Diego Diez

发表

Systems biology approaches and pathway tools for investigating cardiovascular disease.

Susumu Goto, Minoru Kanehisa, Shuichi Kawashima, 2009, Molecular bioSystems.

The use of network analyses for elucidating mechanisms in cardiovascular disease.

A. Gabrielsen, S. Goto, J. Haeggström, 2010, Molecular bioSystems.

Network analysis in the investigation of chronic respiratory diseases. From basics to application.

Craig E Wheelock, Diego Diez, A. Agustí, 2014, American journal of respiratory and critical care medicine.

Systems Biology Approaches for Investigating the Relationship Between Lipids and Cardiovascular Disease

S. Goto, J. Haeggström, C. Wheelock, 2011 .

The Repertoires of Ubiquitinating and Deubiquitinating Enzymes in Eukaryotic Genomes

Diego Miranda-Saavedra, Diego Diez, Andrew Paul Hutchins, 2013, Molecular biology and evolution.

A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data

A. Vandenbon, Diego Diez, 2019, Nature Communications.

singleCellHaystack: Finding surprising genes in single-cell transcriptome data

A. Vandenbon, Diego Diez, 2019 .

Methods for sequence and structural analysis of B and T cell receptor repertoires

Daron M. Standley, Diego Diez, John Rozewicki, 2020, Computational and Structural Biotechnology Journal.

singleCellHaystack: Finding surprising genes in 2-dimensional representations of single cell transcriptome data

A. Vandenbon, Diego Diez, 2019 .

Exploring the interactions of the RAS family in the human protein network and their potential implications in RAS-directed therapies

J. A. Ranea, I. Morilla, Anibal Bueno, 2016, Oncotarget.

varDB: a database of antigenic variant sequences--current status and future prospects.

M. Kanehisa, S. Goto, M. Wahlgren, 2010, Acta tropica.

Systematic identification of transcriptional regulatory modules from protein–protein interaction networks

Diego Miranda-Saavedra, Diego Diez, Andrew Paul Hutchins, 2013, Nucleic acids research.

Lack of action of exogenously administered T3 on the fetal rat brain despite expression of the monocarboxylate transporter 8.

J. Bernal, Diego Diez, G. Morreale de Escobar, 2011, Endocrinology.

Thyroid hormone-regulated mouse cerebral cortex genes are differentially dependent on the source of the hormone: a study in monocarboxylate transporter-8- and deiodinase-2-deficient mice.

J. Bernal, Diego Diez, S. Refetoff, 2010, Endocrinology.

Intercellular crosstalk in adult dental pulp is mediated by heparin-binding growth factors Pleiotrophin and Midkine

D. Standley, Diego Diez, S. Imazato, 2022, bioRxiv.

Thyroid hormone regulators in human cerebral cortex development.

J. Bernal, Diego Diez, B. Morte, 2022, The Journal of endocrinology.

A universal differential expression prediction tool for single-cell and spatial genomics data

A. Vandenbon, Diego Diez, 2022, bioRxiv.

A novel affinity-based method for the isolation of highly purified extracellular vesicles

Diego Diez, W. Nakai, Takeshi Yoshida, 2016, Scientific Reports.

Tools for investigating mechanisms of antigenic variation: new extensions to varDB.

Susumu Goto, Minoru Kanehisa, C Nelson Hayes, 2009, Genome informatics. International Conference on Genome Informatics.

Thyroid hormone action in the adult brain: gene expression profiling of the effects of single and multiple doses of triiodo-L-thyronine in the rat striatum.

A. Pinchera, J. Bernal, G. D. de Escobar, 2008, Endocrinology.

Unbiased integration of single cell transcriptomes using a linear hybrid method

Diego Diez, Lopez Ml, Shunsuke Teraguchi, 2021 .

Unbiased integration of single cell transcriptome replicates

D. Standley, Diego Diez, Shunsuke Teraguchi, 2021, bioRxiv.

The IL-10/STAT3-mediated anti-inflammatory response: recent developments and future challenges

D. Miranda-Saavedra, A. Hutchins, Diego Diez, 2013, Briefings in functional genomics.

Genomic and computational approaches to dissect the mechanisms of STAT3’s universal and cell type-specific functions

D. Miranda-Saavedra, A. Hutchins, Diego Diez, 2013, JAK-STAT.

Evolutionary expansion of the Ras switch regulatory module in eukaryotes

J. A. Ranea, F. Sánchez-Jiménez, Diego Diez, 2011, Nucleic acids research.

The IL-10 / STAT 3-mediated anti-inflammatory response : recent developments and future challenges

D. Miranda-Saavedra, A. Hutchins, Diego Diez, 2013 .

Codelink: an R package for analysis of GE healthcare gene expression bioarrays

Ana Dopazo, Diego Diez, Rebeca Alvarez, 2007, Bioinform..

Neuronal exosomes facilitate synaptic pruning by up-regulating complement factors in microglia

Diego Diez, Ji-hoon Song, R. Hanayama, 2015, Scientific Reports.

Advances and Applications in Bioinformatics and Chemistry Dovepress Mapping Circulating Serum Mirnas to Their Immune-related Target Mrnas

K. Ishii, D. Standley, A. Vandenbon, 2022 .

Thyroid hormone regulation of gene expression in the developing rat fetal cerebral cortex: prominent role of the Ca2+/calmodulin-dependent protein kinase IV pathway.

J. Bernal, P. Berbel, G. D. de Escobar, 2010, Endocrinology.

Network analysis identifies a putative role for the PPAR and type 1 interferon pathways in glucocorticoid actions in asthmatics

Susumu Goto, Åsa M Wheelock, Craig E Wheelock, 2012, BMC Medical Genomics.

Distinct transcriptional regulatory modules underlie STAT3’s cell type-independent and cell type-specific functions

Diego Miranda-Saavedra, Diego Diez, Ralf Jauch, 2013, Nucleic acids research.

Single-cell transcriptome profiling of thyroid hormone effectors in the human fetal neocortex: expression of SLCO1C1, DIO2, and THRB in specific cell types.

J. Bernal, Diego Diez, B. Morte, 2021, Thyroid : official journal of the American Thyroid Association.

A universal tool for predicting differentially active features in single-cell and spatial genomics data

A. Vandenbon, Diego Diez, 2023, Scientific reports.

A universal differential expression prediction tool for single-cell and spatial genomics data

A. Vandenbon, Diego Diez, 2023, bioRxiv.

varDB: a pathogen-specific sequence database of protein families involved in antigenic variation

Susumu Goto, Minoru Kanehisa, Nicolas Joannin, 2008, Bioinform..

Advances and Applications in Bioinformatics and Chemistry Dovepress Mapping Circulating Serum Mirnas to Their Immune-related Target Mrnas

K. Ishii, D. Standley, A. Vandenbon, 2022 .

A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data

Alexis Vandenbon, Diego Diez, A. Vandenbon, 2020, Nature Communications.