B. Carstens

发表

Phylogenetic Model Choice: Justifying a Species Tree or Concatenation Analysis

Bryan C. Carstens, John D. McVay, B. Carstens, 2013 .

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.

Bryan C Carstens, B. Carstens, L. Knowles, 2007, Systematic biology.

How to fail at species delimitation

Bryan C. Carstens, B. Carstens, Tara A. Pelletier, 2013, Molecular ecology.

Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses

Bryan C. Carstens, B. Carstens, C. L. Richards, 2007 .

INTEGRATING COALESCENT AND ECOLOGICAL NICHE MODELING IN COMPARATIVE PHYLOGEOGRAPHY

Bryan C. Carstens, B. Carstens, C. L. Richards, 2007, Evolution; international journal of organic evolution.

Predicting amphibian intraspecific diversity with machine learning: Challenges and prospects for integrating traits, geography, and genetic data

Bryan C. Carstens, B. Carstens, Lisa N. Barrow, 2020, bioRxiv.

Supplemental Figure Legends

B. Carstens, Jordan D. Satler, M. Hedin, 2015 .

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 May 2009–31 July 2009

K. V. Subbarao, Emily S. Davis, Page E. Klug, 2009, Molecular ecology resources.

Phylogeographic model selection leads to insight into the evolutionary history of four-eyed frogs

B. Carstens, M. Thomé, 2016, Proceedings of the National Academy of Sciences.

SpedeSTEM: a rapid and accurate method for species delimitation

Bryan C. Carstens, B. Carstens, Daniel Ence, 2011, Molecular ecology resources.

An information‐theoretical approach to phylogeography

B. Carstens, N. Reid, HOLLY N. Stoute, 2009, Molecular ecology.

Objective choice of phylogeographic models.

B. O’Meara, B. Carstens, N. D. Jackson, 2017, Molecular phylogenetics and evolution.

Applications of next-generation sequencing to phylogeography and phylogenetics.

R. T. Brumfield, B. Carstens, J. McCormack, 2013, Molecular phylogenetics and evolution.

Posterior predictive checks of coalescent models: P2C2M, an R package

Bryan C. Carstens, Gregory L. Wheeler, B. Carstens, 2016, Molecular ecology resources.

Poor fit to the multispecies coalescent is widely detectable in empirical data.

Jeremy M. Brown, Bryan C. Carstens, Tara A Pelletier, 2014, Systematic biology.

Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats

Bryan C. Carstens, B. Carstens, Tanya Dewey, 2010, Systematic biology.

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow.

Bryan C Carstens, B. Carstens, A. Eckert, 2008, Molecular phylogenetics and evolution.

Diversification rates have no effect on the convergent evolution of foraging strategies in the most speciose genus of bats, Myotis *

B. Carstens, Ariadna E. Morales, M. Ruedi, 2019, Evolution; international journal of organic evolution.

Phylogeographic concordance factors quantify phylogeographic congruence among co‐distributed species in the Sarracenia alata pitcher plant system

B. Carstens, Jordan D. Satler, Jordan D. Satler, 2016, Evolution; international journal of organic evolution.

A road map for molecular ecology

Dany Garant, Loren H Rieseberg, Bryan C. Carstens, 2013, Molecular ecology.

Navigating the unknown: model selection in phylogeography

B. Carstens, L. Knowles, L. Knowles, 2010, Molecular ecology.

Community trees: Identifying codiversification in the Páramo dipteran community

Bryan C. Carstens, B. Carstens, N. Reid, 2016, Evolution; international journal of organic evolution.

Speciation with Gene Flow in North American Myotis Bats

Bryan C. Carstens, B. O’Meara, B. Carstens, 2016, Systematic biology.

Model choice for phylogeographic inference using a large set of models

Bryan C. Carstens, B. Carstens, Tara A. Pelletier, 2014, Molecular ecology.

The carnivorous plant described as Sarracenia alata contains two cryptic species

Bryan C. Carstens, B. Carstens, Jordan D. Satler, 2013 .

X Chromosome Inactivation and Xist Evolution in a Rodent Lacking LINE-1 Activity

B. Carstens, H. Wichman, M. Cantrell, 2009, PloS one.

Statistical hybrid detection and the inference of ancestral distribution areas in Tolpis (Asteraceae)

Bryan C. Carstens, R. Jansen, B. Carstens, 2017 .

Evaluating the adaptive evolutionary convergence of carnivorous plant taxa through functional genomics

Gregory L. Wheeler, B. Carstens, 2018, PeerJ.

Anonymous nuclear markers reveal taxonomic incongruence and long-term disjunction in a cactus species complex with continental-island distribution in South America.

B. Carstens, E. M. Moraes, Manolo F. Perez, 2016, Molecular phylogenetics and evolution.

ESTIMATING A GEOGRAPHICALLY EXPLICIT MODEL OF POPULATION DIVERGENCE

Bryan C. Carstens, B. Carstens, L. Knowles, 2007, Evolution; international journal of organic evolution.

Predictors of genomic diversity within North American squamates

E. A. Myers, B. Carstens, Lisa N. Barrow, 2022, bioRxiv.

Assessing model adequacy for Bayesian Skyline plots using posterior predictive simulation

Bryan C. Carstens, B. Carstens, M. Thomé, 2022, PloS one.

The impacts of fine-tuning, phylogenetic distance, and sample size on big-data bioacoustics

B. Carstens, Jialei Yang, Kaiya L. Provost, 2022, bioRxiv.

The Translation Initiation Factor Homolog, eif4e1c, Regulates Cardiomyocyte Metabolism and Proliferation During Heart Regeneration

B. Carstens, E. Jankowsky, K. Poss, 2022, bioRxiv.

The role of multiple Pleistocene refugia in promoting diversification in the Pacific Northwest

David C. Tank, J. Sullivan, B. Carstens, 2022, Molecular ecology.

Predictors of genomic diversity within North American squamates

E. A. Myers, Bryan C. Carstens, Edward A. Myers, 2022, bioRxiv.

Genomic evidence of an ancient inland temperate rainforest in the Pacific Northwest of North America

David C. Tank, J. Sullivan, B. Carstens, 2021, Molecular ecology.

The Carnivorous Pale Pitcher Plant Harbors Diverse, Distinct, and Time-Dependent Bacterial Communities

Danielle M. Fuselier, Bryan C. Carstens, B. Carstens, 2010, Applied and Environmental Microbiology.

Comparing range evolution in two western Plethodon salamanders: glacial refugia, competition, ecological niches, and spatial sorting

B. Carstens, Tara A. Pelletier, 2016 .

Using trace elements to identify the geographic origin of migratory bats

B. Carstens, D. Nelson, H. Gibbs, 2020, PeerJ.

Complex interplay of ancient vicariance and recent patterns of geographical speciation in north-western North American temperate rainforests explains the phylogeny of jumping slugs (Hemphillia spp.)

J. Sullivan, B. Carstens, T. Wilke, 2019, Biological Journal of the Linnean Society.

Accounting for coalescent stochasticity in testing phylogeographical hypotheses: modelling Pleistocene population structure in the Idaho giant salamander Dicamptodon aterrimus

J. Degenhardt, J. Sullivan, B. Carstens, 2004, Molecular ecology.

The Phylogeographic Shortfall in Hexapods: A Lot of Leg Work Remaining

Bryan C. Carstens, B. Carstens, Jordan D. Satler, 2021, Insect Systematics and Diversity.

Comment on “Population genetics reveal Myotis keenii (Keen’s myotis) and Myotis evotis (long-eared myotis) to be a single species”

Bryan C. Carstens, B. Carstens, N. Simmons, 2021 .

Process‐based species delimitation leads to identification of more biologically relevant species *

Bryan C. Carstens, B. Carstens, Megan L. Smith, 2019, Evolution; international journal of organic evolution.

Disentangling the process of speciation using machine learning

B. Carstens, Megan L. Smith, 2018, bioRxiv.

Delimiting species without monophyletic gene trees.

Bryan C. Carstens, B. Carstens, L. Knowles, 2007, Systematic biology.

Deep phylogeographic structure and environmental differentiation in the carnivorous plant Sarracenia alata.

B. Carstens, S. Hird, A. Zellmer, 2012, Systematic biology.

The promises and pitfalls of next-generation sequencing data in phylogeography.

A. Lemmon, B. Carstens, E. M. Lemmon, 2012, Systematic biology.

Comparative Gut Microbiota of 59 Neotropical Bird Species

Bryan C. Carstens, R. T. Brumfield, B. Carstens, 2015, Front. Microbiol..

Species Delimitation with Gene Flow

Brian C. O'Meara, Bryan C. Carstens, B. O’Meara, 2016, Systematic biology.

Phylogeographic Inference Using Approximate Likelihoods

Bryan C. Carstens, B. O’Meara, B. Carstens, 2015, bioRxiv.

Title: Phylogeographic Inference Using Approximate Likelihoods 1

Bryan C. Carstens, B. O’Meara, B. Carstens, 2015 .

Phylogeography's past, present, and future: 10 years after Avise, 2000.

Bryan C. Carstens, K. A. Crandall, K. Crandall, 2010, Molecular phylogenetics and evolution.

A global analysis of bats using automated comparative phylogeography uncovers a surprising impact of Pleistocene glaciation

Bryan C. Carstens, B. Carstens, Tara A. Pelletier, 2018, Journal of Biogeography.

Model-based analysis supports interglacial refugia over long-dispersal events in the diversification of two South American cactus species

B. Carstens, M. F. Perez, I. A. S. Bonatelli, 2016, Heredity.

Comparative phylogeography of mutualists and the effect of the host on the genetic structure of its partners

Bryan C. Carstens, N. Alvarez, B. Carstens, 2014 .

Model selection as a tool for phylogeographic inference: an example from the willow Salix melanopsis

Vivien L. Chua, David C. Tank, J. Sullivan, 2013, Molecular ecology.

Assessing model fit in phylogeographical investigations: an example from the North American sandbar willow Salix melanopsis

B. Carstens, Y. E. Tsai, 2013 .

Population genetic structure and demographic history of the lone star tick, Amblyomma americanum (Ixodida: Ixodidae): new evidence supporting old records.

B. Carstens, H. Klompen, Megan L. Smith, 2020, Molecular ecology.

A Phylogeny of the Neotropical Nectar-Feeding Bats (Chiroptera: Phyllostomidae) Based on Morphological and Molecular Data

Bryan C. Carstens, B. Lundrigan, B. Carstens, 2002, Journal of Mammalian Evolution.

Testing monophyly without well-supported gene trees: evidence from multi-locus nuclear data conflicts with existing taxonomy in the snake tribe Thamnophiini.

Bryan C. Carstens, John D. McVay, B. Carstens, 2013, Molecular phylogenetics and evolution.

Testing hypotheses of speciation timing in Dicamptodon copei and Dicamptodon aterrimus (Caudata: Dicamptodontidae).

J. Sullivan, A. Storfer, B. Carstens, 2005, Molecular phylogenetics and evolution.

Diversification of North American natricine snakes

John D. McVay, B. Carstens, O. Flores-Villela, 2015 .

Testing for the presence of cryptic diversity in tail-dropper slugs (Prophysaon) using molecular data

David C. Tank, Bryan C. Carstens, J. Sullivan, 2018, Biological Journal of the Linnean Society.

Comparative phylogeography of two Northern Rocky Mountain endemics: the widespread Anguispira kochi occidentalis and the narrow-range Anguispira nimapuna (Gastropoda: Discidae).

Bryan C. Carstens, J. Sullivan, B. Carstens, 2021, Biological journal of the Linnean Society. Linnean Society of London.

phylogatR: Phylogeographic data aggregation and repurposing

Bryan C. Carstens, B. Carstens, Tara A. Pelletier, 2021, bioRxiv.

Multilocus species delimitation in a complex of morphologically conserved trapdoor spiders (mygalomorphae, antrodiaetidae, aliatypus).

B. Carstens, Jordan D. Satler, M. Hedin, 2013, Systematic biology.

Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

B. Carstens, N. Reid, 2012, BMC Evolutionary Biology.

Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater)

R. T. Brumfield, B. Carstens, S. Hird, 2014, PeerJ.

Genomic Resources for the North American Water Vole (Microtus richardsoni) and the Montane Vole (Microtus montanus)

J. Sullivan, B. Carstens, Drew J. Duckett, 2021, bioRxiv.

Climate refugia: joint inference from fossil records, species distribution models and phylogeography.

Paul D. Henne, Bryan C. Carstens, Alycia L. Stigall, 2014, The New phytologist.

PHRAPL: Phylogeographic Inference Using Approximate Likelihoods

Brian C. O'Meara, Bryan C. Carstens, B. O’Meara, 2017, Systematic biology.

Identifying cryptic diversity with predictive phylogeography

David C. Tank, J. Sullivan, B. Carstens, 2016, Proceedings of the Royal Society B: Biological Sciences.

Comparative and predictive phylogeography in the South American diagonal of open formations: Unravelling the biological and environmental influences on multitaxon demography

Bryan C. Carstens, Marcelo Gehara, B. Carstens, 2021, Molecular ecology.

Phylogeographic model selection using convolutional neural networks

Emanuel Masiero da Fonseca, Guarino R. Colli, Fernanda P. Werneck, 2020, bioRxiv.

Title: Phylogeographic Inference Using Approximate Likelihoods 1 Running Title: Phylogeography with Approximate Likelihoods

Bryan C. Carstens, B. O’Meara, B. Carstens, 2015 .

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

Laura Salter Kubatko, L. Lacey Knowles, Bryan C. Carstens, 2009, Bioinform..

Testing nested phylogenetic and phylogeographic hypotheses in the Plethodon vandykei species group.

Jeremiah D. Degenhardt, Bryan C. Carstens, J. Sullivan, 2004, Systematic biology.

Using Next Generation RAD Sequencing to Isolate Multispecies Microsatellites for Pilosocereus (Cactaceae)

B. Carstens, I. A. S. Bonatelli, E. M. Moraes, 2015, PloS one.

Conservation genetic inferences in the carnivorous pitcher plant Sarracenia alata (Sarraceniaceae)

Bryan C. Carstens, B. Carstens, Margaret M. Koopman, 2010, Conservation Genetics.

Shifting distributions and speciation: species divergence during rapid climate change

Bryan C. Carstens, B. Carstens, L. Knowles, 2006, Molecular ecology.

A role of asynchrony of seasons in explaining genetic differentiation in a Neotropical toad

Bryan C. Carstens, C. Haddad, B. Carstens, 2021, Heredity.

Genetic diversity of North American vertebrates in protected areas

Bryan C. Carstens, B. Carstens, Tara A. Pelletier, 2020, Biological Journal of the Linnean Society.

Does habitat stability structure intraspecific genetic diversity? It’s complicated...

Bryan C. Carstens, Heather E. Glon, B. Carstens, 2020, Frontiers of Biogeography.

Geographical range size and latitude predict population genetic structure in a global survey

B. Carstens, Tara A. Pelletier, 2018, Biology Letters.

Coupling Genetic and Ecological-Niche Models to Examine How Past Population Distributions Contribute to Divergence

Bryan C. Carstens, B. Carstens, L. Knowles, 2007, Current Biology.

Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.

Bryan C. Carstens, B. Carstens, L. Kubatko, 2010, Molecular phylogenetics and evolution.

Do ecological communities disperse across biogeographic barriers as a unit?

Bryan C. Carstens, B. Carstens, Jordan D. Satler, 2017, Molecular ecology.

Biogeographic barriers drive co-diversification within associated eukaryotes of the Sarracenia alata pitcher plant system

Bryan C. Carstens, B. Carstens, Jordan D. Satler, 2016, PeerJ.

From inland to the coast: Spatial and environmental signatures on the genetic diversity in the colonization of the South Atlantic Coastal Plain

B. Carstens, S. Bonatto, L. Freitas, 2017 .

Predicting migration routes for three species of migratory bats using species distribution models

B. Carstens, H. Gibbs, J. Wieringa, 2021, PeerJ.

The Microbial Phyllogeography of the Carnivorous Plant Sarracenia alata

Bryan C. Carstens, B. Carstens, Margaret M. Koopman, 2011, Microbial Ecology.

Genomic evidence of an ancient inland temperate rainforest in the Pacific Northwest of North America

David C. Tank, J. Sullivan, B. Carstens, 2022, Molecular ecology.

Exploring population genetic structure in three species of Lesser Antillean bats

J. Sullivan, B. Carstens, L. Dávalos, 2004, Molecular ecology.

The translation initiation factor homolog eif4e1c regulates cardiomyocyte metabolism and proliferation during heart regeneration

B. Carstens, E. Jankowsky, K. Poss, 2023, bioRxiv.

Phylogeography and Genetic Structure of Three Evolutionary Lineages of West Indian Phyllostomid Bats

B. Carstens, T. Fleming, K. Murray, 2010 .

PRGmatic: an efficient pipeline for collating genome‐enriched second‐generation sequencing data using a ‘provisional‐reference genome’

R. T. Brumfield, B. Carstens, S. Hird, 2011, Molecular ecology resources.

Predicting plant conservation priorities on a global scale

Jack Sullivan, David C. Tank, Bryan C. Carstens, 2018, Proceedings of the National Academy of Sciences.

P2C2M.GMYC: An R package for assessing the utility of the Generalized Mixed Yule Coalescent model

Bryan C. Carstens, B. Carstens, Drew J. Duckett, 2020, Methods in Ecology and Evolution.

Genetic diversity in migratory bats: Results from RADseq data for three tree bat species at an Ohio windfarm

B. Carstens, H. Gibbs, M. Sovic, 2016, PeerJ.

The evolution of phylogeographic data sets

B. Carstens, Tara A. Pelletier, Jordan D. Satler, 2015, Molecular ecology.

Historical Species Distribution Models Predict Species Limits in Western Plethodon Salamanders.

Bryan C. Carstens, Tara A Pelletier, Bryan C Carstens, 2015, Systematic biology.

Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

Bryan C. Carstens, B. Carstens, N. Reid, 2012, BMC Evolutionary Biology.

Analysis of biodiversity data suggests that mammal species are hidden in predictable places

Bryan C. Carstens, B. Carstens, Tara A. Pelletier, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Combining allele frequency and tree‐based approaches improves phylogeographic inference from natural history collections

David C. Tank, Bryan C. Carstens, J. Sullivan, 2018, Molecular ecology.

Recurrent connections between Amazon and Atlantic forests shaped diversity in Caatinga four‐eyed frogs

Bryan C. Carstens, B. Carstens, F. Sequeira, 2016 .

Identifying model violations under the multispecies coalescent model using P2C2M.SNAPP

Bryan C. Carstens, Drew J Duckett, Tara A Pelletier, 2020, PeerJ.

Species Concepts in Biology: Historical Development, Theoretical Foundations and Practical Relevance. By Frank E. Zachos. Cham (Switzerland): Springer. $159.00. xii + 220 p.; ill.; index. ISBN: 978-3-319-44964-7 (hc); 978-3-319-44966-1 (eb). 2016.

B. Carstens, 2018 .

Variable nuclear markers for Melanoplus oregonensis identified from the screening of a genomic library

B. Carstens, L. Knowles, 2006 .

Machine learning reveals relationships between song, climate, and migration in coastal Zonotrichia leucophrys

B. Carstens, Jialei Yang, Kaiya L. Provost, 2023, bioRxiv.

Dialect differences correlate with environment in migratory coastal White-crowned

B. Carstens, Jialei Yang, Kaiya L. Provost, 2023 .

Evidence that Myotis lucifugus “Subspecies” are Five Nonsister Species, Despite Gene Flow

B. Carstens, Ariadna E. Morales, 2018, Systematic biology.

Genomic data from the Brazilian sibilator frog reveal contrasting pleistocene dynamics and regionalism in two South American dry biomes

Bryan C. Carstens, C. Haddad, B. Carstens, 2021, Journal of Biogeography.

Insights into the Biogeography of the Pacific Northwest of North America: Evidence from the Phylogeography of Salix Melanopsis

B. Carstens, S. Brunsfeld, T. R. Miller, 2007 .

Supplemental Figure Legends

B. Carstens, Jordan D. Satler, M. Hedin, 2015 .

Geographic isolation and long-distance gene flow influence the genetic structure of the blue fan palm Brahea armata (Arecaceae)

B. Carstens, F. Molina-Freaner, C. Domínguez, 2023, Journal of Plant Research.

Demographic model selection using random forests and the site frequency spectrum

Jack Sullivan, David C. Tank, Bryan C. Carstens, 2017, Molecular ecology.

Integrating life history traits into predictive phylogeography

David C. Tank, Bryan C. Carstens, J. Sullivan, 2019, Molecular ecology.

Running Head : Trait data in predictive phylogeography

Bryan C. Carstens, J. Sullivan, B. Carstens, 2019 .

Giant tree frogs exemplify the promise of integrating multiple types of data in phylogeographic investigations

B. Carstens, Shelby P Moshier, 2022, Molecular Ecology.

Pleistocene glaciations caused the latitudinal gradient of within-species genetic diversity

Bryan C. Carstens, B. Carstens, Tara A. Pelletier, 2023, Evolution letters.

Phylogeny of Leafhopper Subgenus Errhomus (Erronus) (Hemiptera: Cicadellidae) Based on Mitochondrial DNA Sequences

Bryan C. Carstens, B. Carstens, W. S. Sheppard, 2005 .

Comparative Phylogeography of Microsnails from the Pacific Northwest

J. Sullivan, B. Carstens, A. Espíndola, 2023, Northwest science.

Rapid evolutionary turnover underlies conserved lncRNA–genome interactions

Howard Y. Chang, Jeffrey J. Quinn, Q. Zhang, 2016, Genes & development.

Supplemental Figure Legends

Bryan C. Carstens, B. Carstens, Jordan D. Satler, 2015 .

Supplemental Figure Legends

B. Carstens, Jordan D. Satler, Marshal Hedin, 2015 .

Supplemental Figure Legends

B. Carstens, Jordan D. Satler, David G. Drubin, 2015 .

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

Bryan C. Carstens, B. Carstens, L. Kubatko, 2009, Bioinform..