Darbro, J. Manak, L. Desjardin, 2019, Molecular genetics & genomic medicine.

Trans-splicing and operons in metazoans: translational control in maternally regulated development and recovery from growth arrest.

B. Lenhard, J. Manak, A. Long, 2015, Molecular biology and evolution.

OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica

Boris Lenhard, Gemma B. Danks, Patrick Wincker, 2012, Nucleic Acids Res..

Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics

F. Denoeud, R. Metpally, J. Manak, 2012, BMC Genomics.

Pervasive genetic interactions modulate neurodevelopmental defects of the autism-associated 16p11.2 deletion in Drosophila melanogaster

S. Girirajan, J. Badano, Qingyu Wang, 2018, Nature Communications.

Multiculturalism is good for flies, too

J. Manak, 2018, PLoS genetics.

Role for a Drosophila Myb-containing protein complex in site-specific DNA replication

M. Botchan, J. Lipsick, J. Manak, 2002, Nature.

Expanding the genetic and phenotypic spectrum of popliteal pterygium disorders

S. Kapoor, J. Murray, M. Cunningham, 2015, American journal of medical genetics. Part A.

BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum

Doina Caragea, Jing Xia, Stephen Butcher, 2009, Nucleic Acids Res..

DNA copy number variations in children with vesicoureteral reflux and urinary tract infections

J. Manak, Zi-Hua Wang, I. Hakker, 2019, PloS one.

Stability and Dynamics of Polycomb Target Sites in Drosophila Development

J. Robert Manak, Boris Adryan, Steven Russell, 2008, PLoS genetics.

p53-mediated neurodegeneration in the absence of the nuclear protein Akirin2

R. Burgess, J. Weiner, J. Michaelson, 2021, bioRxiv.

Polymorphisms in α-Defensin-Encoding DEFA1A3 Associate with Urinary Tract Infection Risk in Children with Vesicoureteral Reflux.

J. Manak, D. Cohen, N. Shaikh, 2016, Journal of the American Society of Nephrology : JASN.

A Gene Implicated in Activation of Retinoic Acid Receptor Targets Is a Novel Renal Agenesis Gene in Humans

S. Murray, B. Darbro, L. Sunde, 2017, Genetics.

The Juvenile Phase of Maize Sees Upregulation of Stress-Response Genes and Is Extended by Exogenous Jasmonic Acid1

J. Manak, Chi-Lien Cheng, E. Irish, 2016, Plant Physiology.

Microarray-Based Capture of Novel Expressed Cell Type–Specific Transfrags (CoNECT) to Annotate Tissue-Specific Transcription in Drosophila melanogaster

Heather A. Halvensleben, T. Richmond, H. Doddapaneni, 2012, G3: Genes | Genomes | Genetics.

Casein kinase II enhances the DNA binding activity of serum response factor.

J. Manak, R. Prywes, R. Kris, 1990, Genes & development.

A Mismatch EndoNuclease Array-Based Methodology (MENA) for Identifying Known SNPs or Novel Point Mutations

J. M. Comeron, J. Manak, D. Eberl, 2016, Microarrays.

Genome-wide copy number variation analysis of a Branchio-oto-renal syndrome cohort identifies a recombination hotspot and implicates new candidate genes

B. Darbro, J. Manak, P. Brophy, 2013, Human Genetics.

Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes.

G. Helt, H. Tammana, T. Gingeras, 2006, Cold Spring Harbor symposia on quantitative biology.

The Dm-Myb Oncoprotein Coordinates Higher-Order Chromatin Structure and Stabilizes Facultative Heterochromatin

J. Manak, Juan F. Santana, A. Long, 2019, SSRN Electronic Journal.

Using an aquatic model, Xenopus laevis, to uncover the role of chromodomain 1 in craniofacial disorders

Lisa A. Lansdon, J. Murray, B. Darbro, 2020, Genesis.

Regulation of a decapentaplegic midgut enhancer by homeotic proteins.

M. Scott, J. Manak, M P Scott, 1994, Development.

prickle modulates microtubule polarity and axonal transport to ameliorate seizures in flies

J. Axelrod, D. Gubb, A. Bassuk, 2014, Proceedings of the National Academy of Sciences.

Mutations in Extracellular Matrix Genes NID1 and LAMC1 Cause Autosomal Dominant Dandy–Walker Malformation and Occipital Cephaloceles

Alberto Maria Segre, J. Cremer, A. Bassuk, 2013, Human mutation.

Tgfβ signaling acts on a Hox response element to confer specificity and diversity to Hox protein function

M. Scott, A. Fabre, Y. Graba, 2003, Development.

Genetic Analysis and Phenotypic Staging of Autosomal Dominant Neovascular Inflammatory Vitreoretinopathy

V. Sheffield, A. Bassuk, V. Mahajan, 2011 .

Abnormal larval neuromuscular junction morphology and physiology in Drosophila Prickle isoform mutants with defective axonal transport and adult seizure behavior

J. Manak, Chun-Fang Wu, Salleh N. Ehaideb, 2022, bioRxiv.

ESCRT-II/Vps25 constrains digit number by endosome-mediated selective modulation of FGF-SHH signaling.

K. Anderson, H. Weinstein, M. Depew, 2014, Cell reports.

ESCRT-II / Vps 25 Constrains D igit Number by Endosome-Mediated Selective Modulation of FGF-SHH Signaling Graphical

K. Anderson, H. Weinstein, M. Depew, 2014 .

Pervasive genetic interactions modulate neurodevelopmental defects of the autism-associated 16p11.2 deletion in Drosophila melanogaster

S. Girirajan, J. Badano, Qingyu Wang, 2018, Nature Communications.

Sex-specific chromatin landscapes in an ultra-compact chordate genome

J. Manak, A. Long, S. Butcher, 2017, Epigenetics & Chromatin.

ChIP-Chip Designs to Interrogate the Genome of Xenopus Embryos for Transcription Factor Binding and Epigenetic Regulation

R. Green, H. Stunnenberg, S. V. van Heeringen, 2010, PloS one.

Loss of Drosophila Myb interrupts the progression of chromosome condensation

J. Lipsick, J. Manak, L. Andrejka, 2007, Nature Cell Biology.

Anti-inflammatory Therapy Protects Spiral Ganglion Neurons After Aminoglycoside Antibiotic-Induced Hair Cell Loss

S. Green, J. Manak, A. Pieper, 2021, Neurotherapeutics.

DNA-binding activities of the Drosophila melanogaster even-skipped protein are mediated by its homeo domain and influenced by protein context

M. Levine, T. Hoey, J. Manak, 1988, Molecular and cellular biology.

Anti-inflammatory compounds improve spiral ganglion neuron survival after aminoglycoside-induced hair cell loss in rats

S. Green, J. Manak, A. Pieper, 2021, bioRxiv.

Characterization of prickle isoform-specific pk pk1 and pk sple1 mutations in Drosophila melanogaster

J. Manak, Anthony J. Lilienthal, M. Parida, 2022, microPublication biology.

The 8q24 cancer risk variant rs6983267 demonstrates long-range interaction with MYC in colorectal cancer

G. Coetzee, B. Frenkel, C. Haiman, 2009, Nature Genetics.

Supplemental Figures S 1-13 Sex-specific chromatin landscapes in an ultracompact chordate genome

J. Manak, A. Long, S. Butcher, 2016 .