Di Wu

发表

A bivariate zero-inflated negative binomial model and its applications to biomedical settings

J. Preisser, Hunyong Cho, Chuwen Liu, 2020, bioRxiv.

Dimensionality reduction by UMAP reinforces sample heterogeneity analysis in bulk transcriptomic data

Y. Duan, Di Wu, Yuchen Yang, 2021, bioRxiv.

A robust and powerful two‐step testing procedure for local ancestry adjusted allelic association analysis in admixed populations

A. Reiner, E. Lange, Yun Li, 2018, Genetic epidemiology.

FIREcaller: Detecting frequently interacting regions from Hi-C data

B. Ren, Yun Li, Ming Hu, 2020, Computational and structural biotechnology journal.

Cohort Profile: ZOE 2.0—A Community-Based Genetic Epidemiologic Study of Early Childhood Oral Health

K. North, J. Preisser, G. Slade, 2020, International journal of environmental research and public health.

Rad18 mediates specific mutational signatures and shapes the genomic landscape of carcinogen-induced tumors in vivo

Lisle E. Mose, J. Parker, C. Vaziri, 2021, NAR cancer.

Transcriptional Regulation of CD40 Expression by 4 Ribosomal Proteins via a Functional SNP on a Disease-Associated CD40 Locus

L. Moreland, Di Wu, Gang Li, 2020, Genes.

Derivation and Validation of the Periodontal and Tooth Profile Classification System for Patient Stratification

J. Preisser, J. Beck, Di Wu, 2017, Journal of periodontology.

TWO‐SIGMA: A novel two‐component single cell model‐based association method for single‐cell RNA‐seq data

Yun Li, Yan Li, Ming Hu, 2020, Genetic epidemiology.

TWO-SIGMA: a novel TWO-component SInGle cell Model-based Association method for single-cell RNA-seq data

Yun Li, Yan Li, Ming Hu, 2019, bioRxiv.

DCAF1 regulates Treg senescence via the ROS axis during immunological ageing.

Y. Wan, Junnian Zheng, Di Wu, 2020, The Journal of clinical investigation.

The Supragingival Biofilm in Early Childhood Caries: Clinical and Laboratory Protocols and Bioinformatics Pipelines Supporting Metagenomics, Metatranscriptomics, and Metabolomics Studies of the Oral Microbiome.

D. Shungin, S. Ramamoorthy, Hunyong Cho, 2019, Methods in molecular biology.

Comprehensive evaluation of methods for differential expression analysis of metatranscriptomics data

M. Love, J. Roach, Hunyong Cho, 2022, bioRxiv.

Differential Expression Analysis for Metatranscriptomics with Sample-Paired Metagenomics Data

Di Wu, Binghao Yan, 2022, bioRxiv.

Periodontal profile classes predict periodontal disease progression and tooth loss

J. Preisser, J. Beck, Di Wu, 2018, Journal of periodontology.

High Throughput Identification of Non-Coding Functional SNPs via Type IIS Enzyme Restriction

Y. Okada, S. Raychaudhuri, H. Westra, 2018, Nature Genetics.

The bacterial microbiome and metabolome in caries progression and arrest

B. Paster, A. Valente, Tsute Chen, 2021, Journal of oral microbiology.

CXCR5+ follicular cytotoxic T cells control viral infection in B cell follicles

Di Wu, Di Yu, Peng Wang, 2016, Nature Immunology.

A bivariate zero-inflated negative binomial model and its applications to biomedical settings

J. Preisser, Hunyong Cho, Chuwen Liu, 2021, bioRxiv.

Machine Learning and Deep Learning in Genetics and Genomics

Gang Li, Yun Li, Hunyong Cho, 2021, Machine Learning in Dentistry.

A sequential methodology for the rapid identification and characterization of breast cancer-associated functional SNPs

J. Cui, S. Oesterreich, Di Wu, 2020, Nature Communications.

An Automated Machine Learning Classifier for Early Childhood Caries.

Hunyong Cho, Di Wu, K. Divaris, 2021, Pediatric dentistry.

Post-GWAS functional studies reveal an RA-associated CD40-induced NF-kB signal transduction and transcriptional regulation network targeted by class II HDAC inhibitors

J. Cui, L. Moreland, Di Wu, 2021, Human molecular genetics.

RAS P21 Protein Activator 3 (RASA3) Specifically Promotes Pathogenic T Helper 17 Cell Generation by Repressing T‐Helper‐2‐Cell‐Biased Programs

Xian Chen, Ling Xie, Y. Wan, 2018, Immunity.

Improved Metabolite Prediction Using Microbiome Data-Based Elastic Net Models

F. Zou, J. Roach, Hunyong Cho, 2021, bioRxiv.

Clinical Utility of a STAT3-Regulated miRNA-200 Family Signature with Prognostic Potential in Early Gastric Cancer

G. Goodall, A. Tsykin, P. Tan, 2018, Clinical Cancer Research.

Inferring Regulatory Networks From Mixed Observational Data Using Directed Acyclic Graphs

Karen L. Mohlke, Li Dong, Di Wu, 2020, Frontiers in Genetics.

Periodontitis and Risk of Diabetes in the Atherosclerosis Risk In Communities (ARIC) Study: A BMI-modified Association.

J. Beck, Di Wu, E. Selvin, 2021, The Journal of clinical endocrinology and metabolism.

TWO-SIGMA-G: A New Competitive Gene Set Testing Framework for scRNA-seq Data Accounting for Inter-Gene and Cell-Cell Correlation

Yun Li, J. Wrobel, Ming Hu, 2021, bioRxiv.

BZINB Model-Based Pathway Analysis and Module Identification Facilitates Integration of Microbiome and Metabolome Data

Hunyong Cho, Chuwen Liu, Di Wu, 2023, Microorganisms.

BZINB model-based pathway analysis and module identification facilitates integration of microbiome and metabolome data

Hunyong Cho, Chuwen Liu, Di Wu, 2023, bioRxiv.

The Novel ASIC2 Locus Is Associated with Severe Gingival Inflammation

K. North, J. Beck, Di Wu, 2016, JDR clinical and translational research.