Jonathan A. Beagan

发表

YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment

Jennifer E. Phillips-Cremins, Jonathan A. Beagan, M. T. Duong, 2017, Genome research.

LADL: Light-activated dynamic looping for endogenous gene expression control

Jennifer E. Phillips-Cremins, A. Raj, Jonathan A. Beagan, 2018, bioRxiv.

LADL: Light-activated dynamic looping for endogenous gene expression control

Thomas G. Gilgenast, Jennifer E. Phillips-Cremins, Jacqueline A. Valeri, 2018, Nature Methods.

Widespread neuron-specific transgene expression in brain and spinal cord following synapsin promoter-driven AAV9 neonatal intracerebroventricular injection

O. Isacson, Jonathan A. Beagan, P. Hallett, 2014, Neuroscience Letters.

Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries

Thomas G. Gilgenast, Jennifer E. Phillips-Cremins, Flora Tassone, 2018, Cell.

CRISPR/Cas9 genome editing throws descriptive 3‐D genome folding studies for a loop

Jennifer E. Phillips-Cremins, Jonathan A. Beagan, 2016, Wiley interdisciplinary reviews. Systems biology and medicine.

Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression

Jennifer E. Phillips-Cremins, Lindsey R. Fernandez, Jonathan A. Beagan, 2020, Nature Neuroscience.

Cohesin-dependence of neuronal gene expression relates to chromatin loop length

Jennifer E. Phillips-Cremins, M. Ungless, A. Fisher, 2022, eLife.

Glucocerebrosidase gene therapy prevents α-synucleinopathy of midbrain dopamine neurons

Sarah C. Izen, O. Isacson, Jonathan A. Beagan, 2015, Neurobiology of Disease.

Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming.

Thomas G. Gilgenast, Jennifer E. Phillips-Cremins, Job Dekker, 2016, Cell stem cell.

Sustained Systemic Glucocerebrosidase Inhibition Induces Brain α-Synuclein Aggregation, Microglia and Complement C1q Activation in Mice

Sarah C. Izen, O. Isacson, Jonathan A. Beagan, 2015, Antioxidants & redox signaling.

On the existence and functionality of topologically associating domains

Jennifer E. Phillips-Cremins, Jonathan A. Beagan, 2020, Nature Genetics.

ALS-associated peripherin spliced transcripts form distinct protein inclusions that are neuroprotective against oxidative stress

O. Isacson, Jonathan A. Beagan, P. Hallett, 2014, Experimental Neurology.

Neuronal Yin Yang1 in the prefrontal cortex regulates transcriptional and behavioral responses to chronic stress in mice

Jennifer E. Phillips-Cremins, J. Blendy, Jonathan A. Beagan, 2022, Nature communications.

Stress-induced epigenetic regulation of transcription in neocortical excitatory neurons drives depression-like behavior

Jennifer E. Phillips-Cremins, J. Blendy, Jonathan A. Beagan, 2020, bioRxiv.

LADL: Light-activated dynamic looping for endogenous gene expression control

Jennifer E. Phillips-Cremins, Jacqueline A. Valeri, A. Raj, 2018, bioRxiv.

Genetic drivers of repeat expansion disorders localize to 3-D chromatin domain boundaries

Thomas G. Gilgenast, Jennifer E. Phillips-Cremins, Jonathan A. Beagan, 2017, bioRxiv.

Increased motor neuron resilience by small molecule compounds that regulate IGF-II expression

O. Isacson, Jonathan A. Beagan, Teresia M. Osborn, 2018, Neurobiology of Disease.

A Nurr1 Agonist Causes Neuroprotection in a Parkinson’s Disease Lesion Model Primed with the Toll-Like Receptor 3 dsRNA Inflammatory Stimulant Poly(I:C)

O. Isacson, Jonathan A. Beagan, P. Hallett, 2015, PloS one.

Reliance of neuronal gene expression on cohesin scales with chromatin loop length

Jennifer E. Phillips-Cremins, M. Ungless, A. Fisher, 2022, bioRxiv.

Activity-induced gene expression and long-range enhancer-promoter contacts in cohesin-deficient neurons

Jennifer E. Phillips-Cremins, M. Ungless, A. Fisher, 2021 .

5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design.

Jennifer E. Phillips-Cremins, Jonathan A. Beagan, Katelyn R. Titus, 2018, Methods.

Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression

Jennifer E. Phillips-Cremins, Lindsey R. Fernandez, Jonathan A. Beagan, 2020, Nature Neuroscience.

5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design

Jennifer E. Phillips-Cremins, Jonathan A. Beagan, Katelyn R. Titus, 2018, bioRxiv.

Neuronal Yin Yang1 in the prefrontal cortex regulates transcriptional and behavioral responses to chronic stress in mice

Jennifer E. Phillips-Cremins, J. Blendy, Jonathan A. Beagan, 2022, Nature Communications.

CRISPR/Cas9 genome editing throws descriptive 3‐D genome folding studies for a loop

Jennifer E. Phillips-Cremins, Jonathan A. Beagan, 2016, Wiley interdisciplinary reviews. Systems biology and medicine.