Shuai Jiang

发表

GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes

Zhiqiang Gao, Yan Fu, M. Long, 2019, Genome research.

New insights on human essential genes based on integrated analysis

Xin Huang, Xiaochen Bo, Hao Li, 2018 .

CMTCN: a web tool for investigating cancer-specific microRNA and transcription factor co-regulatory networks

Xin Huang, Xiaochen Bo, Yiming Lu, 2018, PeerJ.

A framework for predicting potential host ranges of pathogenic viruses based on receptor ortholog analysis

Xin Huang, Xiaochen Bo, Hao Li, 2020, bioRxiv.

An online coronavirus analysis platform from the National Genomics Data Center

Zhenglin Du, Shuhui Song, Yīmíng Bào, 2020, Zoological research.

Accurately annotate compound effects of genetic variants using a context-sensitive framework

Shuai Jiang, Huan Liu, Ge Gao, 2017, Nucleic acids research.

Multi-omics annotation of human long non-coding RNAs.

Zhang Zhang, Shuai Jiang, Z. Li, 2020, Biochemical Society transactions.

An expanded landscape of human long noncoding RNA

Yuan Lin, Shuai Jiang, Ge Gao, 2019, Nucleic acids research.

Linearization of Median Genomes Under the Double-Cut-and-Join-Indel Model

Shuai Jiang, M. Alekseyev, P. Avdeyev, 2019, Evolutionary bioinformatics online.

Implicit Transpositions in DCJ Scenarios

Shuai Jiang, M. Alekseyev, P. Avdeyev, 2017, Front. Genet..

Investigating Oscillation Loss in Computational Islets

A. Sherman, Shuai Jiang, J. Pan, 2013 .

Investigating Oscillation Loss in Computational Islets REU Site : Interdisciplinary Program in High Performance Computing

A. Sherman, Shuai Jiang, J. Pan, 2013 .

Dynamics of Computational Islet Simulations: Islets with majority mutated open KATP channels retain bursting

A. Sherman, Shuai Jiang, J. Pan, 2014 .

Exploration of prognosis-related microRNA and transcription factor co-regulatory networks across cancer types

Xin Huang, Ruijiang Li, Wanying Li, 2019, RNA biology.

A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data

Ruijiang Li, Zhuo Zhang, Wanying Li, 2018, Briefings Bioinform..

LncExpDB: an expression database of human long non-coding RNAs

Zhao Li, Dong Zou, Zhang Zhang, 2020, Nucleic Acids Res..

Stable H3K4me3 is associated with transcription initiation during early embryo development

Xin Huang, Ruijiang Li, Hao Li, 2019, Bioinform..

New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform

Hao Li, Ruijiang Li, Wanying Li, 2018, bioRxiv.

Exploring spatially adjacent TFBS-clustered regions with Hi-C data

Shuai Jiang, Hao Li, Zhuo Zhang, 2017, Bioinform..

ICM: a web server for integrated clustering of multi-dimensional biomedical data

Xin Huang, Shuai Jiang, Song He, 2016, Nucleic Acids Res..

The hierarchical folding dynamics of topologically associating domains are closely related to transcriptional abnormalities in cancers

Hao Li, Xin Huang, Xiaochen Bo, 2021, Computational and Structural Biotechnology Journal.

Reconstruction of ancestral genomes in presence of gene gain and loss

Shuai Jiang, Fei Hu, Max A. Alekseyev, 2016, bioRxiv.

Computational methods for the prediction of chromatin interaction and organization using sequence and epigenomic profiles

Xin Huang, Xiaochen Bo, Fei Li, 2021, Briefings in bioinformatics.

DeepHiC: A generative adversarial network for enhancing Hi-C data resolution

Hao Li, Ruijiang Li, Hao Hong, 2019, bioRxiv.

Time-resolved succession of epigenetic regulation during early mammalian development

Xin Huang, Xiaochen Bo, Hao Li, 2018 .

Spatial density of open chromatin: an effective metric for the functional characterization of topologically associated domains

Xin Huang, Hebing Chen, Xiaochen Bo, 2020, Briefings Bioinform..

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR

Yiming Bao, Dong Zou, Tong Jin, 2020, bioRxiv.

CompoDynamics: a comprehensive database for characterizing sequence composition dynamics

Zhang Zhang, Shuai Jiang, Lina Ma, 2021, Nucleic Acids Res..

Quantitative model suggests both intrinsic and contextual features contribute to the transcript coding ability determination in cells

Shuai Jiang, Dechang Yang, Ge Gao, 2021, bioRxiv.

Systematic identification and annotation of multiple-variant compound effects at transcription factor binding sites in human genome.

Shuai Jiang, Ge Gao, Yang Ding, 2018, Journal of genetics and genomics = Yi chuan xue bao.

Synergistic alterations in the multilevel chromatin structure anchor dysregulated genes in small cell lung cancer

Hao Li, Xin Huang, Xiaochen Bo, 2021, Computational and structural biotechnology journal.

Linearization of Median Genomes under DCJ

Shuai Jiang, Max A. Alekseyev, Shuai Jiang, 2014, WABI.

Assessment of tris (1, 3-dichloro-2-propyl) phosphate toxicology in PC12 cells by using digital gene expression profiling.

Shuai Jiang, Bencheng Lin, Kang Li, 2017, Chemosphere.

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021

Zhang Zhang, An-Yuan Guo, Xing Yan, 2020, Nucleic Acids Res..

LocExpress: a web server for efficiently estimating expression of novel transcripts

Shuai Jiang, Lei Kong, Feng Tian, 2016, BMC Genomics.

Implicit Transpositions in Shortest DCJ Scenarios

Shuai Jiang, Max A. Alekseyev, Shuai Jiang, 2015, AlCoB.

Weighted genomic distance can hardly impose a bound on the proportion of transpositions

Shuai Jiang, Max A. Alekseyev, Shuai Jiang, 2010, RECOMB.