Takashi Yoshida

发表

Rachelle M. Jensen, G. Cochrane, A. Wichels, 2015, GigaScience.

Tight association between microbial eukaryote and giant virus communities in the Arctic Ocean

H. Ogata, S. Kameyama, Takashi Yoshida, 2022, Limnology and Oceanography.

Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake

H. Ogata, Takashi Yoshida, Y. Okazaki, 2019, bioRxiv.

Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake.

H. Ogata, Takashi Yoshida, Y. Okazaki, 2019, Environmental microbiology.

Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake

H. Ogata, Takashi Yoshida, Y. Okazaki, 2019 .

Minimum Information about an Uncultivated Virus Genome (MIUViG)

Natalia N. Ivanova, Evelien M. Adriaenssens, G. Cochrane, 2018, Nature Biotechnology.

Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean

Susumu Goto, Pascal Hingamp, Hiroyuki Ogata, 2017, mSphere.

In silico Prediction of Virus-Host Interactions for Marine Bacteroidetes With the Use of Metagenome-Assembled Genomes

H. Ogata, Takashi Yoshida, D. Morimoto, 2020, Frontiers in Microbiology.

Dynamics of microcystin-producing and non-microcystin-producing Microcystis populations is correlated with nitrate concentration in a Japanese lake.

Takashi Yoshida, Mitsuhiro Yoshida, Y. Takashima, 2007, FEMS microbiology letters.

Genetic diversity of the toxic cyanobacterium Microcystis in Lake Mikata

Takashi Yoshida, Mitsuhiro Yoshida, R. Kondo, 2005, Environmental toxicology.

Quantitative Detection of Toxic Strains of the Cyanobacterial Genus Microcystis by Competitive PCR

Takashi Yoshida, S. Lei, Mitsuhiro Yoshida, 2003 .

Cooccurrence of Broad- and Narrow-Host-Range Viruses Infecting the Bloom-Forming Toxic Cyanobacterium Microcystis aeruginosa

Y. Sako, Takashi Yoshida, D. Morimoto, 2019, Applied and Environmental Microbiology.

Diel cycling of the cosmopolitan abundant Pelagibacter virus 37-F6: one of the most abundant viruses in Earth.

E. Delong, H. Ogata, M. Martínez-García, 2020, Environmental microbiology reports.

Carboxydothermus pertinax sp. nov., a thermophilic, hydrogenogenic, Fe(III)-reducing, sulfur-reducing carboxydotrophic bacterium from an acidic hot spring.

Y. Sako, Takashi Yoshida, K. Takabe, 2012, International journal of systematic and evolutionary microbiology.

Coordination of DNA replication and cell division in cyanobacteria Microcystis aeruginosa.

Takashi Yoshida, Hideaki Okamoto, S. Hiroishi, 2005, FEMS microbiology letters.

Isolation of a bacterium possessing a haloacid dehalogenase from a marine sediment core.

Y. Sako, Takashi Yoshida, H. Nishimura, 2009, Microbes and environments.

Variation of the Virus-Related Elements within Syntenic Genomes of the Hyperthermophilic Archaeon Aeropyrum

Y. Sako, Takashi Yoshida, Takahiro Inoue, 2013, Applied and Environmental Microbiology.

The first assessment of cyanobacterial and diazotrophic diversities in the Japan Sea

Y. Sako, Takashi Yoshida, T. Nishikawa, 2012, Fisheries Science.

Viruses of freshwater bloom-forming cyanobacteria: Genomic features, infection strategies and coexistence with the host.

Takashi Yoshida, D. Morimoto, S. Šulčius, 2020, Environmental microbiology reports.

Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan

Takashi Yoshida, H. Kumagai, K. Oishi, 2022, Microbes and environments.

Title Diurnal infection patterns and impact of Microcystiscyanophages in a Japanese pond

Y. Sako, Takashi Yoshida, T. Honda, 2016 .

Diurnal Infection Patterns and Impact of Microcystis Cyanophages in a Japanese Pond

Y. Sako, Takashi Yoshida, T. Honda, 2012, Applied and Environmental Microbiology.

Genetic diversity of Microcystis cyanophages in two different freshwater environments

Y. Sako, Takashi Yoshida, G. Nakamura, 2014, Archives of Microbiology.

LexA Binds to Transcription Regulatory Site of Cell Division Gene ftsZ in Toxic Cyanobacterium Microcystis aeruginosa

Y. Sako, Takashi Yoshida, D. Morimoto, 2018, Marine Biotechnology.

Over-expression of carbon monoxide dehydrogenase-I with an accessory protein co-expression: a key enzyme for carbon dioxide reduction

Y. Sako, Takashi Yoshida, Takahiro Inoue, 2014, Bioscience, biotechnology, and biochemistry.

Title The Distribution of a Phage-Related Insertion Sequence Element in the Cyanobacterium, Microcystis aeruginosa

Y. Sako, Takashi Yoshida, N. Hosoda, 2018 .

The distribution of a phage-related insertion sequence element in the cyanobacterium, Microcystis aeruginosa.

Y. Sako, Takashi Yoshida, N. Hosoda, 2010, Microbes and environments.

Diversity of viruses of the hyperthermophilic archaeal genus Aeropyrum, and isolation of the Aeropyrum pernix bacilliform virus 1, APBV1, the first representative of the family Clavaviridae.

P. Forterre, Y. Sako, D. Prangishvili, 2010, Virology.

The functional effect of Gly209 and Ile213 substitutions on lysozyme activity of family 19 chitinase encoded by cyanophage Ma-LMM01

Y. Sako, Takashi Yoshida, K. Nagasaki, 2011, Fisheries Science.

Draft Genome Sequence of Thermanaeromonas sp. Strain C210, Isolated in the Presence of Carbon Monoxide

Y. Sako, Takashi Yoshida, A. Tanimura, 2020, Microbiology Resource Announcements.

Draft Genome Sequence of the Astaxanthin-Producing Microalga Haematococcus lacustris Strain NIES-144

Takashi Yoshida, S. Sawayama, D. Morimoto, 2020, Microbiology Resource Announcements.

Co-occurrence of broad and narrow host-range viruses infecting the toxic bloom-forming cyanobacterium Microcystis aeruginosa

Y. Sako, Takashi Yoshida, D. Morimoto, 2019 .

Diversity analysis of thermophilic hydrogenogenic carboxydotrophs by carbon monoxide dehydrogenase amplicon sequencing using new primers

Y. Sako, Takashi Yoshida, Kimiho Omae, 2021, Extremophiles.

Diversification of CRISPR within coexisting genotypes in a natural population of the bloom-forming cyanobacterium Microcystis aeruginosa.

Y. Sako, Takashi Yoshida, Sotaro Kuno, 2014, Microbiology.

Spatial and temporal variability of unicellular diazotrophic cyanobacteria in the eastern Seto Inland Sea

Y. Sako, Takashi Yoshida, H. Watai, 2016, Fisheries Science.

Diversity and distribution of thermophilic hydrogenogenic carboxydotrophs revealed by microbial community analysis in sediments from multiple hydrothermal environments in Japan

Y. Sako, Takashi Yoshida, Kimiho Omae, 2019, Archives of Microbiology.

Ecological Dynamics of the Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa and Its Cyanophages in Freshwater

Takashi Yoshida, K. Nagasaki, Mitsuhiro Yoshida, 2008, Applied and Environmental Microbiology.

ViPTree: the viral proteomic tree server

Takashi Yoshida, Hiroyuki Ogata, Yosuke Nishimura, 2017, Bioinform..

Calcium salts of long-chain fatty acids from linseed oil decrease methane production by altering the rumen microbiome in vitro

Takashi Yoshida, H. Kumagai, K. Oishi, 2020, PloS one.

Differential Responses of a Coastal Prokaryotic Community to Phytoplanktonic Organic Matter Derived from Cellular Components and Exudates

Takashi Yoshida, Keigo Yamamoto, Kento Tominaga, 2020, Microbes and environments.

High toxicity of the novel bloom-forming species Chattonella ovata (Raphidophyceae) to cultured fish

Takashi Yoshida, I. Imai, S. Hiroishi, 2005 .

Sequence Analysis of 5.8S rDNA and the Internal Transcribed Spacer Region in Dinoflagellate Heterocapsa Species (Dinophyceae) and Development of Selective PCR Primers for the Bivalve Killer Heterocapsa circularisquama

Takashi Yoshida, M. Iwataki, S. Hiroishi, 2003 .

Viral Nature of the Aquatic Ecosystems

Takashi Yoshida, D. Morimoto, Kento Tominaga, 2022, The Biological Role of a Virus.

Bacteria–Virus Interactions

Takashi Yoshida, D. Morimoto, Shigeko Kimura, 2019, DNA Traffic in the Environment.

Incomplete Selective Sweeps of Microcystis Population Detected by the Leader-End CRISPR Fragment Analysis in a Natural Pond

Y. Sako, Takashi Yoshida, D. Morimoto, 2018, Front. Microbiol..

Genome variation in the hyperthermophilic archaeon Aeropyrum

Y. Sako, Takashi Yoshida, Takashi Daifuku, 2013, Mobile genetic elements.

PURIFICATION AND CHARACTERIZATION OF A SULFOTRANSFERASE SPECIFIC TO N‐21 OF SAXITOXIN AND GONYAUTOXIN 2+3 FROM THE TOXIC DINOFLAGELLATE GYMNODINIUM CATENATUM (DINOPHYCEAE)

Y. Sako, A. Uchida, Y. Ishida, 2001 .

Purification and characterization of sulfotransferase specific to O-22 of 11-hydroxy saxitoxin from the toxic dinoflagellate Gymnodinium catenatum (dinophyceae)

Y. Sako, A. Uchida, Y. Ishida, 2002 .

Cyanophage Infection in the Bloom-Forming Cyanobacteria Microcystis aeruginosa in Surface Freshwater

H. Ogata, Takashi Yoshida, K. Nagasaki, 2012, Microbes and environments.

Ma-LMM01 Infecting Toxic Microcystis aeruginosa Illuminates Diverse Cyanophage Genome Strategies

Hiroyuki Ogata, Shigetaka Sakamoto, H. Ogata, 2007, Journal of bacteriology.

Geographic differences in paralytic shellfish poisoning toxin profiles among Japanese populations of Alexandrium tamarense and A. catenella (Dinophyceae)

Y. Sako, A. Uchida, Takashi Yoshida, 2001 .

Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters

H. Ogata, P. Hingamp, Takashi Yoshida, 2018, Viruses.

A thermophilic, hydrogenogenic and carboxydotrophic bacterium, Calderihabitans maritimus gen. nov., sp. nov., from a marine sediment core of an undersea caldera.

Y. Sako, Takashi Yoshida, C. Imada, 2013, International journal of systematic and evolutionary microbiology.

Year-round dynamics of amplicon sequence variant communities differ among eukaryotes, Mimiviridae, and prokaryotes in a coastal ecosystem

H. Ogata, Romain Blanc-Mathieu, Takashi Yoshida, 2021, bioRxiv.

An Optimized Metabarcoding Method for Mimiviridae

Tetsuya Hayashi, H. Ogata, Romain Blanc-Mathieu, 2020, Microorganisms.

The Earth Is Small for “Leviathans”: Long Distance Dispersal of Giant Viruses across Aquatic Environments

H. Ogata, Romain Blanc-Mathieu, Takashi Yoshida, 2019, Microbes and environments.

Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis

H. Ogata, Takashi Yoshida, Y. Nishimura, 2021, bioRxiv.

Predetermined clockwork microbial worlds: Current understanding of aquatic microbial diel response from model systems to complex environments.

Takashi Yoshida, D. Morimoto, Kento Tominaga, 2020, Advances in applied microbiology.

Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan

H. Ogata, S. Goto, P. Hingamp, 2018, The ISME Journal.

Diversity analysis of thermophilic hydrogenogenic carboxydotrophs by carbon monoxide dehydrogenase amplicon sequencing using new primers

Y. Sako, Takashi Yoshida, Kimiho Omae, 2021, Extremophiles : life under extreme conditions.

Anaerobic and hydrogenogenic carbon monoxide-oxidizing prokaryotes: Versatile microbial conversion of a toxic gas into an available energy.

Y. Sako, Takashi Yoshida, Kimiho Omae, 2020, Advances in applied microbiology.

Isolation and genomic and physiological characterization of Parageobacillus sp. G301, the isolate capable of both hydrogenogenic and aerobic carbon monoxide oxidation

Y. Sako, Takashi Yoshida, M. Inoue, 2023, bioRxiv.

Biome-specific distribution of Ni-containing carbon monoxide dehydrogenases

Y. Sako, Takashi Yoshida, Kimiho Omae, 2022, Extremophiles : life under extreme conditions.

Identification of key virus–prokaryote infection pairs that contribute to viral shunt in a freshwater lake

Takashi Yoshida, Y. Shimizu, T. Matsuda, 2023, bioRxiv.

Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan

H. Ogata, S. Goto, P. Hingamp, 2018, The ISME Journal.

Tight association between microbial eukaryote and Imitervirales communities in the Pacific Arctic Ocean

H. Ogata, S. Kameyama, Takashi Yoshida, 2021, bioRxiv.

Insight into Energy Conservation via Alternative Carbon Monoxide Metabolism in Carboxydothermus pertinax Revealed by Comparative Genome Analysis

Y. Sako, Takashi Yoshida, Y. Yoneda, 2018, Applied and Environmental Microbiology.

Anodic and Cathodic Extracellular Electron Transfer by the Filamentous Bacterium Ardenticatena maritima 110S

Y. Sako, K. Hashimoto, Takehiro Suzuki, 2018, Front. Microbiol..

Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases

H. Ogata, Y. Sako, Takashi Yoshida, 2019, Front. Microbiol..

Ardenticatena maritima gen. nov., sp. nov., a ferric iron- and nitrate-reducing bacterium of the phylum 'Chloroflexi' isolated from an iron-rich coastal hydrothermal field, and description of Ardenticatenia classis nov.

Y. Sako, Takashi Yoshida, T. Sugawara, 2013, International journal of systematic and evolutionary microbiology.

Rapid Microcystis Cyanophage Gene Diversification Revealed by Long- and Short-Term Genetic Analyses of the Tail Sheath Gene in a Natural Pond

Y. Sako, Takashi Yoshida, Shigeko Kimura, 2013, Applied and Environmental Microbiology.

Bacterial and Archaeal Diversity in an Iron-Rich Coastal Hydrothermal Field in Yamagawa, Kagoshima, Japan

Y. Sako, Takashi Yoshida, Satoshi Kawaichi, 2013, Microbes and environments.

Carbon monoxide-dependent transcriptional changes in a thermophilic, carbon monoxide-utilizing, hydrogen-evolving bacterium Calderihabitans maritimus KKC1 revealed by transcriptomic analysis

Y. Sako, Takashi Yoshida, Kimiho Omae, 2020, Extremophiles.

Diversification of CRISPR within coexisting genotypes in a natural population of the bloom-forming cyanobacterium Microcystis aeruginosa.

Y. Sako, Takashi Yoshida, Sotaro Kuno, 2014, Microbiology.

Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids

J. Claverie, H. Ogata, Takashi Yoshida, 2011, Virology Journal.

Transcriptome analysis of a thermophilic and hydrogenogenic carboxydotroph Carboxydothermus pertinax

Y. Sako, Takashi Yoshida, Kimiho Omae, 2019, Extremophiles.

Detection of anaerobic carbon monoxide-oxidizing thermophiles in hydrothermal environments.

Y. Sako, Takashi Yoshida, Y. Yoneda, 2015, FEMS microbiology ecology.

Intricate Interactions between the Bloom-Forming Cyanobacterium Microcystis aeruginosa and Foreign Genetic Elements, Revealed by Diversified Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Signatures

Y. Sako, T. Kaneko, Takashi Yoshida, 2012, Applied and Environmental Microbiology.

A protein binding to an upstream sequence of ftsZ involved in coordination of DNA replication and cell division in Microcystis aeruginosa

Y. Sako, Takashi Yoshida, T. Honda, 2012, Fisheries Science.

Cryopreservation of a Myovirus Infecting the Toxin-Producing Cyanobacterium Microcystis aeruginosa

Takashi Yoshida, K. Nagasaki, A. Kashima, 2007 .

Genomic Analysis of Calderihabitans maritimus KKC1, a Thermophilic, Hydrogenogenic, Carboxydotrophic Bacterium Isolated from Marine Sediment

Y. Sako, Takashi Yoshida, Y. Yoneda, 2017, Applied and Environmental Microbiology.

Spatial and temporal variability of unicellular diazotrophic cyanobacteria in the eastern Seto Inland Sea

Y. Sako, Takashi Yoshida, H. Watai, 2016, Fisheries Science.

Transcriptome Analysis of a Bloom-Forming Cyanobacterium Microcystis aeruginosa during Ma-LMM01 Phage Infection

Y. Sako, Takashi Yoshida, D. Morimoto, 2018, Front. Microbiol..

Gene expression of Microcystis aeruginosa during infection of cyanomyovirus Ma-LMM01

Y. Sako, Takashi Yoshida, T. Honda, 2013, Fisheries Science.

A Simple, Large-Scale Overexpression Method of Deriving Carbon Monoxide Dehydrogenase II from Thermophilic Bacterium Carboxydothermus hydrogenoformans

Y. Sako, Takashi Yoshida, Takahiro Inoue, 2011, Bioscience, biotechnology, and biochemistry.

Isolation and Characterization of a Cyanophage Infecting the Toxic Cyanobacterium Microcystis aeruginosa

Takashi Yoshida, K. Nagasaki, Y. Tomaru, 2006, Applied and Environmental Microbiology.

Taxonomic difference in marine bloom-forming phytoplanktonic species affects dynamics of both bloom-responding prokaryotes and prokaryotic viruses

Takashi Yoshida, Keigo Yamamoto, Kento Tominaga, 2023, bioRxiv.

Isolation, Genomic Sequence and Physiological Characterization of Parageobacillus sp. G301, an Isolate Capable of Both Hydrogenogenic and Aerobic Carbon Monoxide Oxidation

Y. Sako, Takashi Yoshida, M. Inoue, 2023, Applied and environmental microbiology.

Genetic Engineering of Carbon Monoxide-dependent Hydrogen-producing Machinery in Parageobacillus thermoglucosidasius

Y. Sako, Takashi Yoshida, M. Inoue, 2020, Microbes and environments.

Biome-specific distribution of Ni-containing carbon monoxide dehydrogenases

Y. Sako, Takashi Yoshida, Kimiho Omae, 2022, Extremophiles.

Draft Genome Sequences of Two Thermophilic Moorella sp. Strains, Isolated from an Acidic Hot Spring in Japan

Y. Sako, Takashi Yoshida, Kimiho Omae, 2019, Microbiology Resource Announcements.

Draft Genome Sequence of Parageobacillus thermoglucosidasius Strain TG4, a Hydrogenogenic Carboxydotrophic Bacterium Isolated from a Marine Sediment

Y. Sako, Takashi Yoshida, H. Maeda, 2019, Microbiology Resource Announcements.

Draft Genome Sequence of a Heterotrophic Facultative Anaerobic Thermophilic Bacterium, Ardenticatena maritima Strain 110ST

Y. Sako, Takashi Yoshida, Ryuhei Nakamura, 2015, Genome Announcements.

Ecological Dynamics of Broad- and Narrow-Host-Range Viruses Infecting the Bloom-Forming Toxic Cyanobacterium Microcystis aeruginosa

Y. Sako, Takashi Yoshida, S. Nakagawa, 2023, Applied and environmental microbiology.

Development and Application of Quantitative Detection of Cyanophages Phylogenetically Related to Cyanophage Ma-LMM01 Infecting Microcystis aeruginosa in Fresh Water

Takashi Yoshida, K. Nagasaki, Mitsuhiro Yoshida, 2007 .

Real-time PCR detection of host-mediated cyanophage gene transcripts during infection of a natural Microcystis aeruginosa population.

Takashi Yoshida, Mitsuhiro Yoshida, Yukari Yoshida-Takashima, 2010, Microbes and environments.

LexA Binds to Transcription Regulatory Site of Cell Division Gene ftsZ in Toxic Cyanobacterium Microcystis aeruginosa

Y. Sako, Takashi Yoshida, D. Morimoto, 2018, Marine Biotechnology.

Diversity and distribution of thermophilic hydrogenogenic carboxydotrophs revealed by microbial community analysis in sediments from multiple hydrothermal environments in Japan

Y. Sako, Takashi Yoshida, Kimiho Omae, 2019, Archives of Microbiology.

Characteristics of the rumen virome in Japanese cattle

Takashi Yoshida, H. Kumagai, H. Hirooka, 2023, bioRxiv.

Genetic diversity of Microcystis cyanophages in two different freshwater environments

Y. Sako, Takashi Yoshida, Shigeko Kimura, 2014, Archives of Microbiology.

aeruginosa and Foreign Genetic Elements Revealed by Diversified CRISPR Signatures

Y. Sako, T. Kaneko, Takashi Yoshida, 2012 .

Gene expression of Microcystis aeruginosa during infection of cyanomyovirus Ma-LMM01

Y. Sako, Takashi Yoshida, T. Honda, 2013, Fisheries Science.

Application of a Real-time PCR Assay to a Comprehensive Method of Monitoring Harmful Algae

Y. Sako, Takashi Yoshida, K. Oyama, 2006 .

Cysteine 295 indirectly affects Ni coordination of carbon monoxide dehydrogenase-II C-cluster.

Y. Sako, Takashi Yoshida, Y. Yoneda, 2013, Biochemical and biophysical research communications.

Construction of multiple metagenome assembled genomes containing carbon monoxide dehydrogenases from anaerobic carbon monoxide enrichment cultures

Y. Sako, Takashi Yoshida, Kimiho Omae, 2023, Archives of Microbiology.

Metagenomic exploration of viral diversity and virus-host interactions in a deep freshwater lake

H. Ogata, Takashi Yoshida, Y. Okazaki, 2019 .

Cysteine 295 indirectly affects Ni coordination of carbon monoxide dehydrogenase-II C-cluster.

Y. Sako, Takashi Yoshida, Y. Yoneda, 2013, Biochemical and biophysical research communications.

Y. Sako, T. Kaneko, Takashi Yoshida, 2012, Applied and Environmental Microbiology.

Yoko Microcystis aeruginosa Cyanobacterium Cyanophage Infecting the Toxic Isolation and Characterization of a

Takashi Yoshida, Y. Tomaru, Y. Shirai, 2006 .

Quantitative detection of carboxydotrophic bacteria Carboxydothermus in a hot aquatic environment

Y. Sako, Takashi Yoshida, Y. Yoneda, 2013 .