S. Kittelmann

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PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities

Sean P. Gilmore, J. Edwards, H. Smidt, 2017, Front. Microbiol..

Internal Transcribed Spacer 1 Secondary Structure Analysis Reveals a Common Core throughout the Anaerobic Fungi (Neocallimastigomycota)

M. Wolf, T. Müller, C. Koetschan, 2014, PloS one.

The Effects of Weaning Methods on Gut Microbiota Composition and Horse Physiology

P. Gérard, M. Moroldo, M. Moisan, 2017, Front. Physiol..

Phylotype-Level Characterization of Complex Communities of Lactobacilli Using a High-Throughput, High-Resolution Phenylalanyl-tRNA Synthetase (pheS) Gene Amplicon Sequencing Approach

S. Kittelmann, N. Menon, H. Fan, 2020, Applied and Environmental Microbiology.

Two Different Bacterial Community Types Are Linked with the Low-Methane Emission Trait in Sheep

Siva Ganesh, Peter H. Janssen, John C. McEwan, 2014, PloS one.

Assessment of the Accuracy of High-Throughput Sequencing of the ITS1 Region of Neocallimastigomycota for Community Composition Analysis

J. Edwards, Bart Nijsse, H. Smidt, 2019, Front. Microbiol..

An adhesin from hydrogen-utilizing rumen methanogen Methanobrevibacter ruminantium M1 binds a broad range of hydrogen-producing microorganisms.

S. Kittelmann, P. Janssen, J. Rakonjac, 2016, Environmental microbiology.

A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling

R. Brauning, J. McEwan, S. Kittelmann, 2019, bioRxiv.

BRIEF COMMUNICATION: Genetic control of the rumen microbiome in sheep

S. Kittelmann, P. Janssen, S. Ganesh, 2015 .

Microbiome and Human Health: Current Understanding, Engineering, and Enabling Technologies

In Young Hwang, S. Kittelmann, Nikhil Aggarwal, 2022, Chemical reviews.

Genomic insights into the physiology of Quinella, an iconic uncultured rumen bacterium

R. Jáuregui, S. Kittelmann, Janine Kamke, 2022, Nature Communications.

Characterization and rank assignment criteria for the anaerobic fungi (Neocallimastigomycota).

Kevin V. Solomon, J. Edwards, M. Lebuhn, 2022, International journal of systematic and evolutionary microbiology.

A Proposed Taxonomy of Anaerobic Fungi (Class Neocallimastigomycetes) Suitable for Large-Scale Sequence-Based Community Structure Analysis

S. Kittelmann, P. Janssen, J. Koolaard, 2012, PloS one.

Key Ecological Roles for Zoosporic True Fungi in Aquatic Habitats.

F. Gleason, S. Kittelmann, F. V. van Ogtrop, 2017, Microbiology spectrum.

Anaerobic fungal communities differ along the horse digestive tract.

J. Edwards, S. Kittelmann, K. Fliegerová, 2019, Fungal biology.

Post-Weaning Diet Affects Faecal Microbial Composition but Not Selected Adipose Gene Expression in the Cat (Felis catus)

K. Swanson, W. Young, N. Roy, 2013, PloS one.

Dietary format alters fecal bacterial populations in the domestic cat (Felis catus)

K. Swanson, W. Young, N. Roy, 2013, MicrobiologyOpen.

Nitrogen metabolism and rumen microbial enumeration in lactating cows with divergent residual feed intake fed high-digestibility pasture.

G. Waghorn, S. Kittelmann, P. Janssen, 2012, Journal of dairy science.

New Zealand Society of Animal Production online archive

S. Kittelmann, G. Henderson, 1999 .

Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation

E. Rubin, J. Froula, Yang Li, 2016, Microbiome.

Phylogeny of Intestinal Ciliates, Including Charonina ventriculi, and Comparison of Microscopy and 18S rRNA Gene Pyrosequencing for Rumen Ciliate Community Structure Analysis

H. Seedorf, S. Kittelmann, P. Janssen, 2015, Applied and Environmental Microbiology.

Five-week dietary exposure to dry diets alters the faecal bacterial populations in the domestic cat (Felis catus).

W. Young, N. Roy, S. Kittelmann, 2011, The British journal of nutrition.

Isolation of previously uncultured rumen bacteria by dilution to extinction using a new liquid culture medium.

S. Kittelmann, P. Janssen, G. Henderson, 2011, Journal of microbiological methods.

Natural variation in methane emission of sheep fed on a lucerne pellet diet is unrelated to rumen ciliate community type.

J. McEwan, H. Seedorf, S. Kittelmann, 2016, Microbiology.

Characterization of rumen ciliate community composition in domestic sheep, deer, and cattle, feeding on varying diets, by means of PCR-DGGE and clone libraries.

S. Kittelmann, P. Janssen, 2011, FEMS microbiology ecology.

Editorial: Advances in the Understanding of the Commensal Eukaryota and Viruses of the Herbivore Gut

J. Edwards, S. Dagar, S. Kittelmann, 2021, Frontiers in Microbiology.

Methane emissions changed nonlinearly with graded substitution of alfalfa silage with corn silage and corn grain in the diet of sheep and relation with rumen fermentation characteristics in vivo and in vitro.

S. Kittelmann, P. Janssen, D. Pacheco, 2016, Journal of animal science.

Temporal fermentation and microbial community dynamics in rumens of sheep grazing a ryegrass-based pasture offered either in the morning or in the afternoon.

S. Kittelmann, P. Janssen, S. Ganesh, 2019, Animal : an international journal of animal bioscience.

Seasonal Variation in the Faecal Microbiota of Mature Adult Horses Maintained on Pasture in New Zealand

P. Biggs, S. Kittelmann, E. Gee, 2021, Animals : an open access journal from MDPI.

Phylotype-Level Characterization of Complex Lactobacilli Communities Using a High-Throughput, High-Resolution Phenylalanyl-tRNA Synthetase (pheS) Gene Amplicon Sequencing Approach

S. Kittelmann, N. Menon, H. Fan, 2020, bioRxiv.

Faecal Microbiota of Forage-Fed Horses in New Zealand and the Population Dynamics of Microbial Communities following Dietary Change

S. Kittelmann, E. Gee, C. Rogers, 2014, PloS one.

Genome-wide high-throughput signal peptide screening via plasmid pUC256E improves protease secretion in Lactiplantibacillus plantarum and Pediococcus acidilactici

S. Kittelmann, H. Fan, Binbin Chen, 2022, BMC Genomics.

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

Dongwan D. Kang, A. Visel, S. Deutsch, 2014, Genome research.

Species- and site-specific bacterial communities associated with four encrusting bryozoans from the North Sea, Germany

T. Harder, S. Kittelmann, 2005 .

Novel uncultured Chloroflexi dechlorinate perchloroethene to trans-dichloroethene in tidal flat sediments.

S. Kittelmann, M. Friedrich, 2008, Environmental microbiology.

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

J. Clemente, R. Knight, J. Gordon, 2013, PloS one.

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

Peter H. Janssen, Gemma Henderson, G. Waghorn, 2013, PloS one.

Few Highly Abundant Operational Taxonomic Units Dominate within Rumen Methanogenic Archaeal Species in New Zealand Sheep and Cattle

H. Seedorf, S. Kittelmann, P. Janssen, 2014, Applied and Environmental Microbiology.

Rumen Microbial Community Profiling as a Tool to Study Ruminant Production

H. Seedorf, S. Kittelmann, P. Janssen, 2014 .

the sheep rumen microbiome Methane yield phenotypes linked to differential gene expression in

Axel Visel, Jeff Froula, William J. Kelly, 2014 .

Effects of long-acting, broad spectra anthelmintic treatments on the rumen microbial community compositions of grazing sheep

W. Young, S. Kittelmann, P. Janssen, 2021, Scientific Reports.

Ligilactobacillus ubinensis sp. nov., a novel species isolated from the wild ferment of a durian fruit (Durio zibethinus).

S. Kittelmann, N. Menon, Shaktheeshwari Silvaraju, 2023, International journal of systematic and evolutionary microbiology.

Distributed under Creative Commons Cc-by 4.0 Rim-db: a Taxonomic Framework for Community Structure Analysis of Methanogenic Archaea from the Rumen and Other Intestinal Environments

H. Seedorf, S. Kittelmann, P. Janssen, 2022 .

Identification of novel perchloroethene-respiring microorganisms in anoxic river sediment by RNA-based stable isotope probing.

S. Kittelmann, M. Friedrich, 2007, Environmental microbiology.

Resilience of Faecal Microbiota in Stabled Thoroughbred Horses Following Abrupt Dietary Transition between Freshly Cut Pasture and Three Forage-Based Diets

P. Biggs, S. Kittelmann, E. Gee, 2021, Animals : an open access journal from MDPI.

Adaptations of fungi and fungal-like organisms for growth under reduced dissolved oxygen concentrations

D. Natvig, F. Gleason, S. Kittelmann, 2017 .

Comparison of gastrointestinal transit times in stabled Thoroughbred horses fed freshly cut pasture and three conserved forage-based diets

S. Kittelmann, E. Gee, C. Rogers, 2021, Animal Production Science.

Natural variation in methane emission of sheep fed on a lucerne pellet diet is unrelated to rumen ciliate community type.

J. McEwan, H. Seedorf, S. Kittelmann, 2016, Microbiology.

Buccal Swabbing as a Noninvasive Method To Determine Bacterial, Archaeal, and Eukaryotic Microbial Community Structures in the Rumen

S. Kittelmann, P. Janssen, A. Jonker, 2015, Applied and Environmental Microbiology.