D. Debroas

J. Izopet, D. Debroas, J. Bailly, 2018, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

New insights into the pelagic microorganisms involved in the methane cycle in the meromictic Lake Pavin through metagenomics

Najwa Taib, D. Debroas, Corentin Hochart, 2018, FEMS microbiology ecology.

Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes

D. Debroas, E. Dugat-Bony, P. Peyret, 2016, PloS one.

Interactions between proteolytic and cellulolytic rumen bacteria during hydrolysis of plant cell wall protein.

D. Debroas, G. Blanchart, 1993, Reproduction, nutrition, development.

Diversity of Rare and Abundant Prokaryotic Phylotypes in the Prony Hydrothermal Field and Comparison with Other Serpentinite-Hosted Ecosystems

G. Erauso, B. Ollivier, D. Debroas, 2018, Front. Microbiol..

Freshwater Perkinsea: diversity, ecology and genomic information

G. Bronner, D. Debroas, D. Marie, 2020 .

Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments

D. Debroas, R. Duran, C. Garnier, 2016, Front. Microbiol..

Transient Dynamics of Archaea and Bacteria in Sediments and Brine Across a Salinity Gradient in a Solar Saltern of Goa, India

Najwa Taib, G. Bronner, D. Debroas, 2020, Frontiers in Microbiology.

Community composition and activity of prokaryotes associated to detrital particles in two contrasting lake ecosystems.

D. Debroas, C. Lemarchand, L. Jardillier, 2006, FEMS microbiology ecology.

Regulation of β-and α-glycolytic activities in the sediments of a eutrophic lake

D. Debroas, C. Mallet, 2001, Microbial Ecology.

Regulation of D- and ac-Glycolytic Activities in the Sediments of

D. Debroas, C. Mallet, 2001 .

Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems.

G. Bronner, D. Debroas, S. Roux, 2011, FEMS microbiology ecology.

Bacterial Production in the Recently Flooded Sep Reservoir: Diel Changes in Relation to Dissolved Carbohydrates and Combined Amino Acids

D. Debroas, L. Jugnia, M. Richardot, 2006, Hydrobiologia.

Incorporation of 3H-Thymidine by Different Prokaryotic Groups in Relation to Temperature and Nutrients in a Lacustrine Ecosystem

D. Debroas, M. Richardot, D. Boucher, 2006, Microbial Ecology.

Decomposition of protein compounds in an eutrophic lake: spatial and temporal distribution of exopeptidase and endopeptidase activities in various size fractions

D. Debroas, 1998, Hydrobiologia.

Viruses as key reservoirs of antibiotic resistance genes in the environment

D. Debroas, Cléa Siguret, 2019, The ISME Journal.

Functioning of a lacustrine ecosystem in a newly flooded reservoir (Sep, Puy de Dôme, France): modelling of carbon flux between the different food web compartments

D. Debroas, M. Poulin, M. Richardot, 2002 .

Bacterivory of metazooplankton, ciliates and flagellates in a newly flooded reservoir

D. Debroas, M. Richardot, J. Devaux, 1999 .

Bacteria—phytoplankton relationships in a recently formed reservoir (Sep, France)

D. Debroas, L. Jugnia, T. Sime-Ngando, 2001 .

Diversity and Structure of the Prokaryotic Communities Indigenous to Two Volcanic Lakes: Nyos and Monoun in Cameroon

D. Debroas, P. Ngassam, P. Nana, 2020, Open Journal of Ecology.

Plasmidome analysis of a hospital effluent biofilm: Status of antibiotic resistance.

D. Debroas, C. Forestier, C. Hennequin, 2022, Plasmid.

Influence of cladoceran grazing activity on dissolved organic matter, enzymatic hydrolysis and bacterial growth

D. Debroas, M. Richardot, J. Devaux, 2001 .

Impact of natural metazooplankton assemblage on planktonic microbial communities in a newly flooded reservoir

D. Debroas, M. Richardot, J. Devaux, 1999 .

Size-Fractionated Phytoplankton and Relationships with Metazooplankton in a Newly Flooded Reservoir

D. Debroas, D. Gilbert, T. Sime-Ngando, 2003 .

Seasonal microbial dynamics in the ocean inferred from assembled and unassembled data: a view on the unknown biosphere

D. Debroas, Corentin Hochart, P. Galand, 2022, ISME Communications.

Anaerobic Microbial Communities in Lake Pavin, a Unique Meromictic Lake in France

D. Debroas, G. Fonty, A. Lehours, 2005, Applied and Environmental Microbiology.

Honeybee gut microbiota dysbiosis in pesticide/parasite co-exposures is mainly induced by Nosema ceranae.

D. Debroas, F. Delbac, M. Diogon, 2020, Journal of invertebrate pathology.

Regulation of aminopeptidase activity in the sediments of a eutrophic lake

D. Debroas, C. Mallet, 2000 .

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea

I. Domaizon, Najwa Taib, G. Bronner, 2015, Microbial Ecology.

Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity

F. Arnaud, I. Domaizon, D. Debroas, 2015, Microbial Ecology.

Isolated from Lake Sediments Total Cyanobacteria in Preserved DNA Total/Toxic Planktothrix rubescens and Quantitative PCR Enumeration of

F. Arnaud, I. Domaizon, D. Debroas, 2011 .

Proteolytic and glycolytic activities in size-fractionated surface water samples from an oligotrophic reservoir in relation to plankton communities

D. Debroas, M. Richardot, J. Devaux, 1999, Aquatic Sciences.

FreshOmics: A manually curated and standardized –omics database for investigating freshwater microbiomes

G. Bronner, D. Debroas, Corinne Biderre-Petit, 2022, Molecular ecology resources.

Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations

P. Taberlet, S. Bertilsson, A. V. van Woerkom, 2021, Quaternary.

Initial results of remediation activities to restore hypereutrophic Villerest Reservoir (Roanne, France)

D. Debroas, L. Jugnia, J. Devaux, 2004 .

Breakdown of peptides from a casein hydrolysate by rumen bacteria. Simultaneous study of enzyme activities and physicochemical parameters.

D. Debroas, G. Blanchart, N. Depardon, 1996, Reproduction, nutrition, development.

Breakdown of peptides from a soya protein hydrolysate by rumen bacteria. Simultaneous study of enzyme activities and of two physico-chemical parameters : molecular weight and hydrophobicity

D. Debroas, G. Blanchart, N. Depardon, 1995 .

Effects of phenolic monomers on the growth and the proteolytic activity of rumen bacteria

D. Debroas, G. Blanchart, 1993 .

Temporal variations of Microsporidia diversity and discovery of new host-parasite interactions in a lake ecosystem.

D. Debroas, Anne Moné, A. Dubuffet, 2022, Environmental microbiology.

A phylogenetic framework to investigate the microsporidian communities through metabarcoding and its application to lake ecosystems.

D. Debroas, M. Chauvet, Anne Moné, 2021, Environmental microbiology.

Characteristics of extracellular protease formation by a rumen microorganism Clostridium bifermentans and its possible role in the hydrolysis of proteins in the rumen

D. Debroas, G. Blanchart, 1993 .

In vitro study of molecular weight, hydrophobicity and amino acid composition of peptides during breakdown of a casein hydrolysate by two strains of Prevotella ruminicola.

D. Debroas, G. Blanchart, N. Depardon, 1998, Reproduction, nutrition, development.

DNA from lake sediments reveals the long-term dynamics and diversity of Synechococcus assemblages

F. Arnaud, C. Pignol, I. Domaizon, 2013 .

Monitoring of enterovirus diversity in wastewater by ultra-deep sequencing: An effective complementary tool for clinical enterovirus surveillance.

D. Debroas, J. Bailly, H. Peigue-Lafeuille, 2019, Water research.

Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review

I. Domaizon, Jean-François Mangot, D. Debroas, 2010, Hydrobiologia.

Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems.

D. Bass, M. Dunthorn, C. de Vargas, 2020, Environment international.

Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data.

I. Domaizon, J. Humbert, D. Debroas, 2017, FEMS microbiology ecology.

Influence of zooplankton and phytoplankton on the fatty acid composition of digesta and tissue lipids of silver carp: mesocosm experiment

I. Domaizon, D. Debroas, C. Desvilettes, 2000 .

Genetic Diversity of Small Eukaryotes in Lakes Differing by Their Trophic Status

D. Debroas, M. Lefranc, A. Thénot, 2005, Applied and Environmental Microbiology.

Phage Bacteriolysis, Protistan Bacterivory Potential, and Bacterial Production in a Freshwater Reservoir: Coupling with Temperature

D. Debroas, T. Sime-Ngando, D. Boucher, 2005, Microbial Ecology.

Variations in the number of active bacteria in the euphotic zone of a recently flooded reservoir

D. Debroas, L. Jugnia, T. Sime-Ngando, 2000 .

Community composition of lacustrine small eukaryotes in hyper-eutrophic conditions in relation to top-down and bottom-up factors.

I. Domaizon, D. Debroas, Cécile Lepère, 2007, FEMS microbiology ecology.

Unexpected Importance of Potential Parasites in the Composition of the Freshwater Small-Eukaryote Community

I. Domaizon, D. Debroas, Cécile Lepère, 2008, Applied and Environmental Microbiology.

Evidence for an active rare biosphere within freshwater protists community

I. Domaizon, D. Debroas, M. Hugoni, 2015, Molecular ecology.

Bottom-up and top-down control of bacterial community composition in the euphotic zone of a reservoir

I. Domaizon, D. Debroas, L. Jardillier, 2004 .

A study of changes between years in the structure of plankton community in a newly-flooded reservoir

D. Debroas, M. Richardot, J. Devaux, 2000 .

Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study

D. Debroas, C. Lavergne, C. Dupuy, 2018, Microbial Ecology.

Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus

C. Bernard, J. Humbert, D. Debroas, 2015, PloS one.

Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences

François Enault, Simon Roux, Mart Krupovic, 2013, Open Biology.

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

D. Debroas, S. Roux, François Enault, 2014, BMC Bioinformatics.

Long‐term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA

F. Arnaud, C. Pignol, A. Develle, 2016, Molecular ecology.

Diversity and Biogeography of Picoeukaryotes: New Insights into the Rare Biosphere

I. Domaizon, D. Debroas, Cécile Lepère, 2016 .

A strong link between marine microbial community composition and function challenges the idea of functional redundancy

D. Debroas, Olivier Pereira, Corentin Hochart, 2018, The ISME Journal.

Reconstruction of plasmids by shotgun sequencing from environmental DNA: which bioinformatic workflow?

Didier Debroas, Cécile Hilpert, Geneviève Bricheux, 2020, Briefings Bioinform..

Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA

L. Millet, D. Rius, I. Domaizon, 2020, Nature Communications.

Analysis of metagenomic data reveals common features of halophilic viral communities across continents.

P. Forterre, D. Prangishvili, Y. Bettarel, 2016, Environmental microbiology.

Metavir: a web server dedicated to virome analysis

François Enault, Simon Roux, Antoine Mahul, 2011, Bioinform..

Comparison of the structure and composition of bacterial communities from temperate and tropical freshwater ecosystems.

Philippe Cecchi, Didier Debroas, U. Dorigo, 2009, Environmental microbiology.

Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean

D. Debroas, Olivier Pereira, Corentin Hochart, 2019, MicrobiologyOpen.

Plastics in the North Atlantic garbage patch: A boat-microbe for hitchhikers and plastic degraders.

D. Debroas, A. ter Halle, Anne Moné, 2017, The Science of the total environment.

Effects of Viruses and Predators on Prokaryotic Community Composition

Y. Bettarel, D. Debroas, L. Jardillier, 2005, Microbial Ecology.

A Pediococcus strain to rescue honeybees by decreasing Nosema ceranae- and pesticide-induced adverse effects.

D. Debroas, F. Delbac, F. Chaucheyras-Durand, 2020, Pesticide biochemistry and physiology.

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis

François Enault, Simon Roux, Antoine Mahul, 2014, BMC Bioinformatics.

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea

I. Domaizon, Najwa Taib, G. Bronner, 2015, Microbial Ecology.

Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes.

I. Domaizon, Najwa Taib, D. Debroas, 2015, Environmental microbiology reports.

Community Structure and Dynamics of Small Eukaryotes Targeted by New Oligonucleotide Probes: New Insight into the Lacustrine Microbial Food Web

I. Domaizon, Jean-François Mangot, D. Debroas, 2009, Applied and Environmental Microbiology.

Succession of bacterial community composition over two consecutive years in two aquatic systems: a natural lake and a lake-reservoir.

D. Debroas, L. Jardillier, D. Boucher, 2006, FEMS microbiology ecology.

Bacterial communities associated with Microcystis colonies differ from free-living communities living in the same ecosystem.

J. Humbert, D. Debroas, C. Djédiat, 2013, Environmental microbiology reports.

Relative importance of nutrients and mortality factors on prokaryotic community composition in two lakes of different trophic status: microcosm experiments.

S. Jacquet, D. Debroas, L. Jardillier, 2005, FEMS microbiology ecology.

Bacterial Communities Associated with Four Cyanobacterial Genera Display Structural and Functional Differences: Evidence from an Experimental Approach

Lirong Song, C. Bernard, J. Humbert, 2016, Front. Microbiol..

Quantitative PCR Enumeration of Total/Toxic Planktothrix rubescens and Total Cyanobacteria in Preserved DNA Isolated from Lake Sediments

F. Arnaud, I. Domaizon, D. Debroas, 2011, Applied and Environmental Microbiology.

Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems.

I. Domaizon, Jean-François Mangot, G. Bronner, 2013, FEMS microbiology ecology.

Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems

V. Loux, J. Humbert, D. Debroas, 2015, Genetica.

Active microorganisms thrive among extremely diverse communities in cloud water

P. Amato, A. Delort, L. Deguillaume, 2017, PloS one.

Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems.

I. Domaizon, G. Bronner, D. Debroas, 2013, Research in microbiology.

Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake

D. Debroas, M. Hugoni, A. Vellet, 2017 .

Impact of environmental factors on couplings between bacterial community composition and ectoenzymatic activities in a lacustrine ecosystem.

D. Debroas, D. Boucher, 2009, FEMS microbiology ecology.

Effects of nutrients and warming on Planktothrix dynamics and diversity: a palaeolimnological view based on sedimentary DNA and RNA

F. Arnaud, I. Domaizon, D. Debroas, 2015 .

Temporal dynamics and phylogenetic diversity of free-living and particle-associated Verrucomicrobia communities in relation to environmental variables in a mesotrophic lake.

D. Debroas, V. Ravet, B. Parveen, 2013, FEMS microbiology ecology.

Diversity, spatial distribution and activity of fungi in freshwater ecosystems

I. Domaizon, J. Humbert, D. Debroas, 2019, PeerJ.

Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities.

I. Domaizon, Jean-François Mangot, G. Bronner, 2011, FEMS microbiology ecology.

Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France)

I. Domaizon, D. Debroas, M. Hugoni, 2016, Front. Microbiol..

Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus

C. Bernard, J. Humbert, D. Debroas, 2015, PloS one.

Rapid responses of pristine marine planktonic communities in experimental approach to diuron and naphthalene (Juan de Nova Island, Western Indian Ocean)

I. Domaizon, C. Leboulanger, D. Debroas, 2021, Marine and Freshwater Research.

Spatio-Temporal Variations of Marine Biofilm Communities Colonizing Artificial Substrata Including Antifouling Coatings in Contrasted French Coastal Environments

D. Debroas, C. Garnier, A. Bouchez, 2017, Microbial Ecology.

Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation

Y. Bettarel, S. Jacquet, I. Domaizon, 2012, BMC Microbiology.

Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France

J. Humbert, D. Debroas, Najwa Taïb, 2017, Scientific Reports.

Temporal covariation of epibacterial community and surface metabolome in the Mediterranean seaweed holobiont Taonia atomaria.

D. Debroas, G. Culioli, A. Othmani, 2019, Environmental microbiology.

Metagenomic Approach Studying the Taxonomic and Functional Diversity of the Bacterial Community in a Lacustrine Ecosystem

J. Humbert, D. Debroas, François Enault, 2011 .

A de novo robust clustering approach for amplicon-based sequence data

Engelbert Mephu Nguifo, Alexandre Bazin, Didier Debroas, 2017, CNIA+RJCIA.

Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France

J. Humbert, D. Debroas, Najwa Taïb, 2017, Scientific Reports.

Metavir : a web server dedicated to virome analysis

D. Debroas, S. Roux, A. Bernard, 2011 .

Bioinformatics Applications Note Data and Text Mining Metavir: a Web Server Dedicated to Virome Analysis

D. Debroas, S. Roux, François Enault, 2022 .

Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes.

I. Domaizon, Najwa Taib, D. Debroas, 2015, Environmental microbiology reports.

Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities.

I. Domaizon, Jean-François Mangot, G. Bronner, 2011, FEMS microbiology ecology.

A high-throughput sequencing ecotoxicology study of freshwater bacterial communities and their responses to tebuconazole.

J. Humbert, D. Debroas, S. Roux, 2014, FEMS microbiology ecology.

Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater

D. Debroas, Imen Louati, 2016 .

Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems

V. Loux, J. Humbert, D. Debroas, 2014, Genetica.

Viruses as key reservoirs of antibiotic resistance genes in the environment

D. Debroas, Cléa Siguret, 2019, The ISME Journal.