J. Berges

发表

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

Leszek Rychlewski, Yves Van de Peer, Jean-Paul Cadoret, 2008, Nature.

Integrated photo-bioelectrochemical system for contaminants removal and bioenergy production.

Zhen He, Zhen He, J. Berges, 2012, Environmental science & technology.

The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

Nicholas H. Putnam, M. Brzezinski, D. Schwartz, 2004, Science.

New types of metacaspases in phytoplankton reveal diverse origins of cell death proteases

J. Berges, C. J. Choi, C. J. Choi, 2013, Cell Death and Disease.

Estimating carbon, nitrogen, protein, and chlorophyll a from volume in marine phytoplankton

Paul J. Harrison, John A. Berges, P. Harrison, 1994 .

Problems and pitfalls in using HPLC pigment analysis to distinguish Lake Michigan phytoplankton taxa

J. Berges, C. D. Sandgren, L. J. Simmons, 2016 .

Seasonal variations in nitrate reductase activity and internal N pools in intertidal brown algae are correlated with ambient nitrate concentrations.

J. Berges, E. Young, M. Dring, 2007, Plant, cell & environment.

Rapid effects of diverse toxic water pollutants on chlorophyll a fluorescence: variable responses among freshwater microalgae.

J. Berges, Chang Jae Choi, E. Young, 2012, Water research.

Identification of senescence and death in Emiliania huxleyi and Thalassiosira pseudonana: Cell staining, chlorophyll alterations, and dimethylsulfoniopropionate (DMSP) metabolism

D. J. Franklin, J. Berges, G. Malin, 2012 .

Localization and seasonal variation of blue pigment (sandercyanin) in walleye (Sander vitreus)

T. Ehlinger, J. Berges, V. Blazer, 2015 .

Effect of dead phytoplankton cells on the apparent efficiency of photosystem II

D. J. Franklin, Claire Hughes, J. Berges, 2009 .

INHIBITION OF CASPASE‐LIKE ACTIVITIES PREVENTS THE APPEARANCE OF REACTIVE OXYGEN SPECIES AND DARK‐INDUCED APOPTOSIS IN THE UNICELLULAR CHLOROPHYTE DUNALIELLA TERTIOLECTA 1

J. Berges, M. Segovia, 2009, Journal of phycology.

Effect of inhibitors of protein synthesis and DNA replication on the induction of proteolytic activities, caspase-like activities and cell death in the unicellular chlorophyte Dunaliella tertiolecta

J. Berges, M. Segovia, 2005 .

Physiological stress and cell death in marine phytoplankton: Induction of proteases in response to nitrogen or light limitation

P. Falkowski, J. Berges, 1998 .

Algal-microbial community collaboration for energy recovery and nutrient remediation from wastewater in integrated photobioelectrochemical systems

Shuai Luo, J. Berges, Zhen He, 2017 .

Differential Effects of Nitrogen Limitation on Photosynthetic Efficiency of Photosystems I and II in Microalgae

P. Falkowski, J. Berges, D. Mauzerall, 1996, Plant physiology.

DOES LIGHT QUALITY AFFECT THE SINKING RATES OF MARINE DIATOMS? 1

P. Harrison, J. Berges, A. Fisher, 1996 .

A comparison of Lowry, Bradford and Smith protein assays using different protein standards and protein isolated from the marine diatom Thalassiosira pseudonana

P. Harrison, J. Berges, A. Fisher, 1993 .

Marine Culture Media

P. Harrison, J. Berges, 2005 .

Using Wikipedia Assignments to Teach Critical Thinking and Scientific Writing in STEM Courses

Erin I. Larson, M. Vanni, M. Ardón, 2022, Frontiers in Education.

Nitrate Reductase: A Nexus of Disciplines, Organisms, and Metabolism

J. Berges, E. Young, 2016 .

Use of Agent-Based Modeling To Explore the Mechanisms of Intracellular Phosphorus Heterogeneity in Cultured Phytoplankton

Neil D. Fredrick, F. Hellweger, J. Berges, 2013, Applied and Environmental Microbiology.

Phytoplankton Phosphorus Heterogeneity in Cultured the Mechanisms of Intracellular Use of Agent-Based Modeling To Explore

Neil D. Fredrick, J. Berges, B. Twining, 2013 .

Use of the multispecies freshwater biomonitor to assess behavioral changes of Corophium volutator (Pallas, 1766) (Crustacea, Amphipoda) in response to toxicant exposure in sediment.

J. Berges, J. Dick, A. Gerhardt, 2006, Ecotoxicology and environmental safety.

In vitro iron enrichment experiments at iron-rich and -poor sites in the NE subarctic Pacific

P. Boyd, P. Harrison, J. Berges, 1998 .

Effects of aquarium-related stressors on the zebrafish: a comparison of behavioral, physiological, and biochemical indicators.

J. Berges, D. Gronquist, 2013, Journal of aquatic animal health.

Size-fractionated sedimentation in a tropical neritic ecosystem near Kingston, Jamaica

J. Berges, R. Hopcroft, J. Roff, 1990 .

Recipes for Freshwater and Seawater Media

P. Harrison, J. Berges, R. Andersen, 2005 .

Identification of factors constraining nitrate assimilation in Lake Superior, Laurentian Great Lakes

R. McKay, G. Bullerjahn, J. Berges, 2013, Hydrobiologia.

Nitrate reductase activity in macroalgae and its vertical distribution in macroalgal epiphytes of seagrasses

P. Lavery, J. Berges, E. Young, 2005 .

DIEL PERIODICITY OF NITRATE REDUCTASE ACTIVITY AND PROTEIN LEVELS IN THE MARINE DIATOM THALASSIOSIRA WEISSFLOGII (BACILLARIOPHYCEAE)

P. Falkowski, J. J. Vergara, J. Berges, 1998 .

Nitrate reductase activity quantitatively predicts the rate of nitrate incorporation under steady state light limitation: A revised assay and characterization of the enzyme in three species of marine phytoplankton

P. Harrison, J. Berges, 1995 .

Cell death in individual freshwater phytoplankton species: relationships with population dynamics and environmental factors

J. Berges, C. D. Sandgren, E. Young, 2019, European Journal of Phycology.

Growth parameters and responses of green algae across a gradient of phototrophic, mixotrophic and heterotrophic conditions

J. Berges, E. Young, Lindsay Reed, 2022, PeerJ.

NITROGEN METABOLISM IN PHYTOPLANKTON

J. Berges, Y. Collos, 2011 .

Encyclopedia of Life Support Systems ( EOLSS ) NITROGEN METABOLISM IN PHYTOPLANKTON

J. Berges, Y. Collos, 2011 .

Analysis of the soluble matrix of vaterite otoliths of juvenile herring (Clupea harengus): do crystalline otoliths have less protein?

J. Berges, A. Geffen, J. Tomás, 2004, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.

Characterization of proteolytic enzyme activities in macroalgae

J. L. Pérez-Lloréns, J. J. Vergara, J. Berges, 2003 .

CELL‐ASSOCIATED PROTEOLYTIC ENZYMES FROM MARINE PHYTOPLANKTON 1

P. Falkowski, J. Berges, 1996 .

Physiological responses of intertidal marine brown algae to nitrogen deprivation and resupply of nitrate and ammonium.

J. Berges, E. Young, M. Dring, 2009, Physiologia plantarum.

Distinct patterns of nitrate reductase activity in brown algae: light and ammonium sensitivity in Laminaria digitata is absent in Fucus species 1

J. Berges, E. Young, M. Dring, 2007 .

Laboratory and field responses of algal nitrate reductase to diel periodicity in irradiance, nitrate exhaustion, and the presence of ammonium

P. Harrison, J. Berges, W. Cochlan, 1995 .

RELATIONSHIPS BETWEEN NITRATE REDUCTASE ACTIVITY AND RATES OF GROWTH AND NITRATE INCORPORATION UNDER STEADY‐STATE LIGHT OR NITRATE LIMITATION IN THE MARINE DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE) 1

P. Harrison, J. Berges, John A. Berges, 1995 .

Miniview: algal nitrate reductases

J. Berges, 1997 .

The ongoing need for rates: can physiology and omics come together to co-design the measurements needed to understand complex ocean biogeochemistry?

B. Nunn, P. Boyd, R. Strzepek, 2021, Journal of plankton research.

Environmental tolerances of free-living coralline algae (maerl): implications for European marine conservation

J. Berges, C. Maggs, Siân Wilson, 2004 .

Enzymes as indices of growth rate and nitrate metabolism in marine phytoplankton

J. Berges, 1993 .

Algal Culturing Techniques

P. Harrison, J. Berges, 2005 .

Fitting ecological and physiological data to rectangular hyperbolae: a comparison of methods using Monte Carlo simulations

C. Hurd, P. Harrison, J. Berges, 1994 .

Determining Parameters of the Numerical Response

J. Berges, D. Montagnes, 2004, Microbial Ecology.

3-hydroxy-3-methylglutaryl coenzyme a lyase from tissues of the oyster, Crassostrea virginica, the little skate, Raja erinacea and the lake charr, Salvelinus namaycush: A simplified spectrophotometric assay

J. Berges, J. Ballantyne, 1989 .

Ferdi L. Hellweger, Neil D. Fredrick, John A. Berges, 2014, BMC Systems Biology.

EVOLUTION OF AN ARTIFICIAL SEAWATER MEDIUM: IMPROVEMENTS IN ENRICHED SEAWATER, ARTIFICIAL WATER OVER THE LAST TWO DECADES

D. J. Franklin, P. Harrison, J. Berges, 2001 .

Enzymes and Nitrogen Cycling

J. Berges, M. Mulholland, 2008 .

c0032 Enzymes and N Cycling

J. Berges, M. Mulholland, 2008 .

Enzymes and N Cycling

J. Berges, M. Mulholland, 2008 .

Growth inhibition of cultured marine phytoplankton by toxic algal-derived polyunsaturated aldehydes.

R. Casotti, J. Berges, F. Ribalet, 2007, Aquatic toxicology.

Enzyme Activities of Gill, Hepatopancreas, Mantle, and Adductor Muscle of the Oyster (Crassostrea virginica) after Changes in Diet and Salinity

J. Berges, J. Ballantyne, 1991 .

The Phaeodactylum genome reveals the dynamic nature and multi-lineage evolutionary history of diatom genomes

Armbrust, A. Kaplan, J. Weissenbach, 2011 .

Classification and Nomenclature of Metacaspases and Paracaspases: No More Confusion with Caspases.

T. Nyström, E. Koonin, Yigong Shi, 2020, Molecular cell.

Sediment distribution, hydrolytic enzyme profiles and bacterial activities in the guts of Oneirophanta mutabilis, Psychropotes longicauda and Pseudostichopus villosus: what do they tell us about digestive strategies of abyssal holothurians?

J. Berges, J. Patching, H. Moore, 2001 .

Ratios, regression statistics, and “spurious” correlations

John A. Berges, J. Berges, 1997 .

From genes to ecosystems: using molecular information from diatoms to understand ecological processes

J. Berges, E. Young, K. Thamatrakoln, 2022, Advances in Phytoplankton Ecology.

Phytoplankton Cell Lysis Associated with Polyunsaturated Aldehyde Release in the Northern Adriatic Sea

M. Bastianini, Thomas Wichard, G. Pohnert, 2014, PloS one.

IDENTIFICATION AND COMPARATIVE GENOMIC ANALYSIS OF SIGNALING AND REGULATORY COMPONENTS IN THE DIATOM THALASSIOSIRA PSEUDONANA 1

A. Falciatore, D. Rokhsar, G. Pazour, 2007 .

Immunochemical methods for identification of prey in freshwater zooplankton

J. Berges, C. D. Sandgren, W. Currie, 2020, Limnology and Oceanography: Methods.

Pressure from top and bottom: Lower food web responses to changes in nutrient cycling and invasive species in western Lake Michigan

J. Berges, C. D. Sandgren, E. Young, 2015 .

Relationship Between Body Size, Growth Rate, and Maximal Enzyme Activities in the Brine Shrimp, Artemia franciscana.

J. Berges, J. Roff, J. Ballantyne, 1990, The Biological bulletin.

AN IN VITRO NITRATE REDUCTASE ASSAY FOR MARINE MACROALGAE: OPTIMIZATION AND CHARACTERIZATION OF THE ENZYME FOR FUCUS GARDNERI (PHAEOPHYTA) 1

C. Hurd, P. Harrison, J. Berges, 1995 .

What is the role and nature of programmed cell death in phytoplankton ecology?

John A. Berges, Daniel J. Franklin, D. J. Franklin, 2006 .

Virus morphological diversity and relationship to bacteria and chlorophyll across a freshwater trophic gradient in the Lake Michigan watershed

Alicia M. Hanson, J. Berges, E. Young, 2017, Hydrobiologia.

Cell Death in the Unicellular Chlorophyte Dunaliella tertiolecta. A Hypothesis on the Evolution of Apoptosis in Higher Plants and Metazoans

P. Falkowski, J. Berges, L. Haramaty, 2003, Plant Physiology.

Cell death and degeneration in the symbiotic dinoflagellates of the coral Stylophora pistillata during bleaching

D. J. Franklin, O. Hoegh‐Guldberg, J. Berges, 2004 .

RELATIONSHIP BETWEEN NUCLEOSIDE DIPHOSPHATE KINASE ACTIVITY AND LIGHT‐LIMITED GROWTH RATE IN THE MARINE DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE) 1

P. Harrison, J. Berges, John A. Berges, 1993 .

Transformations of biogenic particulates from the pelagic to the deep ocean realm

S. Giovannoni, M. Charette, S. B. Moran, 1999 .

Identification of senescence and death in Emiliania huxleyi andThalassiosira pseudonana: Cell staining,

D. J. Franklin, J. Berges, G. Malin, 2012 .

Effects of temperature on growth rate, cell composition and nitrogen metabolism in the marine diatom Thalassiosira pseudonana (Bacillariophyceae)

Paul J. Harrison, John A. Berges, P. Harrison, 2002 .

Cell death in algae: physiological processes and relationships with stress

J. Berges, Chang Jae Choi, 2014 .

Dynamics of a virus-host model with an intrinsic quota

John A. Berges, K. M. Fuhrman, G. A. Pinter, 2011, Math. Comput. Model..

Enzymatic indices of respiration and ammonia excretion: relationships to body size and food levels

J. Berges, J. Roff, J. Ballantyne, 1993 .

Mathematical modeling of bacteria–virus interactions in Lake Michigan incorporating phosphorus content

Maxx H. Tessmer, J. Berges, E. Young, 2013 .

Effects of silicate resupply to silicate‐deprived Thalassiosira weissflogii (Bacillariophyceae) in stationary or senescent phase: short‐term patterns of growth and cell death

P. Harrison, J. Berges, Yuelu Jiang, 2014, Journal of phycology.

Mortality in cultures of the dinoflagellate Amphidinium carterae during culture senescence and darkness

D. J. Franklin, J. Berges, 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.

Use of Agent-Based Modeling To Explore the Mechanisms of Intracellular Phosphorus Heterogeneity in Cultured Phytoplankton

Neil D. Fredrick, F. Hellweger, J. Berges, 2013, Applied and Environmental Microbiology.