Yingxin Zhao

发表

Diabetes‐induced changes in the renal cortical proteome assessed with two‐dimensional gel electrophoresis and mass spectrometry

Allan R Brasier, A. Kurosky, A. Brasier, 2007, Proteomics.

Comprehensive analysis of the mouse renal cortex using two-dimensional HPLC – tandem mass spectrometry

L. Denner, R. Tilton, S. Haidacher, 2008, Proteome Science.

Dynamic Cross Talk Model of the Epithelial Innate Immune Response to Double-Stranded RNA Stimulation: Coordinated Dynamics Emerging from Cell-Level Noise

Marek Kimmel, Tomasz Lipniacki, Allan R. Brasier, 2014, PloS one.

Quantitation of the Dynamic Profiles of the Innate Immune Response Using Multiplex Selected Reaction Monitoring–Mass Spectrometry*

A. Brasier, B. Tian, Yingxin Zhao, 2013, Molecular & Cellular Proteomics.

CDK9-Dependent Transcriptional Elongation in the Innate Interferon-Stimulated Gene Response to Respiratory Syncytial Virus Infection in Airway Epithelial Cells

R. Garofalo, A. Brasier, B. Tian, 2013, Journal of Virology.

Inducible Tumor Necrosis Factor (TNF) Receptor-associated Factor-1 Expression Couples the Canonical to the Non-canonical NF-κB Pathway in TNF Stimulation*

S. Choudhary, A. Brasier, B. Tian, 2013, The Journal of Biological Chemistry.

Type II Epithelial-mesenchymal transition upregulates protein N-glycosylation to maintain proteostasis and extracellular matrix production.

S. Widen, M. Jamaluddin, A. Brasier, 2019, Journal of proteome research.

Qualification and Verification of Protein Biomarker Candidates.

A. Brasier, Yingxin Zhao, 2016, Advances in experimental medicine and biology.

Selective Antagonists of the Bronchiolar Epithelial NF-κB-Bromodomain-Containing Protein 4 Pathway in Viral-Induced Airway Inflammation.

A. Brasier, B. Tian, Yingxin Zhao, 2018, Cell reports.

Selective Molecular Antagonists of the Bronchiolar Epithelial NF κ B-Bromodomain-Containing Protein 4 (BRD4) Pathway in Viral-induced Airway Inflammation

A. Brasier, B. Tian, Yingxin Zhao, 2018 .

Junín Virus Infection Activates the Type I Interferon Pathway in a RIG-I-Dependent Manner

O. Kolokoltsova, A. Brasier, B. Tian, 2012, PLoS neglected tropical diseases.

Proteomic analysis of global alteration of protein expression in squamous cell carcinoma of the esophagus

Ge Zhou, Yingxin Zhao, Peng Lee, 2005, Proteomics.

Measurement of the innate immune response in the airway.

A. Brasier, Yingxin Zhao, 2014, Advances in experimental medicine and biology.

RELA∙8-Oxoguanine DNA Glycosylase1 Is an Epigenetic Regulatory Complex Coordinating the Hexosamine Biosynthetic Pathway in RSV Infection

Dianhua Qiao, A. Brasier, I. Boldogh, 2022, Cells.

Mucosal bromodomain‐containing protein 4 mediates aeroallergen‐induced inflammation and remodeling

W. Calhoun, A. Brasier, B. Tian, 2019, The Journal of allergy and clinical immunology.

Coordinate activities of BRD4 and CDK9 in the transcriptional elongation complex are required for TGFβ-induced Nox4 expression and myofibroblast transdifferentiation

D. Herndon, C. Finnerty, M. Jamaluddin, 2017, Cell Death & Disease.

BRD4 Couples NF-κB/RelA with Airway Inflammation and the IRF-RIG-I Amplification Loop in Respiratory Syncytial Virus Infection

T. Ivanciuc, R. Garofalo, A. Brasier, 2017, Journal of Virology.

Uronic acid pathway metabolites regulate mesenchymal transition and invasiveness in lung adenocarcinoma.

A. Brasier, Yingxin Zhao, 2019, Biotarget.

Optical biosensing of markers of mucosal inflammation.

C. Culbertson, B. Ameredes, W. Calhoun, 2021, Nanomedicine : nanotechnology, biology, and medicine.

The IRE1α–XBP1s Arm of the Unfolded Protein Response Activates N-Glycosylation to Remodel the Subepithelial Basement Membrane in Paramyxovirus Infection

Dianhua Qiao, A. Brasier, Yingxin Zhao, 2022, International journal of molecular sciences.

Capillary high-performance liquid chromatography/mass spectrometric analysis of proteins from affinity-purified plasma membrane.

M. White, Yingxin Zhao, Wei Zhang, 2003, Analytical chemistry.

Central Role of the NF-κB Pathway in the Scgb1a1-Expressing Epithelium in Mediating Respiratory Syncytial Virus-Induced Airway Inflammation

T. Ivanciuc, R. Garofalo, A. Brasier, 2018, Journal of Virology.

Effects of storage temperature on airway exosome integrity for diagnostic and functional analyses

C. Culbertson, M. Motamedi, M. Jamaluddin, 2017, Journal of extracellular vesicles.

Palmitoyl-carnitine production by blood cells associates with the concentration of circulating acyl-carnitines in healthy overweight women.

L. Sidossis, N. Abate, M. Sheffield-Moore, 2017, Clinical Nutrition.

Methods for biomarker verification and assay development

A. Brasier, Yingxin Zhao, 2011 .

ATM regulates NF-κB-dependent immediate-early genes via RelA Ser 276 phosphorylation coupled to CDK9 promoter recruitment

S. Choudhary, A. Brasier, I. Boldogh, 2014, Nucleic acids research.

Detection of structural and metabolic changes in traumatically injured hippocampus by quantitative differential proteomics.

R. Sadygov, D. Prough, B. Luxon, 2013, Journal of neurotrauma.

Using power spectrum analysis to evaluate (18)O-water labeling data acquired from low resolution mass spectrometers.

Rovshan G Sadygov, R. Sadygov, L. Denner, 2010, Journal of proteome research.

Improved Detection of Invasive Pulmonary Aspergillosis Arising during Leukemia Treatment Using a Panel of Host Response Proteins and Fungal Antigens

K. Soman, A. Caliendo, B. Alexander, 2015, PloS one.

Systematic Determination of Human Cyclin Dependent Kinase (CDK)-9 Interactome Identifies Novel Functions in RNA Splicing Mediated by the DEAD Box (DDX)-5/17 RNA Helicases*

Andrzej Kudlicki, Allan R. Brasier, Xueling Li, 2015, Molecular & Cellular Proteomics.

Nonphosphorylated Human La Antigen Interacts with Nucleolin at Nucleolar Sites Involved in rRNA Biogenesis

M. DePamphilis, A. Vassilev, Yingxin Zhao, 2004, Molecular and Cellular Biology.

Altered Retinoic Acid Metabolism in Diabetic Mouse Kidney Identified by 18O Isotopic Labeling and 2D Mass Spectrometry

R. Sadygov, B. Luxon, M. Kane, 2010, PloS one.

DNMT3B interacts with hSNF2H chromatin remodeling enzyme, HDACs 1 and 2, and components of the histone methylation system.

K. Robertson, Yingxin Zhao, T. Geiman, 2004, Biochemical and biophysical research communications.

Integrative proteomic analysis reveals reprograming tumor necrosis factor signaling in epithelial mesenchymal transition.

R. Sadygov, A. Brasier, B. Tian, 2016, Journal of proteomics.

Mip1, an MEKK2-Interacting Protein, Controls MEKK2 Dimerization and Activation

B. Su, Yingxin Zhao, Jinke Cheng, 2005, Molecular and Cellular Biology.

The NFκB subunit RELA is a master transcriptional regulator of the committed epithelial-mesenchymal transition in airway epithelial cells

A. Kudlicki, S. Widen, A. Brasier, 2018, The Journal of Biological Chemistry.

Cognitive Enhancement with Rosiglitazone Links the Hippocampal PPARγ and ERK MAPK Signaling Pathways

R. Sadygov, B. Luxon, H. Spratt, 2012, The Journal of Neuroscience.

Proteomic analysis of integral plasma membrane proteins.

Wei Zhang, Y. Kho, Yingxin Zhao, 2004, Analytical chemistry.

Lysine 63-linked ubiquitination of tau oligomers contributes to the pathogenesis of Alzheimer’s disease

U. Sengupta, R. Kayed, Yingxin Zhao, 2022, The Journal of biological chemistry.

The Hexosamine Biosynthetic Pathway Links Innate Inflammation With Epithelial-Mesenchymal Plasticity in Airway Remodeling

Dianhua Qiao, A. Brasier, Yingxin Zhao, 2021, Frontiers in Pharmacology.

BRD4 mediates NF-κB-dependent epithelial-mesenchymal transition and pulmonary fibrosis via transcriptional elongation.

A. Brasier, B. Tian, Yingxin Zhao, 2016, American journal of physiology. Lung cellular and molecular physiology.

Mixed-effects model of epithelial-mesenchymal transition reveals rewiring of signaling networks.

R. Sadygov, A. Brasier, B. Tian, 2015, Cellular signalling.

Modulation of Gene Expression Regulated by the Transcription Factor NF-κB/RelA*

Andrzej Kudlicki, Allan R. Brasier, Xueling Li, 2014, The Journal of Biological Chemistry.

Quantitative Assessment of the Effects of Trypsin Digestion Methods on Affinity Purification-Mass Spectrometry-based Protein-Protein Interaction Analysis.

A. Brasier, Yingxin Zhao, Hong Sun, 2017, Journal of proteome research.

Quantification of Activated NF-κB/RelA Complexes Using ssDNA Aptamer Affinity – Stable Isotope Dilution—Selected Reaction Monitoring—Mass Spectrometry*

S. Widen, M. Jamaluddin, A. Brasier, 2011, Molecular & Cellular Proteomics.

Applications of selected reaction monitoring (SRM)-mass spectrometry (MS) for quantitative measurement of signaling pathways.

A. Brasier, Yingxin Zhao, 2013, Methods.

Inducible STAT3 NH2 terminal mono-ubiquitination promotes BRD4 complex formation to regulate apoptosis.

M. Jamaluddin, A. Brasier, Yingxin Zhao, 2014, Cellular signalling.

Toward a global characterization of the phosphoproteome in prostate cancer cells: Identification of phosphoproteins in the LNCaP cell line

Yingxin Zhao, D. Desiderio, F. Giorgianni, 2007, Electrophoresis.

Paramyxovirus replication induces the hexosamine biosynthetic pathway and mesenchymal transition via the IRE1α-XBP1s arm of the unfolded protein response

Dianhua Qiao, R. Garofalo, A. Brasier, 2021, American journal of physiology. Lung cellular and molecular physiology.

Crosstalk of the IκB Kinase with Spliced X-Box Binding Protein 1 Couples Inflammation with Glucose Metabolic Reprogramming in Epithelial-Mesenchymal Transition.

A. Brasier, Yingxin Zhao, Hong Sun, 2021, Journal of proteome research.

Systematic Analysis of Cell-Type Differences in the Epithelial Secretome Reveals Insights into the Pathogenesis of Respiratory Syncytial Virus–Induced Lower Respiratory Tract Infections

T. Ivanciuc, R. Garofalo, M. Jamaluddin, 2017, The Journal of Immunology.

Polymorphic α-Synuclein Strains Modified by Dopamine and Docosahexaenoic Acid Interact Differentially with Tau Protein

U. Sengupta, R. Kayed, Yingxin Zhao, 2020, Molecular Neurobiology.

Cognitive Enhancing Treatment with a PPARγ Agonist Normalizes Dentate Granule Cell Presynaptic Function in Tg2576 APP Mice

R. Sadygov, B. Luxon, H. Spratt, 2014, The Journal of Neuroscience.

Phosphoproteomic analysis of the human pituitary

Yingxin Zhao, D. Desiderio, F. Giorgianni, 2006, Pituitary.

Tract Infections Induced Lower Respiratory − Syncytial Virus into the Pathogenesis of Respiratory in the Epithelial Secretome Reveals Insights Systematic Analysis of Cell-Type Differences

T. Ivanciuc, R. Garofalo, M. Jamaluddin, 2017 .

Selective Affinity Enrichment of Nitrotyrosine-Containing Peptides for Quantitative Analysis in Complex Samples.

A. Brasier, Yingxin Zhao, Hong Sun, 2017, Journal of proteome research.

Quantitative Proteomics of the Endothelial Secretome Identifies RC0497 as Diagnostic of Acute Rickettsial Spotted Fever Infections.

A. Brasier, Yingxin Zhao, J. Oteo, 2020, The American journal of pathology.

Endothelial Cell Proteomic Response to Rickettsia conorii Infection Reveals Activation of the Janus Kinase (JAK)-Signal Transducer and Activator of Transcription (STAT)-Inferferon Stimulated Gene (ISG)15 Pathway and Reprogramming Plasma Membrane Integrin/Cadherin Signaling*

A. Brasier, Yingxin Zhao, M. Gazi, 2015, Molecular & Cellular Proteomics.

Global identification of O-GlcNAc-modified proteins.

Animesh Nandi, Yingming Zhao, J. Falck, 2006, Analytical chemistry.

Molecular classification of outcomes from dengue virus -3 infections.

K. Soman, J. Wiktorowicz, H. Spratt, 2015, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Pharmacoproteomics reveal novel protective activity of bromodomain containing 4 inhibitors on vascular homeostasis in TLR3-mediated airway remodeling.

W. Calhoun, M. Motamedi, A. Brasier, 2019, Journal of proteomics.

CALL PAPERS Translational Research in Acute Lung Injury and Pulmonary Fibrosis BRD4 mediates NF- (cid:2) B-dependent epithelial-mesenchymal transition and pulmonary ﬁbrosis via transcriptional elongation

A. Brasier, B. Tian, Yingxin Zhao, 2016 .

Quantitation of the Dynamic Profiles of the Innate Immune Response Using Multiplex Selected Reaction Monitoring–Mass Spectrometry*

A. Brasier, B. Tian, Yingxin Zhao, 2013, Molecular & Cellular Proteomics.

Dynamic cross talk model of the epithelial innate immune response to double-stranded RNA stimulation: Coordinated dynamics emerging from cell-level noise (PLoS ONE 9, 4 (e93396) DOI:10.1371/journal.pone.0093396)

Roberto Bertolusso, Leoncio A. Vergara, B. Tian, 2014 .