N. Hernandez

发表

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

O. Delaneau, A. Reymond, E. Dermitzakis, 2015, Cell.

Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells.

V. Praz, N. Hernandez, Donatella Canella, 2010, Genome research.

Splicing of in vitro synthesized messenger RNA precursors in HeLa cell extracts

W. Keller, N. Hernandez, 1983, Cell.

Metabolic programming a lean phenotype by deregulation of RNA polymerase III

N. Hernandez, I. Willis, R. Moir, 2018, Proceedings of the National Academy of Sciences.

Transcriptional regulatory logic of the diurnal cycle in the mouse liver

S. Raghav, B. Deplancke, U. Schibler, 2016, bioRxiv.

Transcriptional regulatory logic of the diurnal cycle in the mouse liver

S. Raghav, B. Deplancke, U. Schibler, 2016, bioRxiv.

Actin's latest act: polymerizing to facilitate transcription?

N. Hernandez, E. Vieu, 2006, Nature Cell Biology.

Targeting TBP to a non-TATA box cis-regulatory element: a TBP-containing complex activates transcription from snRNA promoters through the PSE.

R. W. Henry, N. Hernandez, C. L. Sadowski, 1993, Genes & development.

Redundant Cooperative Interactions for Assembly of a Human U6 Transcription Initiation Complex

N. Hernandez, B. Ma, 2002, Molecular and Cellular Biology.

A 7 bp mutation converts a human RNA polymerase II snRNA promoter into an RNA polymerase III promoter

N. Hernandez, S. Lobo, 1989, Cell.

The cloned RNA polymerase II transcription factor IID selects RNA polymerase III to transcribe the human U6 gene in vitro.

N. Hernandez, S. Lobo, J. Lister, 1991, Genes & development.

Flexible DNA Binding of the BTB/POZ-domain Protein FBI-1*

N. Hernandez, F. Pessler, 2003, Journal of Biological Chemistry.

FBI-1 can stimulate HIV-1 Tat activity and is targeted to a novel subnuclear domain that includes the Tat-P-TEFb-containing nuclear speckles.

Sui Huang, N. Hernandez, P. S. Pendergrast, 2002, Molecular biology of the cell.

A shared surface of TBP directs RNA polymerase II and III transcription via association with different TFIIB family members.

W. Herr, N. Hernandez, L. Schramm, 2003, Molecular cell.

A TBP complex essential for transcription from TATA-less but not TATA-containing RNA polymerase III promoters is part of the TFIIB fraction

N. Hernandez, Masafumi Tanaka, S. Lobo, 1992, Cell.

Does Pol I talk to Pol II? Coordination of RNA polymerases in ribosome biogenesis.

N. Hernandez, A. Michels, 2006, Genes & development.

CHD8 Associates with Human Staf and Contributes to Efﬁcient U6 RNA Polymerase III Transcription (cid:1)

M. Washburn, L. Florens, S. Swanson, 2007 .

MAF1 is a chronic repressor of RNA polymerase III transcription in the mouse

V. Praz, N. Hernandez, I. Willis, 2019, Scientific Reports.

Chronic repression by MAF1 supports futile RNA cycling as a mechanism for obesity resistance

V. Praz, N. Hernandez, I. Willis, 2019, bioRxiv.

The General Transcription Factors IIA, IIB, IIF, and IIE Are Required for RNA Polymerase II Transcription from the Human U1 Small Nuclear RNA Promoter

D. Reinberg, H. Cho, N. Hernandez, 1999, Molecular and Cellular Biology.

The largest subunit of human RNA polymerase III is closely related to the largest subunit of yeast and trypanosome RNA polymerase III.

N. Hernandez, S. Sepehri, Setareh Sepehri, 1997, Genome research.

Formation of the 3′ end of U1 snRNA is directed by a conserved sequence located downstream of the coding region.

N. Hernandez, 1985, The EMBO journal.

Signals regulating hepatitis B surface antigen transcription

H. Will, N. Hernandez, H. Schaller, 1983, Nature.

Crossing the line between RNA polymerases: transcription of human snRNA genes by RNA polymerases II and III.

R. W. Henry, N. Hernandez, E. Ford, 1998, Cold Spring Harbor symposia on quantitative biology.

Identification of novel functional TBP‐binding sites and general factor repertoires

H. Stunnenberg, R. Wehrens, M. V. van Driel, 2007, The EMBO journal.

Coordinated Effects of Sequence Variation on DNA Binding, Chromatin Structure, and Transcription

Leighton J. Core, A. Reymond, E. Dermitzakis, 2013, Science.

SNAP19 mediates the assembly of a functional core promoter complex (SNAPc) shared by RNA polymerases II and III.

R. Kobayashi, R. W. Henry, N. Hernandez, 1998, Genes & development.

cis-acting elements required for RNA polymerase II and III transcription in the human U2 and U6 snRNA promoters.

N. Hernandez, S. Lobo, S. Ifill, 1990, Nucleic acids research.

A minimal RNA polymerase III transcription system from human cells reveals positive and negative regulatory roles for CK2.

Si Wu, N. Hernandez, Ping Hu, 2003, Molecular cell.

RNA polymerase III transcription from the human U6 and adenovirus type 2 VAI promoters has different requirements for human BRF, a subunit of human TFIIIB

R. Kobayashi, N. Hernandez, R. Mital, 1996, Molecular and cellular biology.

A role for beta-actin in RNA polymerase III transcription.

Si Wu, N. Hernandez, Ping Hu, 2004, Genes & development.

Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles

N. Guex, M. Delorenzi, J. Rougemont, 2012, PLoS biology.

Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation

Dina Grohmann, A. Vannini, N. Hernandez, 2017, Nature Communications.

actin in RNA polymerase III transcription β A role for

Si Wu, N. Hernandez, Ping Hu, 2012 .

Maf1, a New Player in the Regulation of Human RNA Polymerase III Transcription

N. Hernandez, J. Reina, Teldja N. Azzouz, 2006, PloS one.

A role for -actin in RNA polymerase III transcription

Si Wu, N. Hernandez, Ping Hu, 2004 .

Hernandez-actin in RNA polymerase III transcription β A role for Material

Si Wu, N. Hernandez, Ping Hu, 2004 .

Characterization of Human RNA Polymerase III Identifies Orthologues for Saccharomyces cerevisiae RNA Polymerase III Subunits

R. Kobayashi, M. Myers, Si Wu, 2002, Molecular and Cellular Biology.

Eeny meeny miny moe, catch a transcript by the toe, or how to enumerate eukaryotic transcripts.

N. Hernandez, T. Strick, 2012, Genes & development.

Mechanism of selective recruitment of RNA polymerases II and III to snRNA gene promoters

V. Praz, A. Vannini, N. Hernandez, 2018, Genes & development.

TBP, a universal eukaryotic transcription factor?

N. Hernandez, N Hernandez, 1993, Genes & development.

Recruitment of RNA polymerase III to its target promoters.

N. Hernandez, L. Schramm, 2002, Genes & development.

The SNAP45 subunit of the small nuclear RNA (snRNA) activating protein complex is required for RNA polymerase II and III snRNA gene transcription and interacts with the TATA box binding protein.

R. Kobayashi, R. W. Henry, N. Hernandez, 1996, Proceedings of the National Academy of Sciences of the United States of America.

How to Recruit the Correct RNA Polymerase? Lessons from snRNA Genes.

N. Hernandez, Oleksandr Dergai, 2019, Trends in genetics : TIG.

Reconstitution of Transcription from the Human U6 Small Nuclear RNA Promoter with Eight Recombinant Polypeptides and a Partially Purified RNA Polymerase III Complex*

N. Hernandez, S. Chong, Ping Hu, 2001, The Journal of Biological Chemistry.

Different human TFIIIB activities direct RNA polymerase III transcription from TATA-containing and TATA-less promoters.

N. Hernandez, Y. Sun, L. Schramm, 2000, Genes & development.

transcription from TATA-containing and TATA-less promoters Different human TFIIIB activities direct RNA polymerase III

N. Hernandez, L. Schramm, P. S. Pendergrast, 2000 .

SNAP 19 mediates the assembly of a functional core promoter complex ( SNAPc ) shared by RNA polymerases II and III

R. Kobayashi, R. W. Henry, N. Hernandez, 1998 .

Cloning and characterization of SNAP50, a subunit of the snRNA‐activating protein complex SNAPc.

R. Kobayashi, R. W. Henry, N. Hernandez, 1996, The EMBO journal.

RNA polymerase III transcription as a disease factor

N. Hernandez, M. Yeganeh, 2020, Genes & development.

A positioned nucleosome on the human U6 promoter allows recruitment of SNAPc by the Oct-1 POU domain.

N. Hernandez, X. Zhao, P. S. Pendergrast, 2001, Molecular cell.

Small Nuclear RNA Genes: a Model System to Study Fundamental Mechanisms of Transcription*

N. Hernandez, N Hernandez, 2001, The Journal of Biological Chemistry.

A transcribed enhancer dictates mesendoderm specification in pluripotency

Stephen L. Leib, Marco Mina, N. Hernandez, 2017, Nature Communications.

Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization

Gergana Bounova, Mauro Delorenzi, Winship Herr, 2014 .

Formation of the 3′ end of U1 snRNA requires compatible snRNA promoter elements

A. Weiner, N. Hernandez, 1986, Cell.

A TBP–TAF complex required for transcription of human snRNA genes by RNA polymerases II and III

R. Kobayashi, R. W. Henry, N. Hernandez, 1995, Nature.

Widespread occurrence of non-canonical transcription termination by human RNA polymerase III

V. Praz, M. Teichmann, D. Romascano, 2011, Nucleic acids research.

A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver.

M. Delorenzi, V. Praz, N. Hernandez, 2012, Genome research.

Loss of the RNA polymerase III repressor MAF1 confers obesity resistance

J. Auwerx, V. Praz, S. Chua, 2015, Genes & development.

A role for Yin Yang-1 (YY1) in the assembly of snRNA transcription complexes.

M. Washburn, L. Florens, S. Swanson, 2006, Gene.

CK2 phosphorylation of Bdp1 executes cell cycle-specific RNA polymerase III transcription repression.

Si Wu, N. Hernandez, Yuling Sun, 2004, Molecular cell.

Human MAF1 targets and represses active RNA polymerase III genes by preventing recruitment rather than inducing long-term transcriptional arrest

V. Praz, A. Orioli, N. Hernandez, 2016, Genome research.

CHD8 Associates with Human Staf and Contributes to Efficient U6 RNA Polymerase III Transcription

M. Washburn, L. Florens, S. Swanson, 2007, Molecular and Cellular Biology.

Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf 2 Graphical Abstract Highlights

Nouria Hernandez, A. Thompson, A. Vannini, 2015 .

Purification and characterization of FBI-1, a cellular factor that binds to the human immunodeficiency virus type 1 inducer of short transcripts

N. Hernandez, F. Pessler, P. S. Pendergrast, 1997, Molecular and cellular biology.

11 Transcription of Vertebrate snRNA Genes and Related Genes

N. Hernandez, 1992 .

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data

Sebastian M. Waszak, Emmanouil T. Dermitzakis, Alexandre Reymond, 2014, Bioinform..

Activation of the U2 snRNA promoter by the octamer motif defines a new class of RNA polymerase II enhancer elements.

W. Herr, U. Grossniklaus, N. Hernandez, 1988, Genes & development.

Elements required for transcription initiation of the human U2 snRNA gene coincide with elements required for snRNA 3′ end formation.

R. Lucito, N. Hernandez, 1988, The EMBO journal.

Genomic Study of RNA Polymerase II and III SNAPc-Bound Promoters Reveals a Gene Transcribed by Both Enzymes and a Broad Use of Common Activators

V. Praz, D. Romascano, N. Hernandez, 2012, PLoS genetics.

Differential regulation of RNA polymerase III genes during liver regeneration

N. Guex, M. Delorenzi, S. Raghav, 2018, Nucleic acids research.

RNA-targeted activators, but not DNA-targeted activators, repress the synthesis of short transcripts at the human immunodeficiency virus type 1 long terminal repeat

N. Hernandez, P. S. Pendergrast, P. Pendergrast, 1997, Journal of virology.

transcripts . immunodeficiency virus type 1 inducer of short cellular factor that binds to the human Purification and characterization of FBI-1 , a

N. Hernandez, F. Pessler, P. S. Pendergrast, 1997 .

Mutations in the carboxy-terminal domain of TBP affect the synthesis of human immunodeficiency virus type 1 full-length and short transcripts similarly

N. Hernandez, W. Tansey, P. S. Pendergrast, 1996, Journal of virology.

Characterization of the inducer of short transcripts, a human immunodeficiency virus type 1 transcriptional element that activates the synthesis of short RNAs

N. Hernandez, M. Sheldon, R. Ratnasabapathy, 1993, Molecular and cellular biology.

Redox Signaling by the RNA Polymerase III TFIIB-Related Factor Brf2

A. Thompson, A. Vannini, N. Hernandez, 2015, Cell.

Gene duplication and neofunctionalization: POLR3G and POLR3GL

Michael P Washburn, Viviane Praz, Nouria Hernandez, 2014, Genome research.

The HIV-1 long terminal repeat contains an unusual element that induces the synthesis of short RNAs from various mRNA and snRNA promoters.

N. Hernandez, M. Sheldon, R. Ratnasabapathy, 1990, Genes & development.

The Large Subunit of Basal Transcription Factor SNAPc Is a Myb Domain Protein That Interacts with Oct-1

R. Kobayashi, R. W. Henry, P. Matthias, 1998, Molecular and Cellular Biology.

SNAP(c): a core promoter factor with a built-in DNA-binding damper that is deactivated by the Oct-1 POU domain.

N. Hernandez, V. Mittal, B. Ma, 1999, Genes & development.

Transcriptional interference by RNA polymerase III affects expression of the Polr3e gene.

Viviane Praz, Nouria Hernandez, V. Praz, 2017, Genes & development.

On a roll for new TRF targets.

N. Hernandez, J. Reina, 2007, Genes & development.

Mitotic Functions for SNAP45, a Subunit of the Small Nuclear RNA-activating Protein Complex SNAPc

N. Hernandez, M. Shanmugam, 2008, Journal of Biological Chemistry.

The Oct-1 POU domain activates snRNA gene transcription by contacting a region in the SNAPc largest subunit that bears sequence similarities to the Oct-1 coactivator OBF-1.

N. Hernandez, M. Strubin, E. Ford, 1998, Genes & development.

N. Hernandez, M. Strubin, E. Ford, 1998 .

A transcribed enhancer dictates mesendoderm specification in pluripotency

Marco Mina, N. Hernandez, M. Ibberson, 2017, Nature Communications.

Monoclonal antibodies directed against the amino-terminal domain of human TBP cross-react with TBP from other species.

H. Stunnenberg, M. Falkowski, N. Hernandez, 1996, Hybridoma.

mTORC1 Directly Phosphorylates and Regulates Human MAF1

N. Hernandez, W. Hodroj, J. Reina, 2010, Molecular and Cellular Biology.

Structure-Function Analysis of the Human TFIIB-Related Factor II Protein Reveals an Essential Role for the C-Terminal Domain in RNA Polymerase III Transcription

N. Hernandez, L. Schramm, B. Ma, 2005, Molecular and Cellular Biology.

The Oct-1 POU-specific domain can stimulate small nuclear RNA gene transcription by stabilizing the basal transcription complex SNAPc

W. Herr, M. Cleary, N. Hernandez, 1996, Molecular and cellular biology.

Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding-fasting response and the circadian clock.

V. Praz, F. Schütz, N. Hernandez, 2017, Genome research.

Cycles of gene expression and genome response during mammalian tissue regeneration

N. Guex, W. Herr, V. Praz, 2018, Epigenetics & Chromatin.

FBI-1, a factor that binds to the HIV-1 inducer of short transcripts (IST), is a POZ domain protein.

R. Kobayashi, N. Hernandez, Debra J. Morrison, 1999, Nucleic acids research.

Role for the Amino-Terminal Region of Human TBP in U6 snRNA Transcription

N. Hernandez, V. Mittal, 1997, Science.

A Map of Protein-Protein Contacts within the Small Nuclear RNA-activating Protein Complex SNAPc *

N. Hernandez, B. Ma, 2001, The Journal of Biological Chemistry.

Characterization of a Trimeric Complex Containing Oct-1, SNAPc, and DNA*

N. Hernandez, E. Ford, 1997, The Journal of Biological Chemistry.

The HIV-1 Inducer of Short Transcripts Activates the Synthesis of 5,6-Dichloro-1-β-d-benzimidazole-resistant Short Transcripts in Vitro *

N. Hernandez, F. Pessler, 1998, The Journal of Biological Chemistry.

Artificial Zinc Finger Fusions Targeting Sp1-binding Sites and the trans-Activator-responsive Element Potently Repress Transcription and Replication of HIV-1*

C. Van Lint, M. Hur, W. Seol, 2005, Journal of Biological Chemistry.

Nanopore detection of single molecule RNAP-DNA transcription complex.

A. Radenović, N. Hernandez, F. Traversi, 2012, Nano letters.

Crossing the line between RNA polymerases

R. W. Henry, N. Hernandez, E. Ford, 1998 .

mTORC1 Directly Phosphorylates and Regulates Human MAF1

N. Hernandez, W. Hodroj, J. Reina, 2010, Molecular and Cellular Biology.