Wenbin Ye

发表

The Effect of Central Loops in miRNA:MRE Duplexes on the Efficiency of miRNA-Mediated Gene Regulation

Wenbin Ye, Yaou Zhang, Yaou Zhang, 2008, PloS one.

scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data

Guoli Ji, Pengchao Ye, Wenbin Ye, 2019, BMC Genomics.

Learning association for single-cell transcriptomics by integrating profiling of gene expression and alternative polyadenylation

Sheng Zhu, Guoli Ji, Wenbin Ye, 2021, bioRxiv.

PlantAPAdb: A Comprehensive Database for Alternative Polyadenylation Sites in Plants1[CC-BY]

Sheng Zhu, Congting Ye, Guoli Ji, 2019, Plant Physiology.

A two-layer model for gene clustering using poly(A) site data

Congting Ye, Guoli Ji, Wenbin Ye, 2017, 2017 3rd IEEE International Conference on Control Science and Systems Engineering (ICCSSE).

Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis

Guoli Ji, Pengchao Ye, Wenbin Ye, 2019, BMC Genomics.

The full-length transcriptome of Spartina alterniflora reveals the complexity of high salt tolerance in monocotyledonous halophyte.

Sheng Zhu, Guoli Ji, Wenbin Ye, 2020, Plant & cell physiology.

The full-length transcriptome of Spartina alterniflora reveals the complexity of high salt tolerance in monocotyledonous halophyte

Sheng Zhu, Guoli Ji, Wenbin Ye, 2019, bioRxiv.

A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq

Congting Ye, Wenbin Ye, Xiaohui Wu, 2022, bioRxiv.

The cell-free DNA methylome captures distinctions between localized and metastatic prostate tumors

Trevor J Pugh, P. Awadalla, A. Wyatt, 2022, Nature Communications.

Neuroprotective Effects of Estrogen Through BDNF-Transient Receptor Potential Channels 6 Signaling Pathway in the Hippocampus in a Rat Model of Perimenopausal Depression

Wenbin Ye, H. Yan, Xinjia Han, 2022, Frontiers in Aging Neuroscience.

The 5-Hydroxymethylcytosine Landscape of Prostate Cancer

Luke A. Gilbert, A. Bergamaschi, P. Boutros, 2022, Cancer research.

MiRNA-Directed Regulation of VEGF and Other Angiogenic Factors under Hypoxia

Wenbin Ye, Yaou Zhang, Yaou Zhang, 2006, PloS one.

VEGF-specific siRNAs modified with 2′-deoxy effectively suppress VEGF expression and inhibit growth of nasopharyngeal carcinoma xenograft in a mouse model

Yaou Zhang, Guofeng Gao, Wenbin Ye, 2008, Science in China Series C: Life Sciences.

PAcluster: Clustering polyadenylation site data using canonical correlation analysis

Xiaohui Wu, Guoli Ji, Congting Ye, 2017, J. Bioinform. Comput. Biol..

The effect of pleiotrophin signaling on adipogenesis

Yaou Zhang, Wenbin Ye, Q. Lv, 2007, FEBS letters.

Alternative 3′ UTRs contributes to post-transcriptional gene expression regulation under high salt stress

Sheng Zhu, Guoli Ji, Wenbin Ye, 2022, bioRxiv.

A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data

Guoli Ji, Congting Ye, Hongjuan Fu, 2020, Briefings Bioinform..

QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering

Guoli Ji, Congting Ye, Wenbin Ye, 2021, Briefings Bioinform..

scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data

Guoli Ji, Pengchao Ye, Wenbin Ye, 2019, BMC genomics.

Differential alternative polyadenylation contributes to the developmental divergence between two rice subspecies, japonica and indica

Sheng Zhu, Congting Ye, Guoli Ji, 2019, The Plant journal : for cell and molecular biology.

scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution

Sheng Zhu, Guoli Ji, Wenbin Ye, 2021, Nucleic Acids Res..

scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data

Tao Liu, Guoli Ji, Congting Ye, 2020, Briefings Bioinform..

Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis

Guoli Ji, Pengchao Ye, Wenbin Ye, 2019, BMC Genomics.

Alternative 3'-untranslated regions regulate high salt tolerance of Spartina alterniflora.

Sheng Zhu, Guoli Ji, Wenbin Ye, 2023, Plant physiology.

Comparative Research of Different Dimension Reduction Methods Combined with RWR Network Smoothing in Single Cell RNA-seq Data

Wenbin Ye, Xuesong Xiao, Pengchao Ye, 2020, IOP Conference Series: Earth and Environmental Science.

scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size

Guoli Ji, Congting Ye, Xiaohui Wu, 2019, Bioinform..

vizAPA: visualizing dynamics of alternative polyadenylation from bulk and single-cell data

Wenbin Ye, Xingyu Bi, Xin Cheng, 2024, Bioinformatics.

TDP-43 dysregulation of polyadenylation site selection is a defining feature of RNA misprocessing in ALS/FTD and related disorders

A. L. La Spada, Wenbin Ye, Sebastian Michels, 2024, bioRxiv.