A. F. Siahpirani

A predictive modeling approach for cell line-specific long-range regulatory interactions

Alireza F. Siahpirani, Sara A. Knaack, R. Stewart, 2015, Nucleic acids research.

Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder

Alireza F. Siahpirani, S. Keleş, Sushmita Roy, 2019, bioRxiv.

Dynamic regulatory module networks for inference of cell type–specific transcriptional networks

Sara A. Knaack, R. Stewart, J. Thomson, 2020, bioRxiv.

A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti

Alireza F. Siahpirani, Nicholas W. Kwiecien, M. Westphall, 2016, Nature Biotechnology.

Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals1[OPEN]

Alireza F. Siahpirani, Deborah Chasman, Sang Cheol Kim, 2015, Plant Physiology.

Defining Reprogramming Checkpoints from Single-Cell Analyses of Induced Pluripotency

Alireza F. Siahpirani, Sushmita Roy, A. F. Siahpirani, 2019, Cell reports.