Hui Liu

发表

A Bayesian approach for identifying miRNA targets by combining sequence prediction and gene expression profiling

Yufei Huang, Shou-Jiang Gao, Lin Zhang, 2010, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

Survey of Computational Algorithms for MicroRNA Target Prediction

Yufei Huang, Hui Liu, Yufei Huang, 2009, Current genomics.

A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.

Yufei Huang, Shaowu Zhang, Yidong Chen, 2014, Methods.

A nonparametric Bayesian approach for clustering bisulfate-based DNA methylation profiles

Yufei Huang, Hui Liu, Lin Zhang, 2012, BMC Genomics.

Clustering Count-based RNA Methylation Data Using a Nonparametric Generative Model

Yufei Huang, Xuesong Wang, Jia Meng, 2018, Current Bioinformatics.

Spatially Enhanced Differential RNA Methylation Analysis from Affinity-Based Sequencing Data with Hidden Markov Model

Yufei Huang, Jia Meng, Shao-Wu Zhang, 2015, BioMed research international.

An Optimal Mean Based Block Robust Feature Extraction Method to Identify Colorectal Cancer Genes with Integrated Data

X. Wang, Yuhu Cheng, Hui Liu, 2017, Scientific Reports.

Prediction of Long Non-Coding RNAs Based on RNA-Seq*: Prediction of Long Non-Coding RNAs Based on RNA-Seq*

Hui Liu, Lei Sun, Lin Zhang, 2013 .

RC-Net: Regression Correction for End-To-End Chromosome Instance Segmentation

Hui Liu, Lin Zhang, Sifan Song, 2022, Frontiers in Genetics.

Viral and Cellular N6-Methyladenosine (m6A) and N6, 2′-O-Dimethyladenosine (m6Am) Epitranscriptomes in KSHV Life Cycle

Yufei Huang, Jia Meng, Shou-Jiang Gao, 2017, Nature Microbiology.

LRTCLS: low-rank tensor completion with Laplacian smoothing regularization for unveiling the post-transcriptional machinery of N6-methylation (m6A)-mediated diseases

Hui Liu, Lin Zhang, Jiani Ma, 2022, Briefings Bioinform..

EMDLP: Ensemble multiscale deep learning model for RNA methylation site prediction

Yanjing Sun, Hui Liu, Lin Zhang, 2022, BMC Bioinformatics.

BRPCA: Bounded Robust Principal Component Analysis to Incorporate Similarity Network for N7-Methylguanosine(m7G) Site-Disease Association Prediction

Shaojie Li, Hui Liu, Lin Zhang, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Enhancing Epitranscriptome Module Detection from m6A-Seq Data Using Threshold-Based Measurement Weighting Strategy

Hui Liu, Zhiliang Lu, Kunqi Chen, 2018, BioMed research international.

ARMS Net: Overlapping chromosome segmentation based on Adaptive Receptive field Multi-Scale network

Lin Zhang, Hui Liu, Guangjie Wang, 2021, Biomed. Signal Process. Control..

Improving performance of mammalian microRNA target prediction

Dong Yue, Hui Liu, Yufei Huang, 2010, BMC Bioinformatics.

lncRScan-SVM: A Tool for Predicting Long Non-Coding RNAs Using Support Vector Machine

Jia Meng, Lin Zhang, Hui Liu, 2015, PloS one.

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study

Zhihua Zhang, Hui Liu, Lei Sun, 2012, BMC Bioinformatics.

miRNA Target Prediction Method Based on the Combination of Multiple Algorithms

Dong Yue, Hui He, Hui Liu, 2010, ICIC.

SysMicrO: A Novel Systems Approach for miRNA Target Prediction

Hui Liu, Yufei Huang, Yidong Chen, 2010, ICIC.

A Bayesian Approach for Identifying miRNA Targets by Combining Sequence Prediction and Expression Profiling

Hui Liu, Yufei Huang, Lin Zhang, 2009, 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing.

A comprehensive study of a SVM-based miRNA target prediction algorithm

Dong Yue, Hui Liu, Yufei Huang, 2009, 2009 IEEE International Workshop on Genomic Signal Processing and Statistics.

A SVM based approach for miRNA target prediction

Hui Liu, Lin Zhang, Yu-Fei Huang, 2008, 2008 International Conference on Machine Learning and Cybernetics.

A machine learning approach for miRNA target prediction

Yufei Huang, Shou-Jiang Gao, Lin Zhang, 2008, 2008 IEEE International Workshop on Genomic Signal Processing and Statistics.

MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome

Xing Chen, Hui Liu, Yufei Huang, 2017, Nucleic Acids Res..

m7GDisAI: N7-methylguanosine (m7G) sites and diseases associations inference based on heterogeneous network

Hui Liu, Lin Zhang, Jiani Ma, 2021, BMC Bioinform..

Guitar: An R/Bioconductor Package for Gene Annotation Guided Transcriptomic Analysis of RNA-Related Genomic Features

Yufei Huang, Jia Meng, Shao-Wu Zhang, 2016, BioMed research international.

RNA methylation and diseases: experimental results, databases, Web servers and computational models

Ya-Zhou Sun, Jian-Qiang Li, Xing Chen, 2019, Briefings Bioinform..

m7GDisAI: N7-methylguanosine (m7G) sites and diseases associations inference based on heterogeneous network

Bowen Song, Jiani Ma, Lin Zhang, 2021, BMC Bioinformatics.

An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer

Hui Liu, Yufei Huang, Yidong Chen, 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS).

Decomposition of RNA methylome reveals co-methylation patterns induced by latent enzymatic regulators of the epitranscriptome.

Yufei Huang, Jia Meng, Runsheng Chen, 2015, Molecular bioSystems.

Sketching the distribution of transcriptomic features on RNA transcripts with Travis coordinates

Jia Meng, Yufei Huang, Lin Zhang, 2015, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Polymorphism of P66 in Borrelia Burgdorferi Strains in China.

Hui Liu, K. Wan, Lin Zhang, 2021, Biomedical and environmental sciences : BES.

A Hybrid Interpolation Weighted Collaborative Filtering Method for Anti-cancer Drug Response Prediction

Na-Na Guan, Hui Liu, Lin Zhang, 2018, Front. Pharmacol..

Evaluation of Six Recombinant Proteins for Serological Diagnosis of Lyme Borreliosis in China.

Hui Liu, Wei Liu, K. Wan, 2016, Biomedical and environmental sciences : BES.

Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net

Hui Liu, Yufei Huang, Xuesong Wang, 2017, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Differential analysis of RNA methylome with improved spatial resolution

Xiaodong Cui, Hui Liu, Yufei Huang, 2014, 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP).

A brief review of RNA modification related database resources.

Hui Liu, Lin Zhang, Jiani Ma, 2021, Methods.

HN-CNN: A Heterogeneous Network Based on Convolutional Neural Network for m7 G Site Disease Association Prediction

Hui Liu, Lin Zhang, Jiani Ma, 2021, Frontiers in Genetics.

Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics

Xiujuan Lei, Yufei Huang, Jia Meng, 2020, Computational and structural biotechnology journal.

Viral and Cellular N6-Methyladenosine (m6A) and N6, 2′-O-Dimethyladenosine (m6Am) Epitranscriptomes in KSHV Life Cycle

Yufei Huang, Shaowu Zhang, Shou-Jiang Gao, 2017, Nature Microbiology.

EDLm6APred: ensemble deep learning approach for mRNA m6A site prediction

Xiuyu Li, Lin Zhang, Hui Liu, 2021, BMC Bioinformatics.

Unveiling the dynamics in RNA epigenetic regulations

Xiaodong Cui, Hui Liu, Yufei Huang, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

m6Acomet: large-scale functional prediction of individual m6A RNA methylation sites from an RNA co-methylation network

Qing Zhang, Hui Liu, Jionglong Su, 2019, BMC Bioinformatics.

SEMCM: A Self-Expressive Matrix Completion Model for Anti-cancer Drug Sensitivity Prediction

Jian Yu, Hui Liu, Lin Zhang, 2022, Current Bioinformatics.

Guitar2: An improved version of the Guitar for sketching the transcriptomic view of RNA-related biological features.

Hui Liu, Lin Zhang, Shutao Chen, 2022, Methods.

Anti-cancer Drug Response Prediction Using Neighbor-Based Collaborative Filtering with Global Effect Removal

Xing Chen, Lin Zhang, Yan Zhao, 2018, Molecular therapy. Nucleic acids.

MeT-DB: a database of transcriptome methylation in mammalian cells

Hui Liu, Yufei Huang, Yidong Chen, 2014, Nucleic Acids Res..

MeT-DB V2.0: Elucidating Context-Specific Functions of N6-Methyl-Adenosine Methyltranscriptome.

Hui Liu, Lin Zhang, Jia Meng, 2021, Methods in molecular biology.

REW-ISA: unveiling local functional blocks in epi-transcriptome profiling data via an RNA expression-weighted iterative signature algorithm

Shutao Chen, Jia Meng, Lin Zhang, 2020, BMC Bioinformatics.

FGFICA: Independent Component Analysis of Fusion Genomic Features for Mining Epi-Transcriptome Profiling Data

Hui Liu, Lin Zhang, Shutao Chen, 2022, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

REW-ISA V2: A Biclustering Method Fusing Homologous Information for Analyzing and Mining Epi-Transcriptome Data

Hui Liu, Lin Zhang, Jiani Ma, 2021, Frontiers in Genetics.

FBCwPlaid: A Functional Biclustering Analysis of Epi-Transcriptome Profiling Data Via a Weighted Plaid Model

Hui Liu, Lin Zhang, Jia Meng, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

An Optimal Mean Based Block Robust Feature Extraction Method to Identify Colorectal Cancer Genes with Integrated Data

X. Wang, Yuhu Cheng, Hui Liu, 2017, Scientific Reports.

MULGA, a unified multi-view graph autoencoder-based approach for identifying drug–protein interaction and drug repositioning

Shanshan Li, Hui Liu, Lin Zhang, 2023, Bioinform..

A Bayesian approach for identifying miRNA targets by combining sequence prediction and gene expression profiling

Yufei Huang, Shou-Jiang Gao, Yidong Chen, 2010, BMC Genomics.

Improving performance of mammalian microRNA target prediction

Yufei Huang, Shou-Jiang Gao, Yidong Chen, 2010, BMC Bioinformatics.

DBDNMF: A Dual Branch Deep Neural Matrix Factorization method for drug response prediction

Hui Liu, Lin Zhang, Feng Wang, 2024, PLoS computational biology.