I. Bradbury

发表

Behavioural variation among divergent European and North American farmed and wild Atlantic salmon (Salmo salar) populations

I. Fleming, Shahinur S Islam, B. Wringe, 2020 .

Contrasting larval transport in demersal fish and benthic invertebrates: the roles of behaviour and advective processes in determining spatial pattern

Paul V. R. Snelgrove, Ian Bradbury, P. Snelgrove, 2001 .

Distinct early life stage gene expression effects of hybridization among European and North American farmed and wild Atlantic salmon populations

I. Fleming, Shahinur S Islam, I. Bradbury, 2022, Molecular ecology.

Chromosome polymorphisms track trans‐Atlantic divergence and secondary contact in Atlantic salmon

S. Lien, I. Bradbury, P. Bentzen, 2019, Molecular ecology.

Predicting the impacts of escaped farmed Atlantic salmon on wild salmon populations

N. Jeffery, B. Wringe, I. Bradbury, 2018 .

Ancient chromosomal rearrangement associated with local adaptation of a postglacially colonized population of Atlantic Cod in the northwest Atlantic

S. Lien, I. Bradbury, P. Bentzen, 2018, Molecular ecology.

Genomic tools for management and conservation of Atlantic cod in a coastal marine protected area

S. Lien, I. Bradbury, P. Bentzen, 2018, Canadian Journal of Fisheries and Aquatic Sciences.

Discrete spatial dynamics in a marine broadcast spawner: Re-evaluating scales of connectivity and habitat associations in Atlantic cod (Gadus morhua L.) in coastal Newfoundland

P. Snelgrove, I. Bradbury, D. Côté, 2008 .

Otolith elemental composition and adult tagging reveal spawning site fidelity and estuarine dependency in rainbow smelt

S. Campana, I. Bradbury, P. Bentzen, 2008 .

WORKING GROUP ON APPLICATION OF GENETICS IN FISHERIES AND AQUACULTURE (WGAGFA)

Catherine M. Purcell, Iveta, Houston, 2020 .

Temporal genetic differentiation: continuous v. discontinuous spawning runs in anadromous rainbow smelt Osmerus mordax (Mitchill)

Mark W. Coulson, I. Bradbury, P. Bentzen, 2006 .

Transport and development of eggs and larvae of Atlantic cod, Gadus morhua, in relation to spawning time and location in coastal Newfoundland

P. Snelgrove, I. Bradbury, Sandra Fraser, 2000 .

Evidence for spatial coherence in time trends of marine life history traits of Atlantic salmon in the North Atlantic

I. Bradbury, E. Rivot, E. Prévost, 2019, Fish and Fisheries.

Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature

P. Snelgrove, S. Bowman, J. Hutchings, 2010, Proceedings of the Royal Society B: Biological Sciences.

Regional variation in otolith geochemistry of juvenile Atlantic cod (Gadus morhua) in coastal Newfoundland

S. Campana, P. Snelgrove, I. Bradbury, 2016 .

Resolving natal tags using otolith geochemistry in an estuarine fish, rainbow smelt Osmerus mordax

S. Campana, P. Snelgrove, I. Bradbury, 2011 .

Annotated mitochondrial genome assemblies for two sand lances (genus: Ammodytes) from the northwest Atlantic

I. Bradbury, P. Bentzen, Jackie Lighten, 2016, Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis.

Trans-oceanic genomic divergence of Atlantic cod ecotypes is associated with large inversions

K. Jakobsen, J. Hutchings, I. Bradbury, 2017, Heredity.

The Genomic Consistency of the Loss of Anadromy in an Arctic Fish (Salvelinus alpinus)

B. Koop, I. Bradbury, C. Nugent, 2022, The American Naturalist.

Evolutionary genetics of immunological supertypes reveals two faces of the Red Queen

Alexander S. T. Papadopulos, A. Hendry, I. Bradbury, 2017, Nature Communications.

Divergent and linked selection shape patterns of genomic differentiation between European and North American Atlantic salmon (Salmo salar)

I. Bradbury, P. Bentzen, S. Lehnert, 2020, Molecular ecology.

Demographic and genetic description of Greenland's only indigenous Atlantic salmon Salmo salar population.

I. Bradbury, J. Arnekleiv, J. Davidsen, 2018, Journal of fish biology.

Rebuilding Atlantic Cod: Lessons from a Spawning Ground in Coastal Newfoundland

P. Snelgrove, I. Bradbury, B. deYoung, 2008 .

Parallel genomic basis of age at maturity across spatial scales in Atlantic Salmon

A. Messmer, I. Bradbury, P. Bentzen, 2022, bioRxiv.

Ocean in response to temperature Parallel adaptive evolution of Atlantic cod on both sides of the Supplementary data tml

S. Bowman, J. Hutchings, I. Bradbury, 2010 .

Fecundity of Atlantic cod (Gadus morhua) farmed for stock enhancement in Newfoundland bays

I. Bradbury, J. Wroblewski, H. Hiscock, 1999 .

A putative structural variant and environmental variation associated with genomic divergence across the Northwest Atlantic in Atlantic Halibut

B. Wringe, I. Bradbury, P. Bentzen, 2021 .

Range-wide regional assignment of Atlantic salmon (Salmo salar) using genome wide single-nucleotide polymorphisms

N. Jeffery, L. Bernatchez, B. Wringe, 2018, Fisheries Research.

Assessing effects of genetic, environmental, and biotic gradients in species distribution modelling

I. Bradbury, J. B. Lowen, R. Stanley, 2019, ICES Journal of Marine Science.

Draft Development and evaluation of SNP panels for the detection of hybridization between wild and escaped Atlantic salmon ( Salmo salar ) in the West Atlantic

E. Anderson, N. Jeffery, B. Wringe, 2018 .

Genomic evidence of recent European introgression into North American farmed and wild Atlantic salmon

I. Fleming, A. Messmer, B. Wringe, 2022, Evolutionary applications.

Differences in energy acquisition and storage of farm, wild, and hybrid Atlantic salmon competing in the wild

I. Fleming, A. Messmer, I. Bradbury, 2022, Canadian Journal of Fisheries and Aquatic Sciences.

Synchronized hatch and its ecological significance in rainbow smelt Osmerus mordax in St. Mary's Bay, Newfoundland

S. Campana, P. Snelgrove, I. Bradbury, 2004 .

megasat: automated inference of microsatellite genotypes from sequence data

R. Beiko, I. Bradbury, P. Bentzen, 2017, Molecular ecology resources.

Range-wide parallel climate-associated genomic clines in Atlantic salmon

N. Jeffery, L. Bernatchez, R. Beiko, 2017, Royal Society Open Science.

Environmentally mediated trends in otolith composition of juvenile Atlantic cod (Gadus morhua)

P. Snelgrove, I. Bradbury, S. Killen, 2015 .

A molecular assessment of infectious agents carried by Atlantic salmon at sea and in three eastern Canadian rivers, including aquaculture escapees and North American and European origin wild stocks

I. Bradbury, K. Miller, A. Teffer, 2020 .

A climate-associated multispecies cryptic cline in the northwest Atlantic

N. Jeffery, P. Snelgrove, L. Bernatchez, 2018, Science Advances.

Applications of random forest feature selection for fine‐scale genetic population assignment

Marie Clément, Robert G Beiko, R. Beiko, 2017, Evolutionary applications.

Supergene origin and maintenance in Atlantic cod

K. Jakobsen, I. Bradbury, J. M. Barth, 2022, Nature ecology & evolution.

Preferential amplification of repetitive DNA during whole genome sequencing library creation from historic samples

I. Bradbury, O. S. Kjesbu, J. A. Godiksen, 2016 .

Palindromic Sequence Artifacts Generated during Next Generation Sequencing Library Preparation from Historic and Ancient DNA

Kjetill S. Jakobsen, Alexander J. Nederbragt, Bastiaan Star, 2014, PloS one.

Global patterns in marine dispersal estimates: the influence of geography, taxonomic category and life history

S. Campana, P. Snelgrove, I. Bradbury, 2008, Proceedings of the Royal Society B: Biological Sciences.

Low genetic connectivity in an estuarine fish with pelagic larvae

S. Campana, I. Bradbury, P. Bentzen, 2008 .

Genomic evidence of hybridization between two independent invasions of European green crab (Carcinus maenas) in the Northwest Atlantic

N. Jeffery, B. Wringe, I. Bradbury, 2017, Heredity.

Temporal dynamics of genetic clines of invasive European green crab (Carcinus maenas) in eastern North America

N. Jeffery, A. Blakeslee, B. Wringe, 2018, Evolutionary applications.

Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fish Leucoraja ocellata (Rajidae)

I. Bradbury, P. Bentzen, C. van Oosterhout, 2016, Royal Society Open Science.

Chromosome level reference of Atlantic halibut Hippoglossus hippoglossus provides insight into the evolution of sexual determination systems

A. Messmer, B. Wringe, I. Bradbury, 2021, Molecular ecology resources.

Reference genome of lumpfish Cyclopterus lumpus Linnaeus provides evidence of male heterogametic sex determination through the AMH pathway

A. Messmer, I. Bradbury, P. Bentzen, 2021, Molecular ecology resources.

Oceanographic variation influences spatial genomic structure in the sea scallop, Placopecten magellanicus

P. Snelgrove, R. Beiko, I. Bradbury, 2018, Ecology and evolution.

Identifying patterns of dispersal, connectivity and selection in the sea scallop, Placopecten magellanicus, using RADseq‐derived SNPs

N. Jeffery, P. Snelgrove, I. Bradbury, 2016, Evolutionary applications.

Does fish larval dispersal differ between high and low latitudes?

Michael J. Miller, Claire B Paris-Limouzy, J. Caselle, 2013, Proceedings of the Royal Society B: Biological Sciences.

Limited genetic parallelism underlies recent, repeated incipient speciation in geographically proximate populations of an Arctic fish (Salvelinus alpinus)

B. Koop, I. Bradbury, C. Nugent, 2020, Molecular ecology.

The potential direct and indirect genetic consequences for native Newfoundland Atlantic Salmon from interbreeding with European-origin farm escapes

I. Bradbury, E. Verspoor, P. McGinnity, 2015 .

Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic

N. Stenseth, M. Pinsky, K. Jakobsen, 2021, Proceedings of the National Academy of Sciences.

Disentangling structural genomic and behavioural barriers in a sea of connectivity

D. Righton, J. Metcalfe, K. Jakobsen, 2019, Molecular ecology.

Chromosome polymorphisms track trans-Atlantic divergence, admixture and adaptive evolution in salmon

S. Lien, I. Bradbury, P. Bentzen, 2018, bioRxiv.

Long Distance Linkage Disequilibrium and Limited Hybridization Suggest Cryptic Speciation in Atlantic Cod

P. Snelgrove, S. Bowman, J. Hutchings, 2014, PloS one.

Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish

P. Snelgrove, S. Bowman, J. Hutchings, 2013, Evolutionary applications.

Influence of climate and abundance on migration timing of adult Atlantic salmon (Salmo salar) among rivers in Newfoundland and Labrador

C. Schwarz, I. Bradbury, M. Robertson, 2017 .

Transatlantic secondary contact in Atlantic Salmon, comparing microsatellites, a single nucleotide polymorphism array and restriction‐site associated DNA sequencing for the resolution of complex spatial structure

L. Bernatchez, I. Bradbury, E. Verspoor, 2015, Molecular ecology.

Landscape structure and climatic variation determine Atlantic salmon genetic connectivity in the Northwest Atlantic

C. E. Bourgeois, I. Bradbury, J. Dempson, 2014 .

Genomic and machine learning-based screening of aquaculture associated introgression into at-risk wild North American Atlantic salmon (Salmo salar) populations

B. Wringe, I. Bradbury, P. Bentzen, 2022, bioRxiv.

Environmentally associated chromosomal structural variation influences fine‐scale population structure of Atlantic Salmon (Salmo salar)

S. Lien, I. Bradbury, P. Bentzen, 2021, Molecular ecology.

Multiple decades of stocking has resulted in limited hatchery introgression in wild brook trout (Salvelinus fontinalis) populations of Nova Scotia

I. Bradbury, P. Bentzen, S. Baillie, 2020, Evolutionary applications.

Development and evaluation of SNP panels for the detection of hybridization between wild and escaped Atlantic salmon (Salmo salar) in the western Atlantic

E. Anderson, N. Jeffery, B. Wringe, 2019, Canadian Journal of Fisheries and Aquatic Sciences.

Environmental extremes drive population structure at the northern range limit of Atlantic salmon in North America

R. Beiko, I. Bradbury, P. Bentzen, 2018, Molecular ecology.

PMERGE: Computational filtering of paralogous sequences from RAD‐seq data

R. Beiko, I. Bradbury, P. Bentzen, 2018, Ecology and evolution.

Genotyping‐by‐sequencing of genome‐wide microsatellite loci reveals fine‐scale harvest composition in a coastal Atlantic salmon fishery

E. Anderson, N. Jeffery, R. Beiko, 2018, Evolutionary applications.

Supergene origin and maintenance in Atlantic cod

K. Jakobsen, I. Bradbury, J. M. Barth, 2022, Nature Ecology & Evolution.

Origin and fate of supergenes in Atlantic cod

K. Jakobsen, I. Bradbury, J. M. Barth, 2021, bioRxiv.

Population structure of Atlantic mackerel inferred from RAD‐seq‐derived SNP markers: effects of sequence clustering parameters and hierarchical SNP selection

Naiara Rodríguez-Ezpeleta, Iñaki Mendibil, Xabier Irigoien, 2016, Molecular ecology resources.

Genetic evidence of local exploitation of Atlantic salmon in a coastal subsistence fishery in the Northwest Atlantic

L. Bernatchez, I. Bradbury, J. Candy, 2015 .

Evaluating SNP ascertainment bias and its impact on population assignment in Atlantic cod, Gadus morhua

P. Snelgrove, S. Bowman, I. Bradbury, 2011, Molecular ecology resources.

Extensive hybridization following a large escape of domesticated Atlantic salmon in the Northwest Atlantic

E. Anderson, N. Jeffery, I. Fleming, 2018, Communications Biology.

Evidence for divergence and adaptive isolation in post-glacially derived bimodal allopatric and sympatric rainbow smelt populations

Mark W. Coulson, I. Bradbury, A. Cook, 2010 .

Structural and functional connectivity of marine fishes within a semi-enclosed Newfoundland fjord.

P. Snelgrove, I. Bradbury, P. Bentzen, 2009, Journal of fish biology.

Using movement, diet, and genetic analyses to understand Arctic charr responses to ecosystem change

I. Bradbury, D. Côté, J. Dempson, 2021, Marine Ecology Progress Series.

A migration-associated supergene reveals loss of biocomplexity in Atlantic cod

S. Lien, Robert Fairweather, I. Bradbury, 2018, Science Advances.

Modular chromosome rearrangements reveal parallel and nonparallel adaptation in a marine fish

S. Lien, Robert Fairweather, B. Wringe, 2020, Ecology and evolution.

RADProc: A computationally efficient de novo locus assembler for population studies using RADseq data

R. Beiko, I. Bradbury, P. Bentzen, 2019, Molecular ecology resources.

Whole genome sequencing reveals fine-scale climate associated adaptive divergence near the range limits of a temperate reef fish

B. Wringe, I. Bradbury, P. Bentzen, 2022, bioRxiv.

Contemporary nuclear and mitochondrial genetic clines in a north temperate estuarine fish reflect Pleistocene vicariance

Mark W. Coulson, S. Campana, I. Bradbury, 2011 .

Beyond hybridization: the genetic impacts of nonreproductive ecological interactions of salmon aquaculture on wild populations

I. Fleming, I. Bradbury, P. McGinnity, 2020 .

Range‐wide genomic data synthesis reveals transatlantic vicariance and secondary contact in Atlantic cod

J. Hemmer-Hansen, G. Carvalho, Robert Fairweather, 2018, Ecology and evolution.

RAD sequencing reveals genomewide divergence between independent invasions of the European green crab (Carcinus maenas) in the Northwest Atlantic

N. Jeffery, R. Beiko, I. Bradbury, 2017, Ecology and evolution.

genepopedit: a simple and flexible tool for manipulating multilocus molecular data in R

N. Jeffery, B. Wringe, I. Bradbury, 2017, Molecular ecology resources.

Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci

Jean-Sébastien Moore, Ian Bradbury, Patrick O'Reilly, 2014, Molecular ecology.

Non-linear genetic isolation by distance: implications for dispersal estimation in anadromous and marine fish populations

I. Bradbury, P. Bentzen, 2007 .

Resolving fine‐scale population structure and fishery exploitation using sequenced microsatellites in a northern fish

N. Jeffery, P. Snelgrove, B. Koop, 2020, Evolutionary applications.

Temporal variation in fish egg and larval production by pelagic and bottom spawners in a large Newfoundland coastal embayment

P. Snelgrove, I. Bradbury, B. deYoung, 2008 .

Working group on North Atlantic salmon (WGNAS)

N. Hanson, I. Bradbury, A. Walker, 2019 .

Larval transport, vertical distribution, and localized recruitment in anadromous rainbow smelt (Osmerus mordax)

S. Campana, P. Snelgrove, I. Bradbury, 2006 .

Integrating seascape resistances and gene flow to produce area-based metrics of functional connectivity for marine conservation planning

N. Jeffery, R. Beiko, I. Bradbury, 2023, Landscape Ecology.

Migration effort and wild population size influence the prevalence of hybridization between escaped farmed and wild Atlantic salmon

I. Fleming, B. Wringe, I. Bradbury, 2018, Aquaculture Environment Interactions.

Model-based evaluation of the genetic impacts of farm-escaped Atlantic salmon on wild populations

I. Fleming, A. Messmer, I. Bradbury, 2020, Aquaculture Environment Interactions.

Estimating the relative fitness of escaped farmed salmon offspring in the wild and modelling the consequences of invasion for wild populations

I. Fleming, B. Wringe, I. Bradbury, 2019, Evolutionary applications.

Early-life fitness trait variation among divergent European and North American farmed and Newfoundland wild Atlantic salmon populations

I. Fleming, B. Wringe, I. Bradbury, 2021 .

Complete mitochondrial genomes for Icelus spatula, Aspidophoroides olrikii and Leptoclinus maculatus: pan-Arctic marine fishes from Canadian waters

I. Bradbury, P. Bentzen, S. Baillie, 2016, Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis.

Linking eelgrass decline and impacts on associated fish communities to European green crab Carcinus maenas invasion

P. Snelgrove, I. Bradbury, C. McKenzie, 2016 .

Genomewide evidence of environmentally mediated secondary contact of European green crab (Carcinus maenas) lineages in eastern North America

N. Jeffery, B. Wringe, I. Bradbury, 2018, Evolutionary applications.

parallelnewhybrid: an R package for the parallelization of hybrid detection using newhybrids

E. Anderson, N. Jeffery, B. Wringe, 2017, Molecular ecology resources.

Fine-scale temperature-associated genetic structure between inshore and offshore populations of sea scallop (Placopecten magellanicus)

N. Jeffery, B. Wringe, I. Bradbury, 2018, Heredity.

Complex post-larval dispersal processes in Atlantic cod revealed by age-based genetics and relatedness analysis

P. Snelgrove, J. Hutchings, I. Bradbury, 2016 .

Passive and active behavioural contributions to patchiness and spatial pattern during the early life history of marine fishes

P. Snelgrove, P. Pepin, I. Bradbury, 2003 .

Geography, environment, and colonization history interact with morph type to shape genomic variation in an Arctic fish

I. Bradbury, D. Ruzzante, T. Kess, 2023, Molecular ecology.

The influence of temperature on advective loss of Atlantic cod (Gadus morhua) eggs from the inshore environment

P. Snelgrove, I. Bradbury, Sandra Fraser, 2001 .

Genetic stock identification of Atlantic salmon caught in the Faroese fishery

I. Bradbury, L. Hansen, J. A. Jacobsen, 2017 .

Genomic evidence of past and future climate-linked loss in a migratory Arctic fish

P. Snelgrove, A. Messmer, I. Bradbury, 2021, Nature Climate Change.

hybriddetective: A workflow and package to facilitate the detection of hybridization using genomic data in r

E. Anderson, N. Jeffery, B. Wringe, 2017, Molecular ecology resources.

Genomic basis of deep‐water adaptation in Arctic Charr (Salvelinus alpinus) morphs

B. Koop, A. Messmer, I. Bradbury, 2021, Molecular ecology.

Genetic mixed-stock analysis disentangles spatial and temporal variation in composition of the West Greenland Atlantic Salmon fishery

L. Bernatchez, I. Bradbury, J. Dempson, 2016 .

Genetic mixed stock analysis of an interceptory Atlantic salmon fishery in the Northwest Atlantic

L. Bernatchez, I. Bradbury, J. Dempson, 2016 .

Whole‐genome sequencing reveals fine‐scale environment‐associated divergence near the range limits of a temperate reef fish

B. Wringe, I. Bradbury, P. Bentzen, 2023, Molecular ecology.

Extensive hybridization following a large escape of domesticated Atlantic salmon in the Northwest Atlantic

N. Jeffery, I. Fleming, B. Wringe, 2018, Communications Biology.

Defining natal homing in marine fish populations: comment on Svedäng et al. (2007)

I. Bradbury, B. Laurel, 2007 .

Multifaceted framework for defining conservation units: An example from Atlantic salmon (Salmo salar) in Canada

B. Wringe, I. Bradbury, S. Lehnert, 2023, Evolutionary applications.

Genomic and machine learning-based screening of aquaculture-associated introgression into at-risk wild North American Atlantic salmon (Salmo salar) populations.

B. Wringe, I. Bradbury, P. Bentzen, 2023, Molecular ecology resources.

Range‐wide genomic data synthesis reveals transatlantic vicariance and secondary contact in Atlantic cod

G. Carvalho, Robert Fairweather, I. Bradbury, 2018, Ecology and evolution.

Environmental extremes drive population structure at the northern range limit of Atlantic salmon in North America

R. Beiko, I. Bradbury, P. Bentzen, 2018, Molecular ecology.

Fine-scale temperature-associated genetic structure between inshore and offshore populations of sea scallop (Placopecten magellanicus)

N. Jeffery, B. Wringe, I. Bradbury, 2018, Heredity.

Fine‐scale environmentally associated spatial structure of lumpfish (Cyclopterus lumpus) across the Northwest Atlantic

I. Bradbury, P. Bentzen, S. Consuegra, 2023, Evolutionary applications.

“Big” concerns with high latitude marine protected areas (MPAs): trends in connectivity and MPA size

Ian Bradbury, I. Bradbury, B. Laurel, 2006 .

Post-glacial recolonization and multiple scales of secondary contact contribute to contemporary Atlantic salmon (Salmo salar) genomic variation in North America

A. Messmer, B. Wringe, I. Bradbury, 2023, bioRxiv.

Genomic signatures and correlates of widespread population declines in salmon

N. Jeffery, S. Lien, I. Bradbury, 2019, Nature Communications.