P. Binz

发表

The mouse SWISS‐2D PAGE database: a tool for proteomics study of diabetes and obesity

Christine Hoogland, Salvo Paesano, C. Hoogland, 2001, Proteomics.

ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination

Andrew R. Jones, José A. Dianes, G. Omenn, 2014, Nature Biotechnology.

Proteomics and Mass Spectrometry

D. Hochstrasser, R. Appel, E. Jung, 2001 .

Modeling peptide mass fingerprinting data using the atomic composition of peptides

D. Hochstrasser, R. Appel, D. Hochstrasser, 1999, Electrophoresis.

Peptide mass fingerprinting peak intensity prediction: Extracting knowledge from spectra

D. Hochstrasser, R. Appel, P. Binz, 2002, Proteomics.

Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO‐PSI) Geneva, September, 4–6, 2005

Chris F. Taylor, Rolf Apweiler, Henning Hermjakob, 2006, Proteomics.

Getting a grip on proteomics data – Proteomics Data Collection (ProDaC)

Lennart Martens, Harald Barsnes, Martin Eisenacher, 2009, Proteomics.

On the benefits of acquiring peptide fragment ions at high measured mass accuracy

R. Appel, D. Goodlett, S. Shaffer, 2008, Journal of the American Society for Mass Spectrometry.

Standard guidelines for the chromosome-centric human proteome project.

S. Hanash, R. Aebersold, A. Bairoch, 2012, Journal of proteome research.

The Human Diabetes Proteome Project (HDPP): From network biology to targets for therapies and prevention

Ioannis Xenarios, Anne Zufferey, F. Topf, 2013 .

Mass Spectrometry-Based Proteomics: Current Status and Potential Use in Clinical Chemistry

D. Hochstrasser, R. Appel, P. Binz, 2003, Clinical chemistry and laboratory medicine.

Toward a clinical molecular scanner for proteome research: parallel protein chemical processing before and during western blot.

D F Hochstrasser, D. Hochstrasser, K. Rose, 1999, Analytical chemistry.

A molecular scanner to automate proteomic research and to display proteome images.

A Bairoch, M R Wilkins, L Tonella, 1999, Analytical chemistry.

Exploring glycopeptide-resistance in Staphylococcus aureus: a combined proteomics and transcriptomics approach for the identification of resistance-related markers

Alexander Scherl, Jean-Charles Sanchez, Pierre-Alain Binz, 2006, BMC Genomics.

6th HUPO Annual World Congress – Proteomics Standards Initiative Workshop 6–10 October 2007, Seoul, Korea

Lennart Martens, Henning Hermjakob, Pierre-Alain Binz, 2008, Proteomics.

The molecular scanner: concept and developments.

Markus Müller, C. Hoogland, D. Hochstrasser, 2004, Current opinion in biotechnology.

Molecular Scanner Development

D. Hochstrasser, K. Rose, W. Bienvenut, 2005 .

Protein Identification in Proteomics

M. Wilkins, Patricia Hernandez, P. Binz, 2007 .

The PSI-MOD community standard for representation of protein modification data

Luisa Montecchi-Palazzi, Pierre-Alain Binz, Ron Beavis, 2008, Nature Biotechnology.

Title : A standardized framing for reporting protein identifications in mzIdentML 1

Andrew R. Jones, B. Searle, D. Tabb, 2022 .

Standard Guidelines for the Chromosome-Centric

S. Hanash, A. Bairoch, G. Omenn, 2012 .

Method for identification and quantitative analysis of protein lysine methylation using matrix‐assisted laser desorption/ionization — time‐of‐flight mass spectrometry and amino acid analysis

D. Hochstrasser, K. Williams, P. Binz, 1999, Electrophoresis.

High-throughput mass spectrometric discovery of protein post-translational modifications.

A Bairoch, M R Wilkins, E Gasteiger, 1999, Journal of molecular biology.

Molecular scanner experiment with human plasma: Improving protein identification by using intensity distributions of matching peptide masses

Markus Müller, D. Hochstrasser, R. Appel, 2002, Proteomics.

A clinical molecular scanner to study human proteome complexity.

D. Hochstrasser, P. Binz, R. Appel, 2000, Novartis Foundation symposium.

HUPO Brain Proteome Project pilot phase; Automated reprocessing pipeline for searching heterogenic data

Lennart Martens, Michael Müller, Gerhard Körting, 2006 .

ProDac (Proteomics data collection); Coordinated action within the 6th EU framework programme

Martin Eisenacher, Martin Blüggel, Christian Stephan, 2006 .

Report from the HarmoSter study: inter-laboratory comparison of LC-MS/MS measurements of corticosterone, 11-deoxycortisol and cortisone

Stephen J. Bruce, M. Rauh, A. Heijboer, 2022, Clinical chemistry and laboratory medicine.

Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work

Silvio C. E. Tosatto, Andrew R. Jones, Tytus D. Mak, 2023, Journal of proteome research.

Metallothionein: Molecular evolution and classification

P. Binz, J. Kägi, 1999 .

Controlled vocabularies and ontologies in proteomics: Overview, principles and practice

Martin Eisenacher, Christian Stephan, Juan Antonio Vizcaíno, 2014, Biochimica et biophysica acta.

Activities at the Universal Protein Resource (UniProt)

María Martín, Peter B. McGarvey, Y Wang, 2013, Nucleic Acids Res..

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

Martin Eisenacher, Juan Antonio Vizcaíno, Henning Hermjakob, 2013, Database J. Biol. Databases Curation.

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

Martin Eisenacher, Johannes Griss, Juan Antonio Vizcaíno, 2012, Molecular & Cellular Proteomics.

mzML—a Community Standard for Mass Spectrometry Data*

Lennart Martens, Henning Hermjakob, Fredrik Levander, 2010, Molecular & Cellular Proteomics.

Guidelines for reporting the use of mass spectrometry informatics in proteomics

Chris F. Taylor, Chris F Taylor, Pierre-Alain Binz, 2008, Nature Biotechnology.

The minimum information about a proteomics experiment (MIAPE)

Lennart Martens, Chris F. Taylor, John R Yates, 2007, Nature Biotechnology.

Exudative glutamine losses contribute to high needs after burn injury

M. Berger, C. Scaletta, L. Applegate, 2021, JPEN. Journal of parenteral and enteral nutrition.

Heat shock proteins in human cancer

P. Binz, P. Mocarelli, C. Sarto, 2000, Electrophoresis.

Improving protein identification from peptide mass fingerprinting through a parameterized multi‐level scoring algorithm and an optimized peak detection

R D Appel, A Bairoch, D F Hochstrasser, 1999, Electrophoresis.

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

Nigel W. Hardy, Chris F. Taylor, John M. Hancock, 2008, Nature Biotechnology.

Trichinosis: a prospective controlled study of patients ten years after acute infection.

P. Binz, U. Bienzle, G. Harms, 1993, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Creatine transporter–deficient rat model shows motor dysfunction, cerebellar alterations, and muscle creatine deficiency without muscle atrophy

C. Sandi, C. Cudalbu, P. Binz, 2021, bioRxiv.

Ten Years of Standardizing Proteomic Data: A Report on the HUPO‐PSI Spring Workshop

Henning Hermjakob, Andrew R Jones, Pierre-Alain Binz, 2012, Proteomics.

Semisynthetic sensor proteins enable metabolic assays at the point of care

Pierre-Alain Binz, Kai Johnsson, Qiuliyang Yu, 2018, Science.

Gold coating of non-conductive membranes before matrix-assisted laser desorption/ionization tandem mass spectrometric analysis prevents charging effect.

D. Hochstrasser, Jean-Charles Sanchez, P. Binz, 2005, Rapid communications in mass spectrometry : RCM.

Expanding the Use of Spectral Libraries in Proteomics.

Johannes Griss, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2018, Journal of proteome research.

Proteomics Standards Initiative Extended FASTA Format (PEFF)

Harald Barsnes, Martin Eisenacher, Yasset Perez-Riverol, 2019, bioRxiv.

Proteomics Standards Initiative Extended FASTA Format (PEFF)

Harald Barsnes, Martin Eisenacher, Yasset Perez-Riverol, 2019, bioRxiv.

Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

Martin Eisenacher, Wout Bittremieux, Yasset Perez-Riverol, 2017, Journal of proteome research.

Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.

Luis Mendoza, Pierre-Alain Binz, Eric W Deutsch, 2016, Journal of proteome research.

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists*

Lennart Martens, Fredrik Levander, Matthew Chambers, 2011, Molecular & Cellular Proteomics.

Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase

Lennart Martens, Chris F. Taylor, Kai A Reidegeld, 2006, Proteomics.

Development of data representation standards by the human proteome organization proteomics standards initiative

Martin Eisenacher, Juan Antonio Vizcaíno, Juan P. Albar, 2015, J. Am. Medical Informatics Assoc..

A simple workflow to increase MS2 identification rate by subsequent spectral library search

Frederique Lisacek, Markus Müller, Pierre-Alain Binz, 2009, Proteomics.

MSight: An image analysis software for liquid chromatography‐mass spectrometry

Jean-Charles Sanchez, Pierre-Alain Binz, Ron D Appel, 2005, Proteomics.

Report from the HarmoSter study: impact of calibration on comparability of LC-MS/MS measurement of circulating cortisol, 17OH-progesterone and aldosterone

Stephen J. Bruce, M. Rauh, B. Keevil, 2022, Clinical chemistry and laboratory medicine.

Five years of progress in the Standardization of Proteomics Data 4th Annual Spring Workshop of the HUPO‐Proteomics Standards Initiative April 23–25, 2007 Ecole Nationale Supérieure (ENS), Lyon, France

Henning Hermjakob, Andrew R Jones, Angel Pizarro, 2007, Proteomics.

Universal Spectrum Identifier for mass spectra

Wout Bittremieux, Yasset Perez-Riverol, Juan Antonio Vizcaíno, 2020, Nature Methods.

Proteomics Standards Initiative’s ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms

Anthony J. Cesnik, Joshua A. Klein, N. Kelleher, 2021, Journal of proteome research.

Guidelines for reporting quantitative mass spectrometry based experiments in proteomics.

Martin Eisenacher, Salvador Martínez-Bartolomé, Pierre-Alain Binz, 2013, Journal of proteomics.

Guidelines for reporting the use of mass spectrometry in proteomics

Chris F. Taylor, Pierre-Alain Binz, Akira Tsugita, 2008, Nature Biotechnology.

X-Rank: a robust algorithm for small molecule identification using tandem mass spectrometry.

Frederique Lisacek, Pierre-Alain Binz, Alexandre Masselot, 2009, Analytical chemistry.

Antibody-Coated Wearable Organic Electrochemical Transistors for Cortisol Detection in Human Sweat.

D. Briand, P. Binz, C. Lafaye, 2022, ACS sensors.

Functional specifications of an integrated proteomics information management and analysis platform

P.-A. Binz, P. Grangeat, M. Perez, 2007, 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

Data mining for mass-spectra based diagnosis and biomarker discovery

Melanie Hilario, Alexandros Kalousis, Julien Prados, 2004, Drug Discovery Today: BIOSILICO.

Signal Traitment and Virtual Images Production (1/2)

Ron D. Appel, Markus Müller, Jean-Charles Sanchez, 2005 .

A new rat model of creatine transporter deficiency reveals behavioral disorder and altered brain metabolism

Stephen J. Bruce, C. Sandi, C. Cudalbu, 2020, Scientific Reports.

The 1999 SWISS-2DPAGE database update

Ron D. Appel, Amos Bairoch, Jean-Charles Sanchez, 2000, Nucleic Acids Res..

Structural characterization of Cu(I) and Zn(II) sites in neuronal-growth-inhibitory factor by extended X-ray absorption fine structure (EXAFS).

P. Binz, J. Charnock, P. Faller, 1998, European Journal of Biochemistry.

Meeting New Challenges: The 2014 HUPO‐PSI/COSMOS Workshop

Henning Hermjakob, Carsten Kettner, Andrew R Jones, 2014, Proteomics.

Challenges in mass spectrometry

R. Stöcklin, P. Binz, 2002, Proteomics.

Annual Spring Meeting of the Proteomics Standards Initiative

Henning Hermjakob, Andrew R Jones, Pierre-Alain Binz, 2009, Proteomics.

The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative.

Juan P Albar, Salvador Martínez-Bartolomé, Pierre-Alain Binz, 2014, Methods in molecular biology.

The Make 2D‐DB II package: Conversion of federated two‐dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases

Pierre-Alain Binz, Khaled Mostaguir, Christine Hoogland, 2003, Proteomics.

Guidelines for reporting the use of gel electrophoresis in proteomics

Chris F. Taylor, Joachim Klose, Gyorgy Babnigg, 2008, Nature Biotechnology.

Nomenclature of metallothionein: Proposal for a revision

P. Binz, J. Kägi, Y. Kojima, 1999 .

From Proteomics Data Representation to Public Data Flow: A Report on the HUPO‐PSI Workshop September 2011, Geneva, Switzerland

Martin Eisenacher, Juan Antonio Vizcaíno, Henning Hermjakob, 2012, Proteomics.

Managing the Data Explosion A Report on the HUPO‐PSI Workshop August 2008, Amsterdam, The Netherlands

Martin Eisenacher, Hans-Joachim Kraus, Amos Bairoch, 2009, Proteomics.

Annual Spring Meeting of the Proteomics Standards Initiative 23–25 April 2008, Toledo, Spain

Henning Hermjakob, Andrew R. Jones, Eric W. Deutsch, 2008, Proteomics.

6 th HUPO Annual World Congress – Proteomics Standards Initiative Workshop

H. Hermjakob, S. Orchard, L. Martens, 2022 .

Duran-Trio et al. Motor dysfunction in a creatine transporter deficient rat

C. Sandi, C. Cudalbu, P. Binz, 2021 .

Improving protein identification from peptide mass fingerprinting through a parameterized multi‐level scoring algorithm and an optimized peak detection

Markus Müller, C. Hoogland, D. Hochstrasser, 1999, Electrophoresis.

Modeling peptide mass fingerprinting data using the atomic composition of peptides

D. Hochstrasser, R. Appel, P. Binz, 1999, Electrophoresis.

The ESF Programme on Functional Genomics Workshop on ‘Data Integration in Functional Genomics: Application to Biological Pathways’

Henning Hermjakob, Pierre-Alain Binz, Paul van der Vet, 2004, Comparative and functional genomics.

Measuring Salivary Cortisol to Assess the Effect of Natural Environments on Stress Level in Acute Patients With Severe Brain Injuries: An Exploratory Study

P. Binz, Caroline Attwell, Jane Jöhr, 2023, Cureus.

New perspectives in the Escherichia coli proteome investigation

C. Hoogland, D. Hochstrasser, R. Appel, 2001, Proteomics.

- 1-PSI-MOD : a community standard for representation of protein modification data

Luisa Montecchi-Palazzi, Pierre-Alain Binz, John S. Garavelli, 2022 .

Structural and biological studies on native bovine Cu,Zn-metallothionein-3

P. Binz, J. Charnock, P. Faller, 1999 .

Sex-specific interactions between stress axis and redox balance are associated with internalizing symptoms and brain white matter microstructure in adolescents

P. Binz, P. Steullet, K. Do, 2024, Translational psychiatry.

Second Joint HUPO Publication and Proteomics Standards Initiative Workshop

H. Hermjakob, S. Orchard, P. Binz, 2009, Proteomics.

The mouse SWISS‐2D PAGE database: a tool for proteomics study of diabetes and obesity

C. Hoogland, D. Hochstrasser, R. Appel, 2001, Proteomics.