H. Toju

发表

Core microbiomes for sustainable agroecosystems

Y. Onoda, Yang Bai, E. Kiers, 2018, Nature Plants.

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

Satoshi Yamamoto, Hirotoshi Sato, Hirokazu Toju, 2012, PloS one.

Network hubs in root-associated fungal metacommunities

H. Toju, A. S. Tanabe, Hirotoshi Sato, 2018, bioRxiv.

Assembly of complex plant–fungus networks

Paulo R. Guimarães, Jens M. Olesen, Hirokazu Toju, 2014, Nature Communications.

Below-ground plant–fungus network topology is not congruent with above-ground plant–animal network topology

J. Olesen, P. Guimarães, H. Toju, 2015, Science Advances.

How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants

Kohmei Kadowaki, Kiyokazu Agata, Satoshi Yamamoto, 2013, Ecology and evolution.

Community composition of root-associated fungi in a Quercus-dominated temperate forest: “codominance” of mycorrhizal and root-endophytic fungi

Akifumi S. Tanabe, Kohmei Kadowaki, H. Toju, 2013, Ecology and evolution.

Convergence and contrast in the community structure of Bacteria, Fungi and Archaea along a tropical elevation-climate Along

P. Vitousek, O. Chadwick, H. Toju, 2017 .

Ericaceous plant–fungus network in a harsh alpine–subalpine environment

Akifumi S. Tanabe, H. Toju, A. S. Tanabe, 2016, Molecular ecology.

Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons

H. Toju, K. Takagi, N. Katayama, 2016, PloS one.

“Candidatus Curculioniphilus buchneri,” a Novel Clade of Bacterial Endocellular Symbionts from Weevils of the Genus Curculio

T. Fukatsu, N. Nikoh, R. Koga, 2009, Applied and Environmental Microbiology.

DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

H. Toju, Y. Baba, Hirokazu Toju, 2018, Zoological Letters.

Bioactive polyamine production by a novel hybrid system comprising multiple indigenous gut bacterial strategies

Y. Benno, H. Toju, Yusuke Kitada, 2018, Science Advances.

Stable states and keystone species in soil microbiomes 1 of agroecosystems 2

H. Toju, S. Yoshida, Kenta Suzuki, 2022 .

Beneficial associations between Brassicaceae plants and fungal endophytes under nutrient-limiting conditions: evolutionary origins and host-symbiont molecular mechanisms.

H. Toju, K. Hiruma, Yoshihiro Kobae, 2018, Current opinion in plant biology.

Core species and interactions prominent in fish-associated microbiome dynamics

H. Toju, Kenta Suzuki, Hiroaki Fujita, 2022, bioRxiv.

Effects of source sample amount on biodiversity surveys of bacteria, fungi, and nematodes in soil ecosystems

H. Toju, Takuya Kageyama, 2022, bioRxiv.

Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics

E. Kiers, M. Yamamichi, H. Toju, 2022, bioRxiv.

Dynamics of species-rich predator–prey networks and seasonal alternations of keystone species

H. Toju, Sayaka Suzuki, Y. Baba, 2022, bioRxiv.

Dynamics of interaction networks and species’ contributions to community-scale flexibility

H. Toju, Y. Baba, Sayaka S. Suzuki, 2022, bioRxiv.

Plant–soil feedbacks between arbuscular- and ecto-mycorrhizal communities

Kohmei Kadowaki, H. Toju, A. S. Tanabe, 2017, bioRxiv.

Natural selection drives the fine-scale divergence of a coevolutionary arms race involving a long-mouthed weevil and its obligate host plant

H. Toju, Hirokazu Toju, 2009, BMC Evolutionary Biology.

Fine-Scale Local Adaptation of Weevil Mouthpart Length and Camellia Pericarp Thickness: Altitudinal Gradient of a Putative Arms Race

H. Toju, Hirokazu Toju, 2008, Evolution; international journal of organic evolution.

Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes

Chiharu Ishii, Masato S. Abe, Hirokazu Toju, 2020, Frontiers in Microbiology.

Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance

H. Toju, K. Narisawa, K. Hiruma, 2021, bioRxiv.

Factors Influencing Leaf- and Root-Associated Communities of Bacteria and Fungi Across 33 Plant Orders in a Grassland

H. Toju, H. Kurokawa, T. Kenta, 2018, bioRxiv.

Timing of evolutionary innovation: scenarios of evolutionary diversification in a species-rich fungal clade, Boletales.

H. Toju, Hirotoshi Sato, Hirokazu Toju, 2019, The New phytologist.

Host shifts enhance diversification of ectomycorrhizal fungi: diversification rate analysis of the ectomycorrhizal fungal genera Strobilomyces and Afroboletus with an 80-gene phylogeny.

Akifumi S. Tanabe, H. Toju, A. S. Tanabe, 2017, The New phytologist.

Network hubs in root-associated fungal metacommunities

Akifumi S. Tanabe, H. Toju, A. S. Tanabe, 2018, Microbiome.

Contrasting Diversity and Host Association of Ectomycorrhizal Basidiomycetes versus Root-Associated Ascomycetes in a Dipterocarp Rainforest

Akifumi S. Tanabe, H. Toju, A. S. Tanabe, 2015, PloS one.

Network modules and hubs in plant-root fungal biomes

Satoshi Yamamoto, Takashi Hayakawa, Hirokazu Toju, 2016, Journal of The Royal Society Interface.

Title Bioactive polyamine production by a novel hybrid systemcomprising multiple indigenous gut bacterial strategies

Y. Benno, H. Toju, Yusuke Kitada, 2019 .

Species-rich networks and eco-evolutionary synthesis at the metacommunity level

Akihiko Mougi, Hirokazu Toju, Paulo R Guimarães, 2017, Nature Ecology &Evolution.

Core microbiomes for sustainable agroecosystems

Y. Onoda, Yang Bai, E. Kiers, 2018, Nature Plants.

Leaf-associated microbiomes of grafted tomato plants

H. Toju, M. Notaguchi, Koji Okayasu, 2019, Scientific Reports.

Do below-ground genotypes influence above-ground microbiomes of grafted tomato plants?

H. Toju, M. Notaguchi, Koji Okayasu, 2018, bioRxiv.

Diet disparity among sympatric herbivorous cichlids in the same ecomorphs in Lake Tanganyika: amplicon pyrosequences on algal farms and stomach contents

Akifumi S. Tanabe, H. Toju, A. S. Tanabe, 2014, BMC Biology.

Climatic Gradients of Arms Race Coevolution

S. Ueno, H. Toju, T. Yahara, 2011, The American Naturalist.

Alternative stable states of soil microbiomes and ecosystem functions

H. Toju, S. Yoshida, Kenta Suzuki, 2023, bioRxiv.

Diversity and infection prevalence of endosymbionts in natural populations of the chestnut weevil: relevance of local climate and host plants

T. Fukatsu, H. Toju, 2011, Molecular ecology.

Composition and Diversity of Soil Fungi in Dipterocarpaceae-Dominated Seasonal Tropical Forests in Thailand

H. Toju, A. S. Tanabe, Hirotoshi Sato, 2018, Microbes and environments.

Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics

E. Kiers, M. Yamamichi, H. Toju, 2023, bioRxiv.

Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants

Akifumi S. Tanabe, H. Toju, A. S. Tanabe, 2013, PloS one.

Diversity and Spatial Structure of Belowground Plant–Fungal Symbiosis in a Mixed Subtropical Forest of Ectomycorrhizal and Arbuscular Mycorrhizal Plants

Akifumi S. Tanabe, H. Toju, A. S. Tanabe, 2014, PloS one.

Convergence and contrast in the community structure of Bacteria, Fungi and Archaea along a tropical elevation‐climate gradient

P. Vitousek, O. Chadwick, H. Toju, 2017, FEMS microbiology ecology.

Structure of phyllosphere fungal communities in a tropical dipterocarp plantation: A massively parallel next-generation sequencing analysis

Akifumi S. Tanabe, Y. Isagi, H. Toju, 2016 .

Spatial Segregation and Aggregation of Ectomycorrhizal and Root-Endophytic Fungi in the Seedlings of Two Quercus Species

Akifumi S. Tanabe, Kohmei Kadowaki, H. Toju, 2014, PloS one.

Detection of the horizontal spatial structure of soil fungal communities in a natural forest

Akifumi S. Tanabe, Kohmei Kadowaki, H. Toju, 2014, Population Ecology.

Facilitative interaction networks in experimental microbial community dynamics

E. Kiers, M. Yamamichi, H. Toju, 2023, bioRxiv.

Priority effects can persist across floral generations in nectar microbial metacommunities

Marie-Pierre L. Gauthier, Manpreet K. Dhami, T. Fukami, 2018 .

Do arms races punctuate evolutionary stasis? Unified insights from phylogeny, phylogeography and microevolutionary processes

H. Toju, T. Sota, 2009, Molecular ecology.

Imbalance of Predator and Prey Armament: Geographic Clines in Phenotypic Interface and Natural Selection

H. Toju, T. Sota, 2005, The American Naturalist.

Arms race between weevil rostrum length and camellia pericarp thickness: Geographical cline and theory.

H. Toju, A. Sasaki, N. Iseki, 2011, Journal of theoretical biology.

METAPOPULATION STRUCTURE OF A SEED–PREDATOR WEEVIL AND ITS HOST PLANT IN ARMS RACE COEVOLUTION

S. Ueno, H. Toju, T. Sota, 2011, Evolution; international journal of organic evolution.

Phylogeography and the geographic cline in the armament of a seed‐predatory weevil: effects of historical events vs. natural selection from the host plant

H. Toju, T. Sota, Hirokazu Toju, 2006, Molecular ecology.

Root-Associated Fungi Shared Between Arbuscular Mycorrhizal and Ectomycorrhizal Conifers in a Temperate Forest

H. Toju, Hirotoshi Sato, Hirokazu Toju, 2018, Front. Microbiol..

High-throughput DNA barcoding for ecological network studies

H. Toju, Hirokazu Toju, 2015, Population Ecology.

Diversification of endosymbiosis: replacements, co-speciation and promiscuity of bacteriocyte symbionts in weevils

Akifumi S. Tanabe, T. Fukatsu, H. Toju, 2013, The ISME Journal.

Structural diversity across arbuscular mycorrhizal, ectomycorrhizal, and endophytic plant–fungus networks

Akifumi S. Tanabe, H. Toju, A. S. Tanabe, 2018, BMC Plant Biology.

Consortia of anti-nematode fungi and bacteria in the rhizosphere of soybean plants attacked by root-knot nematodes

H. Toju, Yukiko Tanaka, 2018, bioRxiv.

Isotopic and molecular data support mixotrophy in Ophioglossum at the sporophytic stage.

H. Toju, A. S. Tanabe, I. Tayasu, 2020, The New phytologist.

Network hubs in root-associated fungal metacommunities

H. Toju, A. S. Tanabe, Hirotoshi Sato, 2018, bioRxiv.

Mycorrhizal fungi mediate the direction and strength of plant–soil feedbacks differently between arbuscular mycorrhizal and ectomycorrhizal communities

Akifumi S. Tanabe, Kohmei Kadowaki, H. Toju, 2018, Communications Biology.

Metagenomic analysis of ecological niche overlap and community collapse in microbiome dynamics

E. Kiers, M. Yamamichi, H. Toju, 2023, bioRxiv.

Deterministic and stochastic processes generating alternative states of microbiomes

H. Toju, Hiroaki Fujita, Ibuki Hayashi, 2023, bioRxiv.

DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs

H. Toju, Y. Baba, 2018, Zoological Letters.

Eukaryotic diversity in late Pleistocene marine sediments around a shallow methane hydrate deposit in the Japan Sea

H. Toju, Y. Suzuki, S. Yamamoto, 2017, Geobiology.

Weevils and camellias in a Darwin’s race: model system for the study of eco-evolutionary interactions between species

H. Toju, 2011, Ecological Research.

Adaptive divergence of scaling relationships mediates the arms race between a weevil and its host plant

H. Toju, T. Sota, 2006, Biology Letters.

Structural diversity across arbuscular mycorrhizal, ectomycorrhizal, and endophytic plant–fungus networks

H. Toju, A. S. Tanabe, Satoshi Yamamoto, 2018, BMC Plant Biology.

Interpopulation variation in predator foraging behaviour promotes the evolutionary divergence of prey

H. Toju, 2007, Journal of evolutionary biology.

Dynamics of species-rich predator-prey networks and seasonal alternations of core species.

H. Toju, Y. Baba, Sayaka S Suzuki, 2023, Nature ecology & evolution.

Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest

H. Toju, A. S. Tanabe, Satoshi Yamamoto, 2013, PloS one.

Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics

E. Kiers, M. Yamamichi, H. Toju, 2023, Microbiome.

Publisher Correction: Core microbiomes for sustainable agroecosystems

Y. Onoda, Yang Bai, E. Kiers, 2018, Nature Plants.

Soil Prokaryotic and Fungal Biome Structures Associated with Crop Disease Status across the Japan Archipelago

H. Toju, Kenta Suzuki, Hiroaki Fujita, 2023, bioRxiv.

Core species and interactions prominent in fish-associated microbiome dynamics

H. Toju, Kenta Suzuki, Hiroaki Fujita, 2023, Microbiome.

Leaf-associated microbiomes of grafted tomato plants

H. Toju, M. Notaguchi, Koji Okayasu, 2019, Scientific Reports.