Chamith Y Fonseka

Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes

Jean-Marie Rouillard, Brian J. Beliveau, Chamith Y. Fonseka, 2012, Proceedings of the National Academy of Sciences.

Notch signaling drives synovial fibroblast identity and arthritis pathology

N. Hacohen, C. Nusbaum, P. Gregersen, 2020, Nature.

Methods for high-dimensonal analysis of cells dissociated from cyropreserved synovial tissue

Shuqiang Li, N. Hacohen, C. Nusbaum, 2018, Arthritis Research & Therapy.

Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry

Nir Hacohen, Kamil Slowikowski, Andrew Filer, 2019, Nature Immunology.

PD-1hi CXCR5- T peripheral helper cells promote B cells responses in lupus via MAF and IL-21.

A. V. Bocharnikov, M. Petri, B. Diamond, 2019, JCI insight.

Mixed-effects association of single cells identifies an expanded effector CD4+ T cell subset in rheumatoid arthritis

Kamil Slowikowski, Elizabeth W Karlson, Soumya Raychaudhuri, 2018, Science Translational Medicine.

Mixed Effects Association of Single Cells Identifies an Expanded Th1-Skewed Cytotoxic Effector CD4+ T Cell Subset in Rheumatoid Arthritis

S. Raychaudhuri, E. Karlson, M. Weinblatt, 2018 .

Leveraging blood and tissue CD4+ T cell heterogeneity at the single cell level to identify mechanisms of disease in rheumatoid arthritis.

S. Raychaudhuri, Chamith Y Fonseka, D. Rao, 2017, Current opinion in immunology.

Reverse Association of Single Cells to Rheumatoid Arthritis Accounting for Mixed Effects Identifies an Expanded CD27- HLA-DR+ Effector Memory CD4+ T Cell Population

S. Raychaudhuri, E. Karlson, M. Weinblatt, 2017, bioRxiv.

Structural disruption of genomic regions containing ultraconserved elements is associated with neurodevelopmental phenotypes

H. Brand, M. Talkowski, R. McCole, 2017, bioRxiv.