T. Matsuura

发表

Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling

Kazufumi Hosoda, Tetsuya Yomo, Tomoaki Matsuura, 2017, Proceedings of the National Academy of Sciences.

In vitro membrane protein synthesis inside Sec translocon-reconstituted cell-sized liposomes

Hirotada Mori, Tomoaki Matsuura, Yasuhiko Kato, 2016, Scientific Reports.

Synthesis of functional proteins within liposomes.

T. Yomo, Hiroaki Suzuki, T. Matsuura, 2010, Methods in molecular biology.

Development of a bicistronic expression system in the branchiopod crustacean Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2017, Genesis.

Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment

T. Yomo, T. Matsuura, T. Sunami, 2013, Nature Communications.

Production of genome-edited Daphnia for heavy metal detection by fluorescence

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2020, Scientific Reports.

Robustness of a Reconstituted Escherichia coli Protein Translation System Analyzed by Computational Modeling.

Kazufumi Hosoda, Tomoaki Matsuura, Yoshihiro Shimizu, 2018, ACS synthetic biology.

Selection based on the folding properties of proteins with ribosome display

Andreas Plückthun, Tomoaki Matsuura, A. Plückthun, 2003, FEBS letters.

Strategies for Selection from Protein Libraries Composed of de Novo Designed Secondary Structure Modules

Andreas Plückthun, Tomoaki Matsuura, A. Plückthun, 2004, Origins of life and evolution of the biosphere.

Replication of Genetic Information with Self‐Encoded Replicase in Liposomes

Kazufumi Hosoda, Hiroshi Kita, Norikazu Ichihashi, 2008, ChemBioChem.

Femtoliter compartment in liposomes for in vitro selection of proteins.

Tetsuya Yomo, Tomoaki Matsuura, Itaru Urabe, 2006, Analytical biochemistry.

Quantitative analysis of cell-free synthesized membrane proteins at the stabilized droplet interface bilayer.

S. Takeuchi, T. Matsuura, Yasuhiko Kato, 2018, Chemical communications.

Different protein localizations on the inner and outer leaflet of cell-sized liposomes using cell-free protein synthesis

T. Matsuura, Takayoshi Watanabe, T. Hohsaka, 2018, Synthetic biology.

Liposome‐Based in Vitro Evolution of Aminoacyl‐tRNA Synthetase for Enhanced Pyrrolysine Derivative Incorporation

T. Yomo, T. Matsuura, Yasuhiko Kato, 2015, Chembiochem : a European journal of chemical biology.

Origin of lognormal-like distributions with a common width in a growth and division process.

T. Yomo, Hiroaki Suzuki, Kazufumi Hosoda, 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.

Reduction of histamine and enhanced spinning behavior of Daphnia magna caused by scarlet mutant

C. Barata, T. Matsuura, Yasuhiko Kato, 2020, Genesis.

Evolutionary molecular engineering by random elongation mutagenesis

T. Yomo, I. Urabe, Keizo Yamamoto, 1999, Nature Biotechnology.

Caloric restriction upregulates the expression of DNMT3.1, lacking the conserved catalytic domain, in Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2020, Genesis.

In vitro synthesis of the human calcium transporter Letm1 within cell-sized liposomes and investigation of its lipid dependency.

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2019, Journal of bioscience and bioengineering.

Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression.

T. Yomo, T. Matsuura, N. Ichihashi, 2012, RNA.

A methodology for creating thermostabilized mutants of G‐protein coupled receptors by combining statistical thermodynamics and evolutionary molecular engineering

Tomohiko Hayashi, M. Kinoshita, T. Matsuura, 2022, Protein Science.

Monitoring ecdysteroid activities using genetically encoded reporter gene in Daphnia magna.

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2018, Marine environmental research.

Genomic integration and ligand-dependent activation of the human estrogen receptor α in the crustacean Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2018, PloS one.

Optimization of mRNA design for protein expression in the crustacean Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2014, Molecular Genetics and Genomics.

Co-option of the bZIP transcription factor Vrille as the activator of Doublesex1 in environmental sex determination of the crustacean Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2017, PLoS genetics.

Cell-Free Synthesis of Human Endothelin Receptors and Its Application to Ribosome Display.

O. Nureki, Yoshihiro Shimizu, T. Yamaguchi, 2022, Analytical chemistry.

Chimeric mutants of staphylococcal hemolysin, which act as both one‐component and two‐component hemolysin, created by grafting the stem domain

Christian A. Choe, Po-Ssu Huang, M. Shirouzu, 2022, The FEBS journal.

Nonadditivity of mutational effects on the properties of catalase I and its application to efficient directed evolution.

T. Yomo, I. Urabe, K. Yamamoto, 1998, Protein engineering.

Betaproteobacteria Limnohabitans strains increase fecundity in the crustacean Daphnia magna: symbiotic relationship between major bacterioplankton and zooplankton in freshwater ecosystem.

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2016, Environmental microbiology.

In Vitro Selection of Proteins that Undergo Covalent Labeling with Small Molecules by Thiol‐Disulfide Exchange by Using Ribosome Display

T. Yomo, T. Matsuura, Y. Kazuta, 2011, Chembiochem : a European journal of chemical biology.

Construction and characterization of protein libraries composed of secondary structure modules

Andreas Plückthun, Tomoaki Matsuura, A. Plückthun, 2002, Protein science : a publication of the Protein Society.

Synthesis of milligram quantities of proteins using a reconstituted in vitro protein synthesis system.

T. Yomo, T. Matsuura, N. Ichihashi, 2014, Journal of bioscience and bioengineering.

Quantifying epistatic interactions among the components constituting the protein translation system

Tetsuya Yomo, Tomoaki Matsuura, Takuyo Aita, 2009, Molecular systems biology.

Atrazine exposed phytoplankton causes the production of non-viable offspring on Daphnia magna.

T. Muranaka, T. Matsuura, Yasuhiko Kato, 2019, Marine environmental research.

Sequence Conservation and Sexually Dimorphic Expression of the Ftz-F1 Gene in the Crustacean Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2016, PloS one.

A novel sequence-specific RNA quantification method using nicking endonuclease, dual-labeled fluorescent DNA probe, and conformation-interchangeable oligo-DNA.

Kazufumi Hosoda, Hiroshi Kita, Tetsuya Yomo, 2008, RNA.

In vitro evolution of α-hemolysin using a liposome display

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2013, Proceedings of the National Academy of Sciences.

Early Embryonic Expression of a Putative Ecdysteroid-Phosphate Phosphatase in the Water Flea, Daphnia magna (Cladocera: Daphniidae)

Tomoaki Matsuura, Yasuhiko Kato, T. Matsuura, 2014, Journal of insect science.

Constructive Approaches for the Origin of Life

Hiroaki Suzuki, Norikazu Ichihashi, Tomoaki Matsuura, 2012 .

Constructing partial models of cells.

Hiroshi Kita, Tetsuya Yomo, Norikazu Ichihashi, 2010, Cold Spring Harbor perspectives in biology.

Sense-overlapping lncRNA as a decoy of translational repressor protein for dimorphic gene expression

T. Wada, T. Matsuura, Yasuhiko Kato, 2021, PLoS genetics.

Nascent chain, mRNA, and ribosome complexes generated by a pure translation system.

T. Yomo, I. Urabe, T. Matsuura, 2007, Biochemical and biophysical research communications.

A 5′ UTR-Overlapping LncRNA Activates the Male-Determining Gene doublesex1 in the Crustacean Daphnia magna

T. Wada, T. Matsuura, Yasuhiko Kato, 2018, Current Biology.

DNMT3.1 controls trade-offs between growth, reproduction, and life span under starved conditions in Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2021, Scientific Reports.

Coupling of the fusion and budding of giant phospholipid vesicles containing macromolecules

Tetsuya Yomo, Tomoaki Matsuura, T. Yomo, 2012, Proceedings of the National Academy of Sciences.

Detection of association and fusion of giant vesicles using a fluorescence-activated cell sorter.

Tetsuya Yomo, Martin M Hanczyc, Tomoaki Matsuura, 2010, Langmuir : the ACS journal of surfaces and colloids.

Generation of white-eyed Daphnia magna mutants lacking scarlet function

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2018, bioRxiv.

CRISPR/Cas-mediated knock-in via non-homologous end-joining in the crustacean Daphnia magna

Tomoaki Matsuura, Yasuhiko Kato, T. Matsuura, 2017, PloS one.

Computational Design of Transmembrane Pores

David Baker, Frank DiMaio, Yang Hsia, 2020, Nature.

Ribosome display for rapid protein evolution by consecutive rounds of mutation and selection.

Tetsuya Yomo, Tomoaki Matsuura, T. Yomo, 2010, Methods in molecular biology.

Compensatory Evolution of a WW Domain Variant Lacking the Strictly Conserved Trp Residue

T. Yomo, T. Matsuura, Hayato Yanagida, 2007, Journal of Molecular Evolution.

Kinetic Analysis of the Entire RNA Amplification Process by Qβ Replicase*

Kazufumi Hosoda, Hiroshi Kita, Tetsuya Yomo, 2007, Journal of Biological Chemistry.

Kinetic Analysis of β-Galactosidase and β-Glucuronidase Tetramerization Coupled with Protein Translation*

T. Yomo, Kazufumi Hosoda, T. Matsuura, 2011, The Journal of Biological Chemistry.

Optimization of mRNA design for protein expression in the crustacean Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2014, Molecular Genetics and Genomics.

Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis.

T. Yomo, Hiroaki Suzuki, Kazufumi Hosoda, 2012, ACS synthetic biology.

Programmed vesicle fusion triggers gene expression.

Tetsuya Yomo, Martin M Hanczyc, Tomoaki Matsuura, 2011, Langmuir : the ACS journal of surfaces and colloids.

Mutation of the Cytochrome P450 CYP360A8 Gene Increases Sensitivity to Paraquat in Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2020, Environmental toxicology and chemistry.

Heterodimeric TALENs induce targeted heritable mutations in the crustacean Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2015, Biology Open.

Cell-free protein synthesis from a single copy of DNA in a glass microchamber.

Tetsuya Yomo, Tomoaki Matsuura, Taiji Okano, 2012, Lab on a chip.

In vitro evolution of proteins.

Tetsuya Yomo, Tomoaki Matsuura, T. Yomo, 2006, Journal of bioscience and bioengineering.

Compartmentalization in a water-in-oil emulsion repressed the spontaneous amplification of RNA by Q beta replicase.

T. Yomo, H. Kita, Kazufumi Hosoda, 2010, Biochemistry.

In vitro membrane protein synthesis inside cell-sized vesicles reveals the dependence of membrane protein integration on vesicle volume.

Tetsuya Yomo, Tomoaki Matsuura, Yasuhiko Kato, 2014, ACS synthetic biology.

Cell-free protein synthesis in a microchamber revealed the presence of an optimum compartment volume for high-order reactions.

Tetsuya Yomo, Tomoaki Matsuura, Taiji Okano, 2014, ACS synthetic biology.

Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication.

Tetsuya Yomo, Norikazu Ichihashi, Tomoaki Matsuura, 2012, Chemistry & biology.

CRISPR/Cas-Mediated Targeted Mutagenesis in Daphnia magna

Tomoaki Matsuura, Yasuhiko Kato, T. Matsuura, 2014, PloS one.

Effects of symbiotic bacteria on chemical sensitivity of Daphnia magna.

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2017, Marine environmental research.

Identification of Two Forms of Qβ Replicase with Different Thermal Stabilities but Identical RNA Replication Activity*

T. Yomo, Kazufumi Hosoda, T. Matsuura, 2010, The Journal of Biological Chemistry.

Evolvability and Self-Replication of Genetic Information in Liposomes

T. Yomo, Hiroaki Suzuki, H. Kita, 2011 .

Mapping the expression of the sex determining factor Doublesex1 in Daphnia magna using a knock-in reporter

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2017, Scientific Reports.

Fractal-shaped microchannel design for a kinetic analysis of biochemical reaction in a delay line

T. Yomo, Hiroaki Suzuki, Kazufumi Hosoda, 2012, Microfluidics and Nanofluidics.

Fractal-shaped microchannel design for a kinetic analysis of biochemical reaction in a delay line

T. Yomo, Hiroaki Suzuki, Kazufumi Hosoda, 2012 .

TALEN-mediated homologous recombination in Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2015, Scientific Reports.

Kinetic model of double‐stranded RNA formation during long RNA replication by Qβ replicase

T. Yomo, T. Matsuura, N. Ichihashi, 2013, FEBS letters.

Importance of compartment formation for a self-encoding system

T. Yomo, I. Urabe, T. Matsuura, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Mapping the expression of the sex determining factor Doublesex1 in Daphnia magna using a knock-in reporter

Tomoaki Matsuura, Yasuhiko Kato, T. Matsuura, 2017, Scientific Reports.

Programmable Artificial Cells Using Histamine-Responsive Synthetic Riboswitch.

Tomoaki Matsuura, Yohei Yokobayashi, Shungo Kobori, 2019, Journal of the American Chemical Society.

Construction of an in Vitro Gene Screening System of the E. coli EmrE Transporter Using Liposome Display.

Tomoaki Matsuura, Yasuhiko Kato, T. Matsuura, 2016, Analytical chemistry.

Liposome display for in vitro selection and evolution of membrane proteins

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2014, Nature Protocols.

Directed Evolution of Proteins through In Vitro Protein Synthesis in Liposomes

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2012, Journal of nucleic acids.

Cell-free protein synthesis inside giant unilamellar vesicles analyzed by flow cytometry.

Tetsuya Yomo, Tomoaki Matsuura, Takeshi Sunami, 2012, Langmuir : the ACS journal of surfaces and colloids.

Construction of a gene screening system using giant unilamellar liposomes and a fluorescence-activated cell sorter.

T. Yomo, T. Matsuura, T. Sunami, 2012, Analytical chemistry.

Class III Polyphosphate Kinase 2 Enzymes Catalyze the Pyrophosphorylation of Adenosine‐5′‐Monophosphate

K. Harada, T. Matsuura, Yasuhiko Kato, 2019, Chembiochem : a European journal of chemical biology.

Symbiotic bacteria contribute to increasing the population size of a freshwater crustacean, Daphnia magna.

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2015, Environmental microbiology reports.

Functional Qβ replicase genetically fusing essential subunits EF-Ts and EF-Tu with β-subunit

T. Yomo, H. Kita, I. Urabe, 2006 .

Roles of and cross-talk between ecdysteroid and sesquiterpenoid pathways in embryogenesis of branchiopod crustacean Daphnia magna

T. Matsuura, Yasuhiko Kato, Hajime Watanabe, 2020, PloS one.

Population analysis of structural properties of giant liposomes by flow cytometry.

Masanori Fujinami, Tetsuya Yomo, Koichi Oguma, 2009, Langmuir : the ACS journal of surfaces and colloids.

Quantitative study of the structure of multilamellar giant liposomes as a container of protein synthesis reaction.

Kazufumi Hosoda, Tetsuya Yomo, Tomoaki Matsuura, 2008, Langmuir : the ACS journal of surfaces and colloids.

Simple Method for the Creation of a Bacteria-Sized Unilamellar Liposome with Different Proteins Localized to the Respective Sides of the Membrane.

T. Matsuura, K. Hori, Yoshikazu Tanaka, 2023, ACS synthetic biology.

Bottom-up creation of an artificial cell covered with the adhesive bacterionanofiber protein AtaA.

T. Matsuura, Masahito Ishikawa, K. Hori, 2019, Journal of the American Chemical Society.

Importance of Translation–Replication Balance for Efficient Replication by the Self‐Encoded Replicase

T. Yomo, H. Kita, Kazufumi Hosoda, 2008, Chembiochem : a European journal of chemical biology.

Genomic Integration and Germline Transmission of Plasmid Injected into Crustacean Daphnia magna Eggs

Tomoaki Matsuura, Yasuhiko Kato, T. Matsuura, 2012, PloS one.

Identification of giant unilamellar vesicles with permeability to small charged molecules

T. Yomo, Hiroaki Suzuki, T. Matsuura, 2014 .

The Evolutionary Enhancement of Genotype–Phenotype Linkages in the Presence of Multiple Copies of Genetic Material

Tetsuya Yomo, Norikazu Ichihashi, Tomoaki Matsuura, 2014, Chembiochem : a European journal of chemical biology.

Comprehensive Analysis of the Effects of Escherichia coli ORFs on Protein Translation Reaction*S

N. Ono, T. Yomo, H. Mori, 2008, Molecular & Cellular Proteomics.

Chapter 2 - Detection and analysis of protein synthesis and RNA replication in giant liposomes.

T. Yomo, Hiroaki Suzuki, H. Kita, 2009, Methods in enzymology.

Chemistry Chemistry of " Origins of Life "

T. Matsuura, Tomoaki Matsuura, 2014 .

α‐Complementation in an Artificial Genome Replication System in Liposomes

T. Yomo, T. Matsuura, N. Ichihashi, 2012, Chembiochem : a European journal of chemical biology.

ePURE_JSBML: A Tool for Constructing a Deterministic Model of a Reconstituted Escherichia coli Protein Translation System with a User‐Specified Nucleic Acid Sequence

Yoshihiro Shimizu, T. Matsuura, Naoki Tanimura, 2022, Advanced biology.

Membrane Curvature Affects the Formation of α-Hemolysin Nanopores.

T. Yomo, T. Matsuura, S. Fujii, 2015, ACS chemical biology.

In vitro directed evolution of alpha-hemolysin by liposome display

T. Yomo, T. Matsuura, S. Fujii, 2015, Biophysics.

Functional Qbeta replicase genetically fusing essential subunits EF-Ts and EF-Tu with beta-subunit.

T. Yomo, H. Kita, I. Urabe, 2006, Journal of bioscience and bioengineering.

TALEN-mediated knock-in via non-homologous end joining in the crustacean Daphnia magna

Tomoaki Matsuura, Yasuhiko Kato, T. Matsuura, 2016, Scientific Reports.

Identification of conditions for efficient cell-sized liposome preparation using commercially available reconstituted in vitro transcription-translation system.

Sabrina Galiñanes Reyes, T. Matsuura, T. Kanamori, 2021, Journal of bioscience and bioengineering.

Visualization of ecdysteroid activity using a reporter gene in the crustacean, Daphnia.

Tomoaki Matsuura, Yasuhiko Kato, T. Matsuura, 2014, Marine environmental research.