M. Ansariola

Accurate transcription start sites enable mining for the cis-regulatory determinants of tissue specific gene expression

Shawn T. O'Neil, Russell A. Gould, M. Megraw, 2020, bioRxiv.

Identification of transcription factors from NF-Y, NAC, and SPL families responding to osmotic stress in multiple tomato varieties.

M. Megraw, S. Filichkin, M. Ansariola, 2018, Plant science : an international journal of experimental plant biology.

Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.

Molly Megraw, Raluca Gordân, Siobhan M Brady, 2016, Developmental cell.

IndeCut evaluates performance of network motif discovery algorithms

Molly Megraw, David Koslicki, Mitra Ansariola, 2017, bioRxiv.

PlantSimLab - a modeling and simulation web tool for plant biologists

J. McDowell, S. Ha, E. Dimitrova, 2019, BMC Bioinformatics.

CytoKavosh: A Cytoscape Plug-In for Finding Network Motifs in Large Biological Networks

Sahand Khakabimamaghani, Ali Masoudi-Nejad, Ali Salehzadeh-Yazdi, 2012, PloS one.

Comparative Analysis of Salinity Response Transcriptomes in Salt-Tolerant Pokkali and Susceptible IR29 Rice

Samuel E. Fox, M. Megraw, P. Jaiswal, 2023, bioRxiv.