A. Krebs

发表

CG dinucleotides enhance promoter activity independent of DNA methylation

Lukas Burger, D. Schübeler, R. S. Grand, 2019, Genome research.

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation

Lukas Burger, D. Schübeler, A. Akalin, 2015, Nature.

Cell-specific occupancy of an extended repertoire of CREM and CREB binding loci in male germ cells

Paolo Sassone-Corsi, Tao Ye, Irwin Davidson, 2010, BMC Genomics.

A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity

Antoine H. F. M. Peters, Lukas Burger, D. Schübeler, 2020, Nature Communications.

Single molecule multi-omics reveals context-dependent regulation of enhancers by DNA methylation

A. Krebs, S. Kaspar, Elisa Kreibich, 2022, bioRxiv.

Single molecule occupancy patterns of transcription factors reveal determinants of cooperative binding in vivo

V. Beneš, D. Schübeler, A. Krebs, 2020, bioRxiv.

DNA sequence and chromatin modifiers cooperate to confer epigenetic bistability at imprinting control regions

F. Lienert, D. Schübeler, J. Zuber, 2022, Nature Genetics.

Cofactors: a new layer of specificity to enhancer regulation.

A. Krebs, Elisa Kreibich, 2022, Trends in biochemical sciences.

Cis-regulatory landscapes of four cell types of the retina

B. Roska, D. Schübeler, Dominik Hartl, 2017, Nucleic acids research.

A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity

Lukas Burger, D. Schübeler, Dimos Gaidatzis, 2020, Nature Communications.

Single-molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation.

A. Krebs, S. Kaspar, Elisa Kreibich, 2023, Molecular cell.

Genome-wide quantification of transcription factor binding at single-DNA-molecule resolution using methyl-transferase footprinting

Judith B. Zaugg, A. Krebs, Mike L. Smith, 2021, Nature Protocols.

BANP opens chromatin and activates CpG-island-regulated genes

Lukas Burger, D. Schübeler, M. Vermeulen, 2021, Nature.

Molecular Co-occupancy Identifies Transcription Factor Binding Cooperativity In Vivo.

V. Beneš, D. Schübeler, Nacho Molina, 2020, Molecular cell.

High-throughput engineering of a mammalian genome reveals building principles of methylation states at CG rich regions

Arnaud R Krebs, Lukas Burger, Dirk Schübeler, 2014, eLife.

Tracking the evolution of cancer methylomes

Arnaud R Krebs, Dirk Schübeler, D. Schübeler, 2012, Nature Genetics.

GPAT: Retrieval of genomic annotation from large genomic position datasets

Arnaud Krebs, Mattia Frontini, Làszlò Tora, 2008, BMC Bioinformatics.

H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells

H. Kimura, L. Tora, M. Oulad-Abdelghani, 2012, BMC Genomics.

seqMINER: an integrated ChIP-seq data interpretation platform

Tao Ye, Irwin Davidson, Arnaud R. Krebs, 2010, Nucleic acids research.

The metazoan ATAC and SAGA coactivator HAT complexes regulate different sets of inducible target genes

H. Stunnenberg, S. Kato, L. Tora, 2010, Cellular and Molecular Life Sciences.

SAGA and ATAC histone acetyl transferase complexes regulate distinct sets of genes and ATAC defines a class of p300-independent enhancers.

Kevin Struhl, Arnaud R Krebs, Làszlò Tora, 2011, Molecular cell.

Targeting neuronal and glial cell types with synthetic promoter AAVs in mice, non-human primates and humans

F. Esposti, B. Roska, A. Bharioke, 2018, Nature Neuroscience.

Interpreting and visualizing ChIP-seq data with the seqMINER software.

Tao Ye, Sarina Ravens, Arnaud R Krebs, 2014, Methods in molecular biology.

ATAC and Mediator coactivators form a stable complex and regulate a set of non‐coding RNA genes

Jeroen A. A. Demmers, L. Tora, A. Krebs, 2010, EMBO reports.

occupancy of an extended repertoire of CREM and CREB binding loci in male germ cells.

W. Ijcken, P. Sassone-Corsi, T. Ye, 2012 .

Title Cell-specific occupancy of an extended repertoire of CREM and CREB binding loci in male germ cells

W. Ijcken, P. Sassone-Corsi, T. Ye, 2010 .

Lessons from genome-wide studies: an integrated definition of the coactivator function of histone acetyl transferases

J. Thompson, L. Tora, K. Anamika, 2010, Epigenetics & Chromatin.

Genome-wide Single-Molecule Footprinting Reveals High RNA Polymerase II Turnover at Paused Promoters

Lukas Burger, D. Schübeler, Dimos Gaidatzis, 2017, Molecular cell.

H 3 K 9 and H 3 K 14 acetylation co-occur at many gene regulatory elements , while H 3 K 14 ac marks a subset of inactive inducible promoters in mouse embryonic stem cells

H. Kimura, L. Tora, M. Oulad-Abdelghani, 2012 .

The ATAC acetyl transferase complex controls mitotic progression by targeting non‐histone substrates

Marjorie Fournier, L. Tora, M. Frontini, 2010, The EMBO journal.

Keys to open chromatin for transcription activation: FACT and Asf1.

L. Tora, A. Krebs, 2009, Molecular cell.

Targeting neuronal and glial cell types with synthetic promoter AAVs in mice, non-human primates, and humans

Arjun Bharioke, Botond Roska, Federico Esposti, 2018, bioRxiv.

McQ - An open-source multiplexed SARS-CoV-2 quantification platform

S. C. Vonesch, D. Bredikhin, N. Dobrev, 2020, medRxiv.

Characterization of functional domains of mDia1, a link between the small GTPase Rho and the actin cytoskeleton.

A. Krebs, M. Rothkegel, B. Jockusch, 2001, Journal of cell science.

Identification of transcription factor co-binding patterns with non-negative matrix factorization

B. Lenhard, A. Mathelier, A. Krebs, 2023, bioRxiv.

Studying transcription factor function in the genome at molecular resolution.

A. Krebs, 2021, Trends in Genetics.

Relevance of DNA methylation at enhancers for the acquisition of cell identities

A. Krebs, Elisa Kreibich, 2023, FEBS letters.

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation

Lukas Burger, D. Schübeler, A. Akalin, 2015, Nature.

Faculty Opinions recommendation of Animal transcription networks as highly connected, quantitative continua.

Dirk Schübeler, Arnaud R. Krebs, D. Schübeler, 2011 .